SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    968401 9f0s:A (1.4) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968402 9f0s:A (1.4) BS03 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968403 9f0s:B (1.4) BS01 A1H8U N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968404 9f0s:B (1.4) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968405 9f0s:B (1.4) BS03 ZN N/A GO:0008800 ... A0A0F7KYQ8 40253435
    968406 9f0t:A (0.98) BS01 A1H8S N/A GO:0005829 ... Q9F663 N/A
    968407 9f0u:A (1.11) BS01 XR9 N/A GO:0005829 ... Q9F663 N/A
    968408 9f0v:A (1.1) BS01 A1H8R N/A GO:0005829 ... Q9F663 N/A
    968409 9f0x:C (3.78) BS01 dna N/A GO:0000976 ... P0A6X7 40425557
    968410 9f0x:C (3.78) BS02 dna N/A GO:0000976 ... P0A6X7 40425557
    968411 9f0x:D (3.78) BS01 dna N/A GO:0003677 ... P0A6Y1 40425557
    968412 9f0x:D (3.78) BS02 dna N/A GO:0003677 ... P0A6Y1 40425557
    968413 9f0x:E (3.78) BS01 dna N/A GO:0003677 ... P06627 40425557
    968414 9f0x:E (3.78) BS02 dna N/A GO:0003677 ... P06627 40425557
    968415 9f0x:F (3.78) BS01 dna N/A GO:0003677 ... P06627 40425557
    968416 9f0x:F (3.78) BS02 dna N/A GO:0003677 ... P06627 40425557
    968417 9f0x:G (3.78) BS01 dna N/A GO:0003677 ... P06627 40425557
    968418 9f0x:G (3.78) BS02 dna N/A GO:0003677 ... P06627 40425557
    968419 9f0x:H (3.78) BS01 dna N/A GO:0003677 ... P14565 40425557
    968420 9f0x:H (3.78) BS02 dna N/A GO:0003677 ... P14565 40425557
    968421 9f0y:C (3.45) BS01 dna N/A GO:0000976 ... P0A6X7 40425557
    968422 9f0y:C (3.45) BS02 dna N/A GO:0000976 ... P0A6X7 40425557
    968423 9f0y:D (3.45) BS01 dna N/A GO:0003677 ... P0A6Y1 40425557
    968424 9f0y:D (3.45) BS02 dna N/A GO:0003677 ... P0A6Y1 40425557
    968425 9f0y:E (3.45) BS01 dna N/A GO:0003677 ... P06627 40425557
    968426 9f0y:E (3.45) BS02 dna N/A GO:0003677 ... P06627 40425557
    968427 9f0y:F (3.45) BS01 dna N/A GO:0003677 ... P06627 40425557
    968428 9f0y:F (3.45) BS02 dna N/A GO:0003677 ... P06627 40425557
    968429 9f0y:G (3.45) BS01 dna N/A GO:0003677 ... P06627 40425557
    968430 9f0y:G (3.45) BS02 dna N/A GO:0003677 ... P06627 40425557
    968431 9f0y:H (3.45) BS01 dna N/A GO:0003677 ... P14565 40425557
    968432 9f0y:H (3.45) BS02 dna N/A GO:0003677 ... P14565 40425557
    968433 9f0y:H (3.45) BS03 MG N/A GO:0003677 ... P14565 40425557
    968434 9f0z:C (3.42) BS01 dna N/A GO:0000976 ... P0A6X7 40425557
    968435 9f0z:C (3.42) BS02 dna N/A GO:0000976 ... P0A6X7 40425557
    968436 9f0z:D (3.42) BS01 dna N/A GO:0003677 ... P0A6Y1 40425557
    968437 9f0z:D (3.42) BS02 dna N/A GO:0003677 ... P0A6Y1 40425557
    968438 9f0z:E (3.42) BS01 dna N/A GO:0003677 ... P06627 40425557
    968439 9f0z:E (3.42) BS02 dna N/A GO:0003677 ... P06627 40425557
