SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    96401 2nwx:C (3.29) BS03 NA ? GO:0005283 ... O59010 17230192
    96402 2nwy:A (1.65) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 17330962
    96403 2nwz:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 17330962
    96404 2nx0:A (0.95) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68190 17488722
    96405 2nx0:A (0.95) BS02 NO 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68190 17488722
    96406 2nx1:A (1.8) BS01 RP5 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=0.02uM
    96407 2nx1:A (1.8) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96408 2nx1:B (1.8) BS01 RP5 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=0.02uM
    96409 2nx1:B (1.8) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96410 2nx3:A (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96411 2nx3:A (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96412 2nx3:B (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96413 2nx3:B (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96414 2nx3:C (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96415 2nx3:C (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96416 2nx3:D (2.1) BS01 1NT 2.5.1.55 GO:0005737 ... O66496 17381075
    96417 2nx3:E (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96418 2nx3:E (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96419 2nx3:F (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96420 2nx3:F (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96421 2nx3:G (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96422 2nx3:G (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96423 2nx3:H (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96424 2nx3:H (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96425 2nx3:I (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96426 2nx3:I (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96427 2nx3:J (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96428 2nx3:J (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96429 2nx3:K (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96430 2nx3:K (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96431 2nx3:L (2.1) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96432 2nx3:L (2.1) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96433 2nx5:A (2.7) BS01 peptide ? N/A P01889 17259989
    96434 2nx5:E (2.7) BS01 peptide ? N/A P01850 17259989
    96435 2nx5:F (2.7) BS01 peptide ? N/A P01889 17259989
    96436 2nx5:J (2.7) BS01 peptide ? N/A P01850 17259989
    96437 2nx5:K (2.7) BS01 peptide ? N/A P01889 17259989
    96438 2nx5:P (2.7) BS01 peptide ? N/A P01850 17259989
    96439 2nx5:Q (2.7) BS01 peptide ? N/A P01889 17259989
    96440 2nx5:U (2.7) BS01 peptide ? N/A P01850 17259989
    96441 2nx8:A (2.0) BS01 ZN 3.5.4.33 GO:0002100 ... Q5XE14 17554781
    96442 2nx9:A (1.7) BS01 ZN 2.1.3.1
    4.1.1.3
    GO:0003824 ... Q6A1F6 17270211
    96443 2nx9:B (1.7) BS01 ZN 2.1.3.1
    4.1.1.3
    GO:0003824 ... Q6A1F6 17270211
    96444 2nxa:A (2.29) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 17915249
    96445 2nxd:A (2.0) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 17729291
    96446 2nxd:B (2.0) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 17729291
    96447 2nxe:A (1.75) BS01 SAM 2.1.1.- GO:0005515 ... Q84BQ9 17215866 MOAD: Kd=5.5uM
    96448 2nxe:B (1.75) BS01 SAM 2.1.1.- GO:0005515 ... Q84BQ9 17215866 MOAD: Kd=5.5uM
    96449 2nxf:A (1.7) BS01 ZN 3.6.1.13
    3.6.1.16
    3.6.1.53
    GO:0008663 ... Q7T291 N/A
    96450 2nxf:A (1.7) BS02 ZN 3.6.1.13
    3.6.1.16
    3.6.1.53
    GO:0008663 ... Q7T291 N/A
    96451 2nxg:A (1.95) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96452 2nxg:A (1.95) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=17uM
    96453 2nxg:B (1.95) BS01 1NT 2.5.1.55 GO:0005737 ... O66496 17381075
    96454 2nxh:A (2.11) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96455 2nxh:A (2.11) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96456 2nxh:B (2.11) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96457 2nxh:B (2.11) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96458 2nxh:C (2.11) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96459 2nxh:C (2.11) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96460 2nxh:D (2.11) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96461 2nxh:D (2.11) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96462 2nxh:E (2.11) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96463 2nxh:E (2.11) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96464 2nxh:F (2.11) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96465 