SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    968201 9eys:b (2.01) BS43 CLA N/A GO:0000287 ... K9TVF3 41066538
    968202 9eys:b (2.01) BS44 CLA N/A GO:0000287 ... K9TVF3 41066538
    968203 9eys:b (2.01) BS45 CLA N/A GO:0000287 ... K9TVF3 41066538
    968204 9eys:b (2.01) BS46 CLA N/A GO:0000287 ... K9TVF3 41066538
    968205 9eys:b (2.01) BS47 CLA N/A GO:0000287 ... K9TVF3 41066538
    968206 9eys:b (2.01) BS48 CLA N/A GO:0000287 ... K9TVF3 41066538
    968207 9eys:b (2.01) BS49 F6C N/A GO:0000287 ... K9TVF3 41066538
    968208 9eys:b (2.01) BS50 CLA N/A GO:0000287 ... K9TVF3 41066538
    968209 9eys:b (2.01) BS51 PQN N/A GO:0000287 ... K9TVF3 41066538
    968210 9eys:c (2.01) BS01 SF4 N/A GO:0009055 ... K9TVB5 41066538
    968211 9eys:c (2.01) BS02 SF4 N/A GO:0009055 ... K9TVB5 41066538
    968212 9eys:f (2.01) BS01 peptide N/A GO:0009522 ... K9TZX8 41066538
    968213 9eys:f (2.01) BS02 CLA N/A GO:0009522 ... K9TZX8 41066538
    968214 9eys:f (2.01) BS03 CLA N/A GO:0009522 ... K9TZX8 41066538
    968215 9eys:f (2.01) BS04 CLA N/A GO:0009522 ... K9TZX8 41066538
    968216 9eys:f (2.01) BS05 CLA N/A GO:0009522 ... K9TZX8 41066538
    968217 9eys:g (2.01) BS01 CLA N/A GO:0009522 ... K9TVX2 41066538
    968218 9eys:g (2.01) BS02 F6C N/A GO:0009522 ... K9TVX2 41066538
    968219 9eys:h (2.01) BS01 CLA N/A GO:0009522 ... K9TYS7 41066538
    968220 9eys:h (2.01) BS02 F6C N/A GO:0009522 ... K9TYS7 41066538
    968221 9eys:h (2.01) BS03 CLA N/A GO:0009522 ... K9TYS7 41066538
    968222 9eys:i (2.01) BS01 CLA N/A GO:0009522 ... K9TX25 41066538
    968223 9eys:i (2.01) BS02 CLA N/A GO:0009522 ... K9TX25 41066538
    968224 9eys:i (2.01) BS03 CLA N/A GO:0009522 ... K9TX25 41066538
    968225 9eys:j (2.01) BS01 CA N/A GO:0009522 ... K9TX29 41066538
    968226 9eys:j (2.01) BS02 CLA N/A GO:0009522 ... K9TX29 41066538
    968227 9eys:j (2.01) BS03 CLA N/A GO:0009522 ... K9TX29 41066538
    968228 9eys:j (2.01) BS04 CLA N/A GO:0009522 ... K9TX29 41066538
    968229 9eys:j (2.01) BS05 CLA N/A GO:0009522 ... K9TX29 41066538
    968230 9eys:j (2.01) BS06 F6C N/A GO:0009522 ... K9TX29 41066538
    968231 9eys:j (2.01) BS07 F6C N/A GO:0009522 ... K9TX29 41066538
    968232 9eys:j (2.01) BS08 CLA N/A GO:0009522 ... K9TX29 41066538
    968233 9eys:j (2.01) BS09 CLA N/A GO:0009522 ... K9TX29 41066538
    968234 9eys:j (2.01) BS10 F6C N/A GO:0009522 ... K9TX29 41066538
    968235 9eys:j (2.01) BS11 CA N/A GO:0009522 ... K9TX29 41066538
    968236 9eys:k (2.01) BS01 CLA N/A GO:0015979 ... K9TSY6 41066538
    968237 9eys:k (2.01) BS02 CLA N/A GO:0015979 ... K9TSY6 41066538
    968238 9eyt:A (1.74) BS01 peptide N/A GO:0005198 ... P22137 39511183
    968239 9eyt:A (1.74) BS02 peptide N/A GO:0005198 ... P22137 39511183
    968240 9eyt:A (1.74) BS03 peptide N/A GO:0005198 ... P22137 39511183
    968241 9eyu:A (2.35) BS01 A1H8A N/A GO:0000387 ... O14744 39080842
    968242 9eyu:A (2.35) BS02 MTA N/A GO:0000387 ... O14744 39080842
    968243 9eyv:A (2.15) BS01 A1H76 N/A GO:0000387 ... O14744 39080842
    968244 9eyv:A (2.15) BS02 MTA N/A GO:0000387 ... O14744 39080842
    968245 9eyw:A (2.3) BS01 A1H8B N/A GO:0000387 ... O14744 39080842
    968246 9eyw:A (2.3) BS02 MTA N/A GO:0000387 ... O14744 39080842
    968247 9eyx:A (2.2) BS01 A1H73 N/A GO:0000387 ... O14744 39080842
    968248 9eyx:A (2.2) BS02 MTA N/A GO:0000387 ... O14744 39080842
    968249 9ez1:A (1.95) BS01 peptide N/A GO:0003677 ... Q9PTN2 38785958
    968250 9ez1:A (1.95) BS02 A1H9P N/A GO:0003677 ... Q9PTN2 38785958