    968440 9f0z:F (3.42) BS01 dna N/A GO:0003677 ... P06627 40425557
    968441 9f0z:F (3.42) BS02 dna N/A GO:0003677 ... P06627 40425557
    968442 9f0z:G (3.42) BS01 dna N/A GO:0003677 ... P06627 40425557
    968443 9f0z:G (3.42) BS02 dna N/A GO:0003677 ... P06627 40425557
    968444 9f0z:H (3.42) BS01 dna N/A N/A P14565 40425557
    968445 9f0z:H (3.42) BS02 dna N/A N/A P14565 40425557
    968446 9f0z:H (3.42) BS03 MG N/A N/A P14565 40425557
    968447 9f10:C (2.94) BS01 dna N/A GO:0000976 ... P0A6X7 40425557
    968448 9f10:C (2.94) BS02 dna N/A GO:0000976 ... P0A6X7 40425557
    968449 9f10:D (2.94) BS01 dna N/A GO:0003677 ... P0A6Y1 40425557
    968450 9f10:D (2.94) BS02 dna N/A GO:0003677 ... P0A6Y1 40425557
    968451 9f10:E (2.94) BS01 dna N/A GO:0003677 ... P06627 40425557
    968452 9f10:E (2.94) BS02 dna N/A GO:0003677 ... P06627 40425557
    968453 9f10:F (2.94) BS01 dna N/A GO:0003677 ... P06627 40425557
    968454 9f10:F (2.94) BS02 dna N/A GO:0003677 ... P06627 40425557
    968455 9f10:G (2.94) BS01 dna N/A GO:0003677 ... P06627 40425557
    968456 9f10:G (2.94) BS02 dna N/A GO:0003677 ... P06627 40425557
    968457 9f10:H (2.94) BS01 dna N/A GO:0003677 ... P14565 40425557
    968458 9f10:H (2.94) BS02 dna N/A GO:0003677 ... P14565 40425557
    968459 9f10:H (2.94) BS03 MG N/A GO:0003677 ... P14565 40425557
    968460 9f11:C (3.68) BS01 dna N/A GO:0000976 ... P0A6X7 40425557
    968461 9f11:C (3.68) BS02 dna N/A GO:0000976 ... P0A6X7 40425557
    968462 9f11:D (3.68) BS01 dna N/A GO:0003677 ... P0A6Y1 40425557
    968463 9f11:D (3.68) BS02 dna N/A GO:0003677 ... P0A6Y1 40425557
    968464 9f11:E (3.68) BS01 dna N/A GO:0003677 ... P06627 40425557
    968465 9f11:E (3.68) BS02 dna N/A GO:0003677 ... P06627 40425557
    968466 9f11:F (3.68) BS01 dna N/A GO:0003677 ... P06627 40425557
    968467 9f11:F (3.68) BS02 dna N/A GO:0003677 ... P06627 40425557
    968468 9f11:G (3.68) BS01 dna N/A GO:0003677 ... P06627 40425557
    968469 9f11:G (3.68) BS02 dna N/A GO:0003677 ... P06627 40425557
    968470 9f11:H (3.68) BS01 dna N/A GO:0003677 ... P14565 40425557
    968471 9f11:H (3.68) BS02 dna N/A GO:0003677 ... P14565 40425557
    968472 9f11:H (3.68) BS03 MG N/A GO:0003677 ... P14565 40425557
    968473 9f12:C (3.42) BS01 dna N/A GO:0000976 ... P0A6X7 40425557
    968474 9f12:C (3.42) BS02 dna N/A GO:0000976 ... P0A6X7 40425557
    968475 9f12:D (3.42) BS01 dna N/A GO:0003677 ... P0A6Y1 40425557
    968476 9f12:D (3.42) BS02 dna N/A GO:0003677 ... P0A6Y1 40425557
    968477 9f12:E (3.42) BS01 dna N/A GO:0003677 ... P06627 40425557
    968478 9f12:E (3.42) BS02 dna N/A GO:0003677 ... P06627 40425557
    968479 9f12:F (3.42) BS01 dna N/A GO:0003677 ... P06627 40425557
    968480 9f12:F (3.42) BS02 dna N/A GO:0003677 ... P06627 40425557
