SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    968601 9f1b:Bl (3.01) BS01 rna N/A GO:0003735 ... G1TTN1 39169182
    968602 9f1b:Bl (3.01) BS02 rna N/A GO:0003735 ... G1TTN1 39169182
    968603 9f1b:Bl (3.01) BS03 peptide N/A GO:0003735 ... G1TTN1 39169182
    968604 9f1b:Bm (3.01) BS01 rna N/A GO:0003735 ... P0DXC2 39169182
    968605 9f1b:Bm (3.01) BS02 ZN N/A GO:0003735 ... P0DXC2 39169182
    968606 9f1b:Bo (3.01) BS01 rna N/A GO:0003735 ... A0AAA9WX15 39169182
    968607 9f1b:Bo (3.01) BS02 ZN N/A GO:0003735 ... A0AAA9WX15 39169182
    968608 9f1b:Bp (3.01) BS01 rna N/A GO:0003735 ... G1SY53 39169182
    968609 9f1b:Bp (3.01) BS02 ZN N/A GO:0003735 ... G1SY53 39169182
    968610 9f1b:Br (3.01) BS01 rna N/A GO:0003735 ... G1U7L1 39169182
    968611 9f1b:Bs (3.01) BS01 rna N/A GO:0000027 ... G1SPK4 39169182
    968612 9f1b:Bt (3.01) BS01 rna N/A GO:0003735 ... G1SMR7 39169182
    968613 9f1b:Cu (3.01) BS01 rna N/A N/A P20290 39169182
    968614 9f1b:DB (3.01) BS01 rna N/A GO:0003723 ... Q9BXJ9 39169182
    968615 9f1b:DB (3.01) BS02 IHP N/A GO:0003723 ... Q9BXJ9 39169182
    968616 9f1c:AA (3.78) BS01 rna N/A GO:0003735 ... G1TZ76 39169182
    968617 9f1c:AB (3.78) BS01 rna N/A GO:0000028 ... G1TIB4 39169182
    968618 9f1c:AC (3.78) BS01 rna N/A GO:0003735 ... G1SK22 39169182
    968619 9f1c:AC (3.78) BS02 ZN N/A GO:0003735 ... G1SK22 39169182
    968620 9f1c:AD (3.78) BS01 rna N/A GO:0003735 ... G1T8A2 39169182
    968621 9f1c:AE (3.78) BS01 rna N/A GO:0003735 ... N/A 39169182
    968622 9f1c:AE (3.78) BS02 ZN N/A GO:0003735 ... N/A 39169182
    968623 9f1c:AF (3.78) BS01 rna N/A GO:0001891 ... G1SJB4 39169182
    968624 9f1c:AG (3.78) BS01 rna N/A GO:0002181 ... G1U7M4 39169182
    968625 9f1c:AG (3.78) BS02 ZN N/A GO:0002181 ... G1U7M4 39169182
    968626 9f1c:AZ (3.78) BS01 rna N/A GO:0000028 ... G1TLT8 39169182
    968627 9f1c:Aa (3.78) BS01 rna N/A GO:0003735 ... G1SS70 39169182
    968628 9f1c:Ab (3.78) BS01 rna N/A GO:0003723 ... N/A 39169182
    968629 9f1c:Ac (3.78) BS01 rna N/A GO:0003723 ... G1TNM3 39169182
    968630 9f1c:Ad (3.78) BS01 rna N/A GO:0003723 ... G1TK17 39169182
    968631 9f1c:Ae (3.78) BS01 rna N/A GO:0003723 ... G1TFM5 39169182
    968632 9f1c:Af (3.78) BS01 rna N/A GO:0003735 ... G1TM55 39169182
    968633 9f1c:Ag (3.78) BS01 rna N/A GO:0003735 ... G1SVB0 39169182
    968634 9f1c:Ah (3.78) BS01 rna N/A GO:0003735 ... G1TJW1 39169182
    968635 9f1c:Ah (3.78) BS02 rna N/A GO:0003735 ... G1TJW1 39169182
    968636 9f1c:Ai (3.78) BS01 rna N/A GO:0003723 ... B7NZS8 39169182
    968637 9f1c:Aj (3.78) BS01 rna N/A GO:0003723 ... G1TPV3 39169182