    968251 9ez2:A (1.8) BS01 peptide N/A GO:0003677 ... Q9PTN2 38785958
    968252 9ez2:A (1.8) BS02 A1H72 N/A GO:0003677 ... Q9PTN2 38785958
    968253 9ez3:A (2.7) BS01 A1H74 N/A GO:0004672 ... P49761 40465731
    968254 9ez4:A (1.8) BS01 peptide N/A GO:0008233 ... A0A6C1F1G5 39496839
    968255 9ez4:B (1.8) BS01 GLN N/A GO:0008233 ... P0DTD1 39496839
    968256 9ez5:A (1.846) BS01 dna N/A N/A Q8RLN4 40055548
    968257 9ez5:A (1.846) BS02 dna N/A N/A Q8RLN4 40055548
    968258 9ez6:A (1.87) BS01 peptide N/A GO:0008233 ... A0A6C1F1G5 39496839
    968259 9ez6:B (1.87) BS01 GLN N/A GO:0008233 ... A0A6C1F1G5 39496839
    968260 9ez7:A (2.031) BS01 dna N/A N/A Q8RLN4 40055548
    968261 9ez7:A (2.031) BS02 dna N/A N/A Q8RLN4 40055548
    968262 9ez7:A (2.031) BS03 CA N/A N/A Q8RLN4 40055548
    968263 9ez9:A (2.6) BS01 FMN N/A GO:0004152 ... Q02127 N/A
    968264 9ez9:A (2.6) BS02 A1H8I N/A GO:0004152 ... Q02127 N/A
    968265 9eza:D (2.147) BS01 A1H79 N/A N/A Q8NI17 N/A
    968266 9ezd:A (2.635) BS01 dna N/A N/A Q8RLN4 40055548
    968267 9ezd:A (2.635) BS02 dna N/A N/A Q8RLN4 40055548
    968268 9ezd:A (2.635) BS03 dna N/A N/A Q8RLN4 40055548
    968269 9ezd:A (2.635) BS04 MG N/A N/A Q8RLN4 40055548
    968270 9ezg:A (2.18) BS01 A1H8C N/A GO:0004672 ... P68400 38959455
    968271 9ezg:B (2.18) BS01 A1H8C N/A GO:0004672 ... P68400 38959455
    968272 9ezj:A (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 39537789
    968273 9ezj:A (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 39537789
    968274 9ezj:B (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 39537789
    968275 9ezj:B (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 39537789
    968276 9ezj:C (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 39537789
    968277 9ezj:C (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 39537789
    968278 9ezj:D (2.612) BS01 ZIQ 1.13.11.11 GO:0004833 ... P48775 39537789
    968279 9ezj:D (2.612) BS02 A1H8G 1.13.11.11 GO:0004833 ... P48775 39537789
    968280 9ezl:A (2.97) BS01 CA N/A GO:0003824 ... I3NX86 39109746
    968281 9ezl:A (2.97) BS02 MG N/A GO:0003824 ... I3NX86 39109746
    968282 9ezl:B (2.97) BS01 CA N/A GO:0003824 ... I3NX86 39109746
    968283 9ezl:B (2.97) BS02 MG N/A GO:0003824 ... I3NX86 39109746
    968284 9ezl:C (2.97) BS01 CA N/A GO:0003824 ... I3NX86 39109746
    968285 9ezl:C (2.97) BS02 MG N/A GO:0003824 ... I3NX86 39109746
    968286 9ezl:D (2.97) BS01 CA N/A GO:0003824 ... I3NX86 39109746
    968287 9ezl:D (2.97) BS02 MG N/A GO:0003824 ... I3NX86 39109746
    968288 9ezl:E (2.97) BS01 CA N/A GO:0003824 ... I3NX86 39109746
    968289 9ezl:E (2.97) BS02 MG N/A GO:0003824 ... I3NX86 39109746
    968290 9ezl:F (2.97) BS01 CA N/A GO:0003824 ... I3NX86 39109746
    968291 9ezl:F (2.97) BS02 MG N/A GO:0003824 ... I3NX86 39109746
    968292 9ezl:G (2.97) BS01 CA N/A GO:0003824 ... I3NX86 39109746
    968293 9ezl:G (2.97) BS02 MG N/A GO:0003824 ... I3NX86 39109746
    968294 9ezl:H (2.97) BS01 CA N/A GO:0003824 ... I3NX86 39109746
    968295 9ezl:H (2.97) BS02 MG N/A GO:0003824 ... I3NX86 39109746
    968296 9ezn:A (-1.00) BS01 peptide N/A N/A Q14247 39914658
    968297 9ezo:A (-1.00) BS01 peptide N/A N/A Q14247 39914658
    968298 9ezp:A (-1.00) BS01 peptide N/A N/A Q14247 39914658
    968299 9ezq:A (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968300 9ezq:B (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968301 9ezq:C (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968302 9ezq:D (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968303 9ezr:A (2.51) BS01 NAD N/A GO:0000209 ... P15559 41611948