    968481 9f12:G (3.42) BS01 dna N/A GO:0003677 ... P06627 40425557
    968482 9f12:G (3.42) BS02 dna N/A GO:0003677 ... P06627 40425557
    968483 9f12:H (3.42) BS01 dna N/A GO:0003677 ... P14565 40425557
    968484 9f12:H (3.42) BS02 dna N/A GO:0003677 ... P14565 40425557
    968485 9f12:H (3.42) BS03 MG N/A GO:0003677 ... P14565 40425557
    968486 9f13:A (1.61) BS01 peptide N/A GO:0006955 ... Q546I6 40877317
    968487 9f14:A (2.3) BS01 SAC N/A GO:0000976 ... P45600 38976018
    968488 9f14:B (2.3) BS01 SAC N/A GO:0000976 ... P45600 38976018
    968489 9f15:A (1.93) BS01 A1H9O N/A GO:0004064 ... P00918 N/A
    968490 9f15:A (1.93) BS02 ZN N/A GO:0004064 ... P00918 N/A
    968491 9f15:A (1.93) BS03 ZN N/A GO:0004064 ... P00918 N/A
    968492 9f17:A (1.7) BS01 CA N/A GO:0000166 ... P56137 39062851
    968493 9f17:A (1.7) BS02 GDP N/A GO:0000166 ... P56137 39062851
    968494 9f17:A (1.7) BS03 IMP N/A GO:0000166 ... P56137 39062851
    968495 9f17:B (1.7) BS01 CA N/A GO:0000166 ... P56137 39062851
    968496 9f17:B (1.7) BS02 IMP N/A GO:0000166 ... P56137 39062851
    968497 9f17:B (1.7) BS03 GDP N/A GO:0000166 ... P56137 39062851
    968498 9f19:A (2.75) BS01 A1H8X N/A GO:0004843 ... P54578
    Q70CQ3
    Q9P2H5
    40325251
    968499 9f19:B (2.75) BS01 A1H8X N/A GO:0004843 ... N/A 40325251
    968500 9f1a:A (2.8) BS01 A1H8Y N/A GO:0003824 ... P34913 41128518
    968501 9f1a:B (2.8) BS01 A1H8Y N/A GO:0003824 ... P34913 41128518
    968502 9f1b:AA (3.01) BS01 rna N/A GO:0003735 ... G1TZ76 39169182
    968503 9f1b:AB (3.01) BS01 rna N/A GO:0000028 ... G1TIB4 39169182
    968504 9f1b:AC (3.01) BS01 rna N/A GO:0003735 ... G1SK22 39169182
    968505 9f1b:AC (3.01) BS02 ZN N/A GO:0003735 ... G1SK22 39169182
    968506 9f1b:AD (3.01) BS01 rna N/A GO:0003735 ... G1T8A2 39169182
    968507 9f1b:AE (3.01) BS01 rna N/A GO:0003735 ... N/A 39169182
    968508 9f1b:AE (3.01) BS02 ZN N/A GO:0003735 ... N/A 39169182
    968509 9f1b:AF (3.01) BS01 rna N/A GO:0001891 ... G1SJB4 39169182
    968510 9f1b:AG (3.01) BS01 rna N/A GO:0002181 ... G1U7M4 39169182
    968511 9f1b:AG (3.01) BS02 ZN N/A GO:0002181 ... G1U7M4 39169182
    968512 9f1b:AZ (3.01) BS01 rna N/A GO:0000028 ... G1TLT8 39169182
    968513 9f1b:Aa (3.01) BS01 rna N/A GO:0003735 ... G1SS70 39169182
    968514 9f1b:Ab (3.01) BS01 rna N/A GO:0003723 ... N/A 39169182
    968515 9f1b:Ac (3.01) BS01 rna N/A GO:0003723 ... G1TNM3 39169182
    968516 9f1b:Ad (3.01) BS01 rna N/A GO:0003723 ... G1TK17 39169182
    968517 9f1b:Ae (3.01) BS01 rna N/A GO:0003723 ... G1TFM5 39169182
    968518 9f1b:Af (3.01) BS01 rna N/A GO:0003735 ... G1TM55 39169182
    968519 9f1b:Ag (3.01) BS01 rna N/A GO:0003735 ... G1SVB0 39169182
    968520 9f1b:Ah (3.01) BS01 rna N/A GO:0003735 ... G1TJW1 39169182
    968521 9f1b:Ah (3.01) BS02 rna N/A GO:0003735 ... G1TJW1 39169182