    968638 9f1c:Ak (3.78) BS01 rna N/A GO:0003735 ... G1TRM4 39169182
    968639 9f1c:Al (3.78) BS01 rna N/A GO:0003735 ... G1SFR8 39169182
    968640 9f1c:Am (3.78) BS01 rna N/A GO:0003735 ... G1SP51 39169182
    968641 9f1c:Am (3.78) BS02 rna N/A GO:0003735 ... G1SP51 39169182
    968642 9f1c:An (3.78) BS01 rna N/A GO:0003735 ... A0AAA9WYR1 39169182
    968643 9f1c:Ao (3.78) BS01 rna N/A GO:0000028 ... G1U0Q2 39169182
    968644 9f1c:Ao (3.78) BS02 rna N/A GO:0000028 ... G1U0Q2 39169182
    968645 9f1c:Ap (3.78) BS01 rna N/A GO:0000462 ... G1SGX4 39169182
    968646 9f1c:Aq (3.78) BS01 rna N/A GO:0003735 ... G1TU13 39169182
    968647 9f1c:Ar (3.78) BS01 rna N/A GO:0003676 ... G1TPG3 39169182
    968648 9f1c:As (3.78) BS01 rna N/A GO:0000028 ... G1TN62 39169182
    968649 9f1c:At (3.78) BS01 rna N/A GO:0003723 ... G1SIZ2 39169182
    968650 9f1c:Av (3.78) BS01 rna N/A GO:0003735 ... G1TG89 39169182
    968651 9f1c:Aw (3.78) BS01 rna N/A GO:0003735 ... G1SZ47 39169182
    968652 9f1c:Ax (3.78) BS01 rna N/A GO:0003735 ... G1T3D8 39169182
    968653 9f1c:Ay (3.78) BS01 rna N/A GO:0003735 ... G1TDB3 39169182
    968654 9f1c:Ay (3.78) BS02 rna N/A GO:0003735 ... G1TDB3 39169182
    968655 9f1c:B (3.78) BS01 rna N/A GO:0000027 ... G1SZF4 39169182
    968656 9f1c:B (3.78) BS02 rna N/A GO:0000027 ... G1SZF4 39169182
    968657 9f1c:B (3.78) BS03 GTP N/A GO:0000027 ... G1SZF4 39169182
    968658 9f1c:BA (3.78) BS01 rna N/A GO:0002181 ... G1TT27 39169182
    968659 9f1c:BA (3.78) BS02 rna N/A GO:0002181 ... G1TT27 39169182
    968660 9f1c:BB (3.78) BS01 rna N/A GO:0003723 ... G1TL06 39169182
    968661 9f1c:BC (3.78) BS01 rna N/A GO:0003735 ... G1SVW5 39169182
    968662 9f1c:BC (3.78) BS02 rna N/A GO:0003735 ... G1SVW5 39169182
    968663 9f1c:BE (3.78) BS01 rna N/A GO:0000027 ... G1SKF7 39169182
    968664 9f1c:BF (3.78) BS01 rna N/A GO:0000463 ... G1TUB1 39169182
    968665 9f1c:BF (3.78) BS02 rna N/A GO:0000463 ... G1TUB1 39169182
    968666 9f1c:BG (3.78) BS01 rna N/A GO:0003723 ... N/A 39169182
    968667 9f1c:BG (3.78) BS02 rna N/A GO:0003723 ... N/A 39169182
    968668 9f1c:BH (3.78) BS01 rna N/A GO:0002181 ... G1SWI6 39169182
    968669 9f1c:BI (3.78) BS01 rna N/A GO:0003735 ... B7NZQ2 39169182
    968670 9f1c:BI (3.78) BS02 rna N/A GO:0003735 ... B7NZQ2 39169182
    968671 9f1c:BI (3.78) BS03 rna N/A GO:0003735 ... B7NZQ2 39169182
    968672 9f1c:BJ (3.78) BS01 rna N/A GO:0003735 ... G1TUB8 39169182
    968673 9f1c:BJ (3.78) BS02 rna N/A GO:0003735 ... G1TUB8 39169182
    968674 9f1c:BJ (3.78) BS03 rna N/A GO:0003735 ... G1TUB8 39169182