    968304 9ezr:A (2.51) BS02 FAD N/A GO:0000209 ... P15559 41611948
    968305 9ezr:A (2.51) BS03 NAD N/A GO:0000209 ... P15559 41611948
    968306 9ezr:B (2.51) BS01 NAD N/A GO:0000209 ... P15559 41611948
    968307 9ezr:B (2.51) BS02 NAD N/A GO:0000209 ... P15559 41611948
    968308 9ezr:B (2.51) BS03 FAD N/A GO:0000209 ... P15559 41611948
    968309 9ezr:C (2.51) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968310 9ezr:C (2.51) BS02 NAD N/A GO:0000209 ... P15559 41611948
    968311 9ezr:D (2.51) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968312 9ezr:D (2.51) BS02 NAD N/A GO:0000209 ... P15559 41611948
    968313 9ezs:A (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968314 9ezs:B (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968315 9ezs:C (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968316 9ezs:D (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968317 9ezt:A (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968318 9ezt:A (2.5) BS02 NAD N/A GO:0000209 ... P15559 41611948
    968319 9ezt:B (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968320 9ezt:B (2.5) BS02 NAD N/A GO:0000209 ... P15559 41611948
    968321 9ezt:C (2.5) BS01 FAD N/A GO:0000209 ... P15559 41611948
    968322 9ezt:C (2.5) BS02 NAD N/A GO:0000209 ... P15559 41611948
    968323 9ezt:C (2.5) BS03 FAD N/A GO:0000209 ... P15559 41611948
    968324 9ezt:D (2.5) BS01 NAD N/A GO:0000209 ... P15559 41611948
    968325 9ezt:D (2.5) BS02 FAD N/A GO:0000209 ... P15559 41611948
    968326 9ezy:A (2.56) BS01 dna N/A N/A Q9KR72 38870273
    968327 9ezy:B (2.56) BS01 dna N/A N/A Q9KR73 38870273
    968328 9ezy:B (2.56) BS02 dna N/A N/A Q9KR73 38870273
    968329 9ezy:B (2.56) BS03 dna N/A N/A Q9KR73 38870273
    968330 9ezz:A (1.95) BS01 dna N/A GO:0046982 ... Q6MRM1 38864377
    968331 9f03:A (3.3) BS01 LBV N/A GO:0006355 ... G1FNL7 N/A
    968332 9f07:A (2.211) BS01 GTP N/A GO:0000226 ... D0VWZ0 39534653
    968333 9f07:B (2.211) BS01 GDP N/A GO:0003924 ... D0VWY9 39534653
    968334 9f07:E (2.211) BS01 GTP N/A GO:0000226 ... D0VWZ0 39534653
    968335 9f07:F (2.211) BS01 GDP N/A GO:0003924 ... D0VWY9 39534653
    968336 9f08:A (2.371) BS01 2DR N/A GO:0043173 ... Q9R5V5 39234214
    968337 9f08:B (2.371) BS01 2DR N/A GO:0043173 ... Q9R5V5 39234214
    968338 9f09:A (2.37) BS01 DCZ N/A GO:0043173 ... Q9R5V5 39234214
    968339 9f09:A (2.37) BS02 A1H8P N/A GO:0043173 ... Q9R5V5 39234214
    968340 9f09:B (2.37) BS01 DCZ N/A GO:0043173 ... Q9R5V5 39234214
    968341 9f09:B (2.37) BS02 A1H8P N/A GO:0043173 ... Q9R5V5 39234214
    968342 9f09:B (2.37) BS03 2DR N/A GO:0043173 ... Q9R5V5 39234214
    968343 9f09:B (2.37) BS04 A1H8P N/A GO:0043173 ... Q9R5V5 39234214
    968344 9f0a:A (3.36) BS01 A1H8N N/A GO:0005634 ... O60341 N/A
    968345 9f0e:A (1.85) BS01 dna N/A GO:0046982 ... Q6MRM1 38864377
    968346 9f0f:A (2.1) BS01 HT9 4.99.1.9 GO:0004325 ... Q8Y565 39146673
    968347 9f0f:A (2.1) BS02 FE 4.99.1.9 GO:0004325 ... Q8Y565 39146673
    968348 9f0g:A (1.85) BS01 FEC 4.99.1.9 GO:0004325 ... Q8Y565 39146673
    968349 9f0h:A (1.8) BS01 peptide N/A GO:0031469 ... P45688 39612341
    968350 9f0i:A (1.4) BS01 A1H8Q N/A GO:0000413 ... P30405 N/A
    968351 9f0j:A (3.35) BS01 rna N/A GO:0003677 ... Q8R5F7 40450684
    968352 9f0j:A (3.35) BS02 rna N/A GO:0003677 ... Q8R5F7 40450684
    968353 9f0j:A (3.35) BS03 ZN N/A GO:0003677 ... Q8R5F7 40450684