    968522 9f1b:Ai (3.01) BS01 rna N/A GO:0003723 ... B7NZS8 39169182
    968523 9f1b:Aj (3.01) BS01 rna N/A GO:0003723 ... G1TPV3 39169182
    968524 9f1b:Ak (3.01) BS01 rna N/A GO:0003735 ... G1TRM4 39169182
    968525 9f1b:Al (3.01) BS01 rna N/A GO:0003735 ... G1SFR8 39169182
    968526 9f1b:Am (3.01) BS01 rna N/A GO:0003735 ... G1SP51 39169182
    968527 9f1b:Am (3.01) BS02 rna N/A GO:0003735 ... G1SP51 39169182
    968528 9f1b:An (3.01) BS01 rna N/A GO:0003735 ... A0AAA9WYR1 39169182
    968529 9f1b:Ao (3.01) BS01 rna N/A GO:0000028 ... G1U0Q2 39169182
    968530 9f1b:Ao (3.01) BS02 rna N/A GO:0000028 ... G1U0Q2 39169182
    968531 9f1b:Ap (3.01) BS01 rna N/A GO:0000462 ... G1SGX4 39169182
    968532 9f1b:Aq (3.01) BS01 rna N/A GO:0003735 ... G1TU13 39169182
    968533 9f1b:Ar (3.01) BS01 rna N/A GO:0003676 ... G1TPG3 39169182
    968534 9f1b:As (3.01) BS01 rna N/A GO:0000028 ... G1TN62 39169182
    968535 9f1b:At (3.01) BS01 rna N/A GO:0003723 ... G1SIZ2 39169182
    968536 9f1b:Av (3.01) BS01 rna N/A GO:0003735 ... G1TG89 39169182
    968537 9f1b:Aw (3.01) BS01 rna N/A GO:0003735 ... G1SZ47 39169182
    968538 9f1b:Ax (3.01) BS01 rna N/A GO:0003735 ... G1T3D8 39169182
    968539 9f1b:Ay (3.01) BS01 rna N/A GO:0003735 ... G1TDB3 39169182
    968540 9f1b:Ay (3.01) BS02 rna N/A GO:0003735 ... G1TDB3 39169182
    968541 9f1b:B (3.01) BS01 rna N/A GO:0000027 ... G1SZF4 39169182
    968542 9f1b:B (3.01) BS02 rna N/A GO:0000027 ... G1SZF4 39169182
    968543 9f1b:B (3.01) BS03 GTP N/A GO:0000027 ... G1SZF4 39169182
    968544 9f1b:BA (3.01) BS01 rna N/A GO:0002181 ... G1TT27 39169182
    968545 9f1b:BA (3.01) BS02 rna N/A GO:0002181 ... G1TT27 39169182
    968546 9f1b:BB (3.01) BS01 rna N/A GO:0003723 ... G1TL06 39169182
    968547 9f1b:BC (3.01) BS01 rna N/A GO:0003735 ... G1SVW5 39169182
    968548 9f1b:BC (3.01) BS02 rna N/A GO:0003735 ... G1SVW5 39169182
    968549 9f1b:BE (3.01) BS01 rna N/A GO:0000027 ... G1SKF7 39169182
    968550 9f1b:BF (3.01) BS01 rna N/A GO:0000463 ... G1TUB1 39169182
    968551 9f1b:BF (3.01) BS02 rna N/A GO:0000463 ... G1TUB1 39169182
    968552 9f1b:BG (3.01) BS01 rna N/A GO:0003723 ... N/A 39169182
    968553 9f1b:BG (3.01) BS02 rna N/A GO:0003723 ... N/A 39169182
    968554 9f1b:BH (3.01) BS01 rna N/A GO:0002181 ... G1SWI6 39169182
    968555 9f1b:BI (3.01) BS01 rna N/A GO:0003735 ... B7NZQ2 39169182
    968556 9f1b:BI (3.01) BS02 rna N/A GO:0003735 ... B7NZQ2 39169182
    968557 9f1b:BI (3.01) BS03 rna N/A GO:0003735 ... B7NZQ2 39169182
    968558 9f1b:BJ (3.01) BS01 rna N/A GO:0003735 ... G1TUB8 39169182
    968559 9f1b:BJ (3.01) BS02 rna N/A GO:0003735 ... G1TUB8 39169182
    968560 9f1b:BJ (3.01) BS03 rna N/A GO:0003735 ... G1TUB8 39169182
    968561 9f1b:BL (3.01) BS01 rna N/A GO:0003723 ... G1TKB3 39169182