    968675 9f1c:BK (3.78) BS01 rna N/A N/A N/A 39169182
    968676 9f1c:BK (3.78) BS02 rna N/A N/A N/A 39169182
    968677 9f1c:BL (3.78) BS01 rna N/A GO:0003723 ... G1TKB3 39169182
    968678 9f1c:BL (3.78) BS02 rna N/A GO:0003723 ... G1TKB3 39169182
    968679 9f1c:BM (3.78) BS01 rna N/A GO:0003723 ... G1SZ12 39169182
    968680 9f1c:BN (3.78) BS01 rna N/A GO:0002181 ... G1T0C1 39169182
    968681 9f1c:BN (3.78) BS02 rna N/A GO:0002181 ... G1T0C1 39169182
    968682 9f1c:BO (3.78) BS01 rna N/A GO:0003729 ... G1TVS8 39169182
    968683 9f1c:BP (3.78) BS01 rna N/A GO:0002181 ... G1SCJ6 39169182
    968684 9f1c:BP (3.78) BS02 rna N/A GO:0002181 ... G1SCJ6 39169182
    968685 9f1c:BQ (3.78) BS01 rna N/A GO:0003735 ... N/A 39169182
    968686 9f1c:BR (3.78) BS01 rna N/A GO:0003723 ... G1TJR3 39169182
    968687 9f1c:BR (3.78) BS02 rna N/A GO:0003723 ... G1TJR3 39169182
    968688 9f1c:BS (3.78) BS01 rna N/A GO:0003735 ... G1TTY7 39169182
    968689 9f1c:BS (3.78) BS02 rna N/A GO:0003735 ... G1TTY7 39169182
    968690 9f1c:BT (3.78) BS01 rna N/A GO:0003735 ... G1SHQ2 39169182
    968691 9f1c:BT (3.78) BS02 rna N/A GO:0003735 ... G1SHQ2 39169182
    968692 9f1c:BU (3.78) BS01 rna N/A GO:0002181 ... G1TSG1 39169182
    968693 9f1c:BV (3.78) BS01 rna N/A GO:0000122 ... G1T6D1 39169182
    968694 9f1c:BW (3.78) BS01 rna N/A GO:0002181 ... G1SE28 39169182
    968695 9f1c:BW (3.78) BS02 rna N/A GO:0002181 ... G1SE28 39169182
    968696 9f1c:BX (3.78) BS01 rna N/A GO:0003735 ... G1SE76 39169182
    968697 9f1c:BX (3.78) BS02 rna N/A GO:0003735 ... G1SE76 39169182
    968698 9f1c:BY (3.78) BS01 rna N/A GO:0003723 ... G1SQH0 39169182
    968699 9f1c:BY (3.78) BS02 rna N/A GO:0003723 ... G1SQH0 39169182
    968700 9f1c:BZ (3.78) BS01 rna N/A GO:0002181 ... G1TXF6 39169182
    968701 9f1c:Ba (3.78) BS01 rna N/A GO:0003735 ... G1SNY0 39169182
    968702 9f1c:Bb (3.78) BS01 rna N/A GO:0002181 ... G1SGR6 39169182
    968703 9f1c:Bc (3.78) BS01 rna N/A GO:0003723 ... G1TDL2 39169182
    968704 9f1c:Bd (3.78) BS01 rna N/A GO:0002181 ... G1SHG0 39169182
    968705 9f1c:Be (3.78) BS01 rna N/A GO:0003735 ... A0AAA9WVN6 39169182
    968706 9f1c:Bf (3.78) BS01 rna N/A GO:0003735 ... G1SF08 39169182
    968707 9f1c:Bg (3.78) BS01 rna N/A GO:0003735 ... G1TXG5 39169182
    968708 9f1c:Bg (3.78) BS02 ZN N/A GO:0003735 ... G1TXG5 39169182
    968709 9f1c:Bh (3.78) BS01 rna N/A GO:0000463 ... G1SIT5 39169182
    968710 9f1c:Bh (3.78) BS02 rna N/A GO:0000463 ... G1SIT5 39169182
    968711 9f1c:Bi (3.78) BS01 rna N/A GO:0003735 ... G1TTQ5 39169182
    968712 9f1c:Bj (3.78) BS01 rna N/A GO:0002181 ... U3KPD5 39169182