    968354 9f0m:A (1.63) BS01 BGC N/A GO:0000272 ... Q8TG26 N/A
    968355 9f0m:A (1.63) BS02 BGC N/A GO:0000272 ... Q8TG26 N/A
    968356 9f0m:A (1.63) BS03 BGC N/A GO:0000272 ... Q8TG26 N/A
    968357 9f0m:B (1.63) BS01 BGC N/A GO:0000272 ... Q8TG26 N/A
    968358 9f0m:B (1.63) BS02 BGC N/A GO:0000272 ... Q8TG26 N/A
    968359 9f0o:A (2.3) BS01 dna N/A GO:0000786 ... P84233 40750945
    968360 9f0o:A (2.3) BS02 dna N/A GO:0000786 ... P84233 40750945
    968361 9f0o:B (2.3) BS01 dna N/A GO:0003677 ... P62799 40750945
    968362 9f0o:B (2.3) BS02 dna N/A GO:0003677 ... P62799 40750945
    968363 9f0o:C (2.3) BS01 dna N/A GO:0000786 ... P06897 40750945
    968364 9f0o:C (2.3) BS02 dna N/A GO:0000786 ... P06897 40750945
    968365 9f0o:C (2.3) BS03 peptide N/A GO:0000786 ... P06897 40750945
    968366 9f0o:D (2.3) BS01 dna N/A GO:0000786 ... P02281 40750945
    968367 9f0o:D (2.3) BS02 dna N/A GO:0000786 ... P02281 40750945
    968368 9f0o:D (2.3) BS03 peptide N/A GO:0000786 ... P02281 40750945
    968369 9f0o:E (2.3) BS01 dna N/A GO:0000786 ... P84233 40750945
    968370 9f0o:E (2.3) BS02 dna N/A GO:0000786 ... P84233 40750945
    968371 9f0o:F (2.3) BS01 dna N/A GO:0003677 ... P62799 40750945
    968372 9f0o:F (2.3) BS02 dna N/A GO:0003677 ... P62799 40750945
    968373 9f0o:G (2.3) BS01 dna N/A GO:0000786 ... P06897 40750945
    968374 9f0o:G (2.3) BS02 dna N/A GO:0000786 ... P06897 40750945
    968375 9f0o:G (2.3) BS03 peptide N/A GO:0000786 ... P06897 40750945
    968376 9f0o:H (2.3) BS01 dna N/A GO:0000786 ... P02281 40750945
    968377 9f0o:H (2.3) BS02 dna N/A GO:0000786 ... P02281 40750945
    968378 9f0o:H (2.3) BS03 peptide N/A GO:0000786 ... P02281 40750945
    968379 9f0p:A (1.34) BS01 A1IKA N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968380 9f0p:A (1.34) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968381 9f0p:A (1.34) BS03 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968382 9f0p:B (1.34) BS01 A1IKA N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968383 9f0p:B (1.34) BS02 A1H8T N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968384 9f0p:B (1.34) BS03 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968385 9f0p:B (1.34) BS04 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968386 9f0q:A (1.92) BS01 A1IJ9 N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968387 9f0q:A (1.92) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968388 9f0q:A (1.92) BS03 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968389 9f0q:B (1.92) BS01 A1H8W N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968390 9f0q:B (1.92) BS02 A1IJ9 N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968391 9f0q:B (1.92) BS03 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968392 9f0q:B (1.92) BS04 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968393 9f0r:A (1.3) BS01 A1H8V N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968394 9f0r:A (1.3) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968395 9f0r:A (1.3) BS03 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968396 9f0r:A (1.3) BS04 MG N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968397 9f0r:B (1.3) BS01 A1H8V N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968398 9f0r:B (1.3) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968399 9f0r:B (1.3) BS03 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968400 9f0s:A (1.4) BS01 A1H8U N/A GO:0008800 ... A0A0F7KYQ8 40253435

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).