2nxh:F (2.11) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96466 2nxh:G (2.11) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96467 2nxh:G (2.11) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96468 2nxh:H (2.11) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96469 2nxh:I (2.11) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96470 2nxh:I (2.11) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96471 2nxh:J (2.11) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96472 2nxh:K (2.11) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96473 2nxh:K (2.11) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96474 2nxh:L (2.11) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96475 2nxh:L (2.11) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96476 2nxi:A (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96477 2nxi:B (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96478 2nxi:B (2.3) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96479 2nxi:C (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96480 2nxi:C (2.3) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96481 2nxi:D (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96482 2nxi:E (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96483 2nxi:F (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96484 2nxi:G (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96485 2nxi:G (2.3) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96486 2nxi:H (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96487 2nxi:H (2.3) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96488 2nxi:I (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96489 2nxi:I (2.3) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96490 2nxi:J (2.3) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 17381075
    96491 2nxi:J (2.3) BS02 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96492 2nxi:K (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96493 2nxi:L (2.3) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 17381075
    96494 2nxl:A (2.0) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 17729291
    96495 2nxl:B (2.0) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 17729291
    96496 2nxm:A (2.25) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 17729291
    96497 2nxm:B (2.25) BS01 peptide 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03369 17729291
    96498 2nxp:A (2.17) BS01 CA ? N/A Q15542 17227857
    96499 2nxp:B (2.17) BS01 CA ? N/A Q15542 17227857
    96500 2nxp:C (2.17) BS01 CA ? N/A Q15542 17227857
    96501 2nxp:D (2.17) BS01 CA ? N/A Q15542 17227857
    96502 2nxp:E (2.17) BS01 CA ? N/A Q15542 17227857
    96503 2nxp:F (2.17) BS01 CA ? N/A Q15542 17227857
    96504 2nxp:G (2.17) BS01 CA ? N/A Q15542 17227857
    96505 2nxp:H (2.17) BS01 CA ? N/A Q15542 17227857
    96506 2nxq:A (2.4) BS01 CA ? GO:0001891 ... P38505 17554780
    96507 2nxq:A (2.4) BS02 CA ? GO:0001891 ... P38505 17554780
    96508 2nxq:B (2.4) BS01 CA ? GO:0001891 ... P38505 17554780
    96509 2nxq:B (2.4) BS02 CA ? GO:0001891 ... P38505 17554780
    96510 2nxr:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 17330962
    96511 2nxs:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 17330962
    96512 2nxt:A (1.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 17330962
    96513 2nxw:A (1.5) BS01 MG 4.1.1.74 GO:0000287 ... P51852 17403037
    96514 2nxw:A (1.5) BS02 TPP 4.1.1.74 GO:0000287 ... P51852 17403037
    96515 2nxw:A (1.5) BS03 TPP 4.1.1.74 GO:0000287 ... P51852 17403037
    96516 2nxw:B (1.5) BS01 TPP 4.1.1.74 GO:0000287 ... P51852 17403037
    96517 2nxw:B (1.5) BS02 MG 4.1.1.74 GO:0000287 ... P51852 17403037
    96518 2nxw:B (1.5) BS03 TPP 4.1.1.74 GO:0000287 ... P51852 17403037
    96519 2nxx:E (2.75) BS01 P1A ? GO:0003677 ... A1JUG3 17673910
    96520 2nxx:F (2.75) BS01 P1A ? GO:0003677 ... A1JUG3 17673910
    96521 2nxx:G (2.75) BS01 P1A ? GO:0003677 ... A1JUG3 17673910
    96522 2nxx:H (2.75) BS01 P1A ? GO:0003677 ... A1JUG3 17673910
    96523 2nxz:D (2.04) BS01 GLC N/A N/A N/A 17301785
    96524 2ny1:C (1.99) BS01 FRU ? N/A Q6P5S8 17301785
    96525 2ny1:D (1.99) BS01 GLC ? N/A Q6N030 17301785
    96526 2ny1:D (1.99) BS02 FRU ? N/A Q6N030 17301785
    96527 2ny2:C (2.0) BS01 FRU ? N/A Q6P5S8 17301785
    96528 2ny2:D (2.0) BS01 GLC N/A N/A N/A 17301785
    96529 2ny3:C (2.0) BS01 FRU ? N/A Q6P5S8 17301785
    96530 2ny3:D (2.0) BS01 GLC ? N/A Q6N030 17301785
    96531 2ny3:D (2.0) BS02 FRU ? N/A Q6N030 17301785
    96532 2ny4:C (2.0) BS01 FRU ? N/A Q6P5S8 17301785
    96533 2ny4:D (2.0) BS01 GLC N/A N/A N/A 17301785
    96534 2ny4:D (2.0) BS02 FRU N/A N/A N/A 17301785
    96535 2ny5:H (2.5) BS01 GLC N/A N/A N/A 17301785