    968713 9f1c:Bj (3.78) BS02 rna N/A GO:0002181 ... U3KPD5 39169182
    968714 9f1c:Bj (3.78) BS03 ZN N/A GO:0002181 ... U3KPD5 39169182
    968715 9f1c:Bk (3.78) BS01 rna N/A GO:0003735 ... G1U001 39169182
    968716 9f1c:Bl (3.78) BS01 rna N/A GO:0003735 ... G1TTN1 39169182
    968717 9f1c:Bl (3.78) BS02 rna N/A GO:0003735 ... G1TTN1 39169182
    968718 9f1c:Bm (3.78) BS01 rna N/A GO:0003735 ... P0DXC2 39169182
    968719 9f1c:Bm (3.78) BS02 ZN N/A GO:0003735 ... P0DXC2 39169182
    968720 9f1c:Bo (3.78) BS01 rna N/A GO:0003735 ... A0AAA9WX15 39169182
    968721 9f1c:Bo (3.78) BS02 ZN N/A GO:0003735 ... A0AAA9WX15 39169182
    968722 9f1c:Bp (3.78) BS01 rna N/A GO:0003735 ... G1SY53 39169182
    968723 9f1c:Bp (3.78) BS02 ZN N/A GO:0003735 ... G1SY53 39169182
    968724 9f1c:Br (3.78) BS01 rna N/A GO:0003735 ... G1U7L1 39169182
    968725 9f1c:Bs (3.78) BS01 rna N/A GO:0000027 ... G1SPK4 39169182
    968726 9f1c:Bt (3.78) BS01 rna N/A GO:0003735 ... G1SMR7 39169182
    968727 9f1c:Cu (3.78) BS01 rna N/A N/A P20290 39169182
    968728 9f1c:DB (3.78) BS01 rna N/A GO:0003723 ... Q9BXJ9 39169182
    968729 9f1c:DB (3.78) BS02 IHP N/A GO:0003723 ... Q9BXJ9 39169182
    968730 9f1d:AA (3.26) BS01 rna N/A GO:0003735 ... G1TZ76 39169182
    968731 9f1d:AB (3.26) BS01 rna N/A GO:0000028 ... G1TIB4 39169182
    968732 9f1d:AC (3.26) BS01 rna N/A GO:0003735 ... G1SK22 39169182
    968733 9f1d:AC (3.26) BS02 ZN N/A GO:0003735 ... G1SK22 39169182
    968734 9f1d:AD (3.26) BS01 rna N/A GO:0003735 ... G1T8A2 39169182
    968735 9f1d:AE (3.26) BS01 rna N/A GO:0003735 ... N/A 39169182
    968736 9f1d:AE (3.26) BS02 ZN N/A GO:0003735 ... N/A 39169182
    968737 9f1d:AF (3.26) BS01 rna N/A GO:0001891 ... G1SJB4 39169182
    968738 9f1d:AG (3.26) BS01 rna N/A GO:0002181 ... G1U7M4 39169182
    968739 9f1d:AG (3.26) BS02 ZN N/A GO:0002181 ... G1U7M4 39169182
    968740 9f1d:AZ (3.26) BS01 rna N/A GO:0000028 ... G1TLT8 39169182
    968741 9f1d:Aa (3.26) BS01 rna N/A GO:0003735 ... G1SS70 39169182
    968742 9f1d:Ab (3.26) BS01 rna N/A GO:0003723 ... N/A 39169182
    968743 9f1d:Ac (3.26) BS01 rna N/A GO:0003723 ... G1TNM3 39169182
    968744 9f1d:Ad (3.26) BS01 rna N/A GO:0003723 ... G1TK17 39169182
    968745 9f1d:Ae (3.26) BS01 rna N/A GO:0003723 ... G1TFM5 39169182
    968746 9f1d:Af (3.26) BS01 rna N/A GO:0003735 ... G1TM55 39169182
    968747 9f1d:Ag (3.26) BS01 rna N/A GO:0003735 ... G1SVB0 39169182
    968748 9f1d:Ah (3.26) BS01 rna N/A GO:0003735 ... G1TJW1 39169182
    968749 9f1d:Ah (3.26) BS02 rna N/A GO:0003735 ... G1TJW1 39169182
    968750 9f1d:Ai (3.26) BS01 rna N/A GO:0003723 ... B7NZS8 39169182