    968562 9f1b:BL (3.01) BS02 rna N/A GO:0003723 ... G1TKB3 39169182
    968563 9f1b:BM (3.01) BS01 rna N/A GO:0003723 ... G1SZ12 39169182
    968564 9f1b:BN (3.01) BS01 rna N/A GO:0002181 ... G1T0C1 39169182
    968565 9f1b:BN (3.01) BS02 rna N/A GO:0002181 ... G1T0C1 39169182
    968566 9f1b:BO (3.01) BS01 rna N/A GO:0003729 ... G1TVS8 39169182
    968567 9f1b:BP (3.01) BS01 rna N/A GO:0002181 ... G1SCJ6 39169182
    968568 9f1b:BP (3.01) BS02 rna N/A GO:0002181 ... G1SCJ6 39169182
    968569 9f1b:BQ (3.01) BS01 rna N/A GO:0003735 ... N/A 39169182
    968570 9f1b:BR (3.01) BS01 rna N/A GO:0003723 ... G1TJR3 39169182
    968571 9f1b:BR (3.01) BS02 rna N/A GO:0003723 ... G1TJR3 39169182
    968572 9f1b:BS (3.01) BS01 rna N/A GO:0003735 ... G1TTY7 39169182
    968573 9f1b:BS (3.01) BS02 rna N/A GO:0003735 ... G1TTY7 39169182
    968574 9f1b:BT (3.01) BS01 rna N/A GO:0003735 ... G1SHQ2 39169182
    968575 9f1b:BT (3.01) BS02 rna N/A GO:0003735 ... G1SHQ2 39169182
    968576 9f1b:BU (3.01) BS01 rna N/A GO:0002181 ... G1TSG1 39169182
    968577 9f1b:BV (3.01) BS01 rna N/A GO:0000122 ... G1T6D1 39169182
    968578 9f1b:BW (3.01) BS01 rna N/A GO:0002181 ... G1SE28 39169182
    968579 9f1b:BW (3.01) BS02 rna N/A GO:0002181 ... G1SE28 39169182
    968580 9f1b:BX (3.01) BS01 rna N/A GO:0003735 ... G1SE76 39169182
    968581 9f1b:BX (3.01) BS02 rna N/A GO:0003735 ... G1SE76 39169182
    968582 9f1b:BY (3.01) BS01 rna N/A GO:0003723 ... G1SQH0 39169182
    968583 9f1b:BY (3.01) BS02 rna N/A GO:0003723 ... G1SQH0 39169182
    968584 9f1b:BZ (3.01) BS01 rna N/A GO:0002181 ... G1TXF6 39169182
    968585 9f1b:Ba (3.01) BS01 rna N/A GO:0003735 ... G1SNY0 39169182
    968586 9f1b:Bb (3.01) BS01 rna N/A GO:0002181 ... G1SGR6 39169182
    968587 9f1b:Bc (3.01) BS01 rna N/A GO:0003723 ... G1TDL2 39169182
    968588 9f1b:Bc (3.01) BS02 rna N/A GO:0003723 ... G1TDL2 39169182
    968589 9f1b:Bd (3.01) BS01 rna N/A GO:0002181 ... G1SHG0 39169182
    968590 9f1b:Be (3.01) BS01 rna N/A GO:0003735 ... G1U6S0 39169182
    968591 9f1b:Bf (3.01) BS01 rna N/A GO:0003735 ... G1SF08 39169182
    968592 9f1b:Bg (3.01) BS01 rna N/A GO:0003735 ... G1TXG5 39169182
    968593 9f1b:Bg (3.01) BS02 ZN N/A GO:0003735 ... G1TXG5 39169182
    968594 9f1b:Bh (3.01) BS01 rna N/A GO:0000463 ... G1SIT5 39169182
    968595 9f1b:Bh (3.01) BS02 rna N/A GO:0000463 ... G1SIT5 39169182
    968596 9f1b:Bi (3.01) BS01 rna N/A GO:0003735 ... G1TTQ5 39169182
    968597 9f1b:Bj (3.01) BS01 rna N/A GO:0002181 ... U3KPD5 39169182
    968598 9f1b:Bj (3.01) BS02 rna N/A GO:0002181 ... U3KPD5 39169182
    968599 9f1b:Bj (3.01) BS03 ZN N/A GO:0002181 ... U3KPD5 39169182
    968600 9f1b:Bk (3.01) BS01 rna N/A GO:0003735 ... G1U001 39169182

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).