    96536 2ny6:D (2.8) BS01 GLC ? N/A Q6N030 17301785
    96537 2ny6:D (2.8) BS02 FRU ? N/A Q6N030 17301785
    96538 2nya:A (2.5) BS01 SF4 1.9.6.1 GO:0005506 ... P33937 17130127
    96539 2nya:A (2.5) BS02 MGD 1.9.6.1 GO:0005506 ... P33937 17130127
    96540 2nya:A (2.5) BS03 MGD 1.9.6.1 GO:0005506 ... P33937 17130127
    96541 2nya:F (2.5) BS01 SF4 1.9.6.1 GO:0005506 ... P33937 17130127
    96542 2nya:F (2.5) BS02 MGD 1.9.6.1 GO:0005506 ... P33937 17130127
    96543 2nya:F (2.5) BS03 MGD 1.9.6.1 GO:0005506 ... P33937 17130127
    96544 2nyb:A (1.1) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    96545 2nyb:A (1.1) BS02 O 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    96546 2nyb:B (1.1) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    96547 2nyb:B (1.1) BS02 O 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    96548 2nyb:C (1.1) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    96549 2nyb:C (1.1) BS02 O 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    96550 2nyb:D (1.1) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    96551 2nyb:D (1.1) BS02 O 1.15.1.1 GO:0000303 ... P0AGD3 17628062
    96552 2nyd:A (2.0) BS01 ZN ? GO:0005737 ... P67273 17187687
    96553 2nyd:A (2.0) BS02 ZN ? GO:0005737 ... P67273 17187687
    96554 2nyd:B (2.0) BS01 ZN ? GO:0005737 ... P67273 17187687
    96555 2nyd:B (2.0) BS02 ZN ? GO:0005737 ... P67273 17187687
    96556 2nyg:A (2.6) BS01 COA 2.3.1.- GO:0008080 ... O32003 N/A
    96557 2nyg:B (2.6) BS01 COA 2.3.1.- GO:0008080 ... O32003 N/A
    96558 2nyg:C (2.6) BS01 COA 2.3.1.- GO:0008080 ... O32003 N/A
    96559 2nyg:D (2.6) BS01 COA 2.3.1.- GO:0008080 ... O32003 N/A
    96560 2nyg:E (2.6) BS01 COA 2.3.1.- GO:0008080 ... O32003 N/A
    96561 2nyj:A (3.2) BS01 ATP ? GO:0005216 ... O35433 17582331
    96562 2nyk:A (2.1) BS01 FUC ? N/A Q6XK79 17537914
    96563 2nyl:C (3.8) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 17174897
    96564 2nyl:C (3.8) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    96565 2nyl:C (3.8) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    96566 2nyl:F (3.8) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 17174897
    96567 2nyl:F (3.8) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    96568 2nyl:F (3.8) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    96569 2nym:C (3.6) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 17174897
    96570 2nym:C (3.6) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    96571 2nym:C (3.6) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    96572 2nym:F (3.6) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 17174897
    96573 2nym:F (3.6) BS02 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    96574 2nym:F (3.6) BS03 MN 3.1.3.16 GO:0000159 ... P67775 17174897
    96575 2nyp:A (1.84) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 17915249
    96576 2nyp:A (1.84) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 17915249
    96577 2nyq:A (2.5) BS01 peptide 3.4.11.10 GO:0006508 ... Q01693 N/A
    96578 2nyq:A (2.5) BS02 ZN 3.4.11.10 GO:0006508 ... Q01693 N/A
    96579 2nyq:A (2.5) BS03 ZN 3.4.11.10 GO:0006508 ... Q01693 N/A
    96580 2nyr:A (2.06) BS01 ZN 2.3.1.- GO:0036054 ... Q9NXA8 17355872
    96581 2nyr:A (2.06) BS02 SVR 2.3.1.- GO:0036054 ... Q9NXA8 17355872 BindingDB: IC50=25000nM
    96582 2nyr:B (2.06) BS01 SVR 2.3.1.- GO:0036054 ... Q9NXA8 17355872 BindingDB: IC50=25000nM
    96583 2nyr:B (2.06) BS02 ZN 2.3.1.- GO:0036054 ... Q9NXA8 17355872
    96584 2nyt:A (2.5) BS01 ZN 3.5.4.36 N/A Q9Y235 17187054
    96585 2nyt:B (2.5) BS01 ZN 3.5.4.36 N/A Q9Y235 17187054
    96586 2nyt:C (2.5) BS01 ZN 3.5.4.36 N/A Q9Y235 17187054
    96587 2nyt:D (2.5) BS01 ZN 3.5.4.36 N/A Q9Y235 17187054
    96588 2nyu:A (1.76) BS01 SAM 2.1.1.- GO:0001510 ... Q9UI43 N/A
    96589 2nyu:B (1.76) BS01 SAM 2.1.1.- GO:0001510 ... Q9UI43 N/A
    96590 2nyy:A (2.61) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 17173035
    96591 2nz0:A (3.2) BS01 CA ? GO:0005509 ... Q9NZI2 17187064
    96592 2nz0:A (3.2) BS02 CA ? GO:0005509 ... Q9NZI2 17187064
    96593 2nz0:B (3.2) BS01 ZN ? GO:0005249 ... Q9UK17 17187064
    96594 2nz0:C (3.2) BS01 CA ? GO:0005509 ... Q9NZI2 17187064
    96595 2nz0:C (3.2) BS02 CA ? GO:0005509 ... Q9NZI2 17187064
    96596 2nz0:D (3.2) BS01 ZN ? GO:0005249 ... Q9UK17 17187064
    96597 2nz2:A (2.4) BS01 ASP 6.3.4.5 GO:0000050 ... P00966 18323623
    96598 2nz2:A (2.4) BS02 CIR 6.3.4.5 GO:0000050 ... P00966 18323623
    96599 2nz4:A (2.498) BS01 rna ? GO:0003676 ... P09012 17196404
    96600 2nz4:B (2.498) BS01 rna ? GO:0003676 ... P09012 17196404

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).