    968751 9f1d:Aj (3.26) BS01 rna N/A GO:0003723 ... G1TPV3 39169182
    968752 9f1d:Ak (3.26) BS01 rna N/A GO:0003735 ... G1TRM4 39169182
    968753 9f1d:Al (3.26) BS01 rna N/A GO:0003735 ... G1SFR8 39169182
    968754 9f1d:Am (3.26) BS01 rna N/A GO:0003735 ... G1SP51 39169182
    968755 9f1d:Am (3.26) BS02 rna N/A GO:0003735 ... G1SP51 39169182
    968756 9f1d:An (3.26) BS01 rna N/A GO:0003735 ... A0AAA9WYR1 39169182
    968757 9f1d:Ao (3.26) BS01 rna N/A GO:0000028 ... G1U0Q2 39169182
    968758 9f1d:Ao (3.26) BS02 rna N/A GO:0000028 ... G1U0Q2 39169182
    968759 9f1d:Ap (3.26) BS01 rna N/A GO:0000462 ... G1SGX4 39169182
    968760 9f1d:Aq (3.26) BS01 rna N/A GO:0003735 ... G1TU13 39169182
    968761 9f1d:Ar (3.26) BS01 rna N/A GO:0003676 ... G1TPG3 39169182
    968762 9f1d:As (3.26) BS01 rna N/A GO:0000028 ... G1TN62 39169182
    968763 9f1d:At (3.26) BS01 rna N/A GO:0003723 ... G1SIZ2 39169182
    968764 9f1d:Av (3.26) BS01 rna N/A GO:0003735 ... G1TG89 39169182
    968765 9f1d:Aw (3.26) BS01 rna N/A GO:0003735 ... G1SZ47 39169182
    968766 9f1d:Ax (3.26) BS01 rna N/A GO:0003735 ... G1T3D8 39169182
    968767 9f1d:Ay (3.26) BS01 rna N/A GO:0003735 ... G1TDB3 39169182
    968768 9f1d:Ay (3.26) BS02 rna N/A GO:0003735 ... G1TDB3 39169182
    968769 9f1d:B (3.26) BS01 rna N/A GO:0000027 ... G1SZF4 39169182
    968770 9f1d:B (3.26) BS02 rna N/A GO:0000027 ... G1SZF4 39169182
    968771 9f1d:B (3.26) BS03 GTP N/A GO:0000027 ... G1SZF4 39169182
    968772 9f1d:BA (3.26) BS01 rna N/A GO:0002181 ... G1TT27 39169182
    968773 9f1d:BA (3.26) BS02 rna N/A GO:0002181 ... G1TT27 39169182
    968774 9f1d:BB (3.26) BS01 rna N/A GO:0003723 ... G1TL06 39169182
    968775 9f1d:BC (3.26) BS01 rna N/A GO:0003735 ... G1SVW5 39169182
    968776 9f1d:BC (3.26) BS02 rna N/A GO:0003735 ... G1SVW5 39169182
    968777 9f1d:BE (3.26) BS01 rna N/A GO:0000027 ... G1SKF7 39169182
    968778 9f1d:BF (3.26) BS01 rna N/A GO:0000463 ... G1TUB1 39169182
    968779 9f1d:BF (3.26) BS02 rna N/A GO:0000463 ... G1TUB1 39169182
    968780 9f1d:BG (3.26) BS01 rna N/A GO:0003723 ... N/A 39169182
    968781 9f1d:BG (3.26) BS02 rna N/A GO:0003723 ... N/A 39169182
    968782 9f1d:BH (3.26) BS01 rna N/A GO:0002181 ... G1SWI6 39169182
    968783 9f1d:BI (3.26) BS01 rna N/A GO:0003735 ... B7NZQ2 39169182
    968784 9f1d:BI (3.26) BS02 rna N/A GO:0003735 ... B7NZQ2 39169182
    968785 9f1d:BI (3.26) BS03 rna N/A GO:0003735 ... B7NZQ2 39169182
    968786 9f1d:BJ (3.26) BS01 rna N/A GO:0003735 ... G1TUB8 39169182
    968787 9f1d:BJ (3.26) BS02 rna N/A GO:0003735 ... G1TUB8 39169182
    968788 9f1d:BJ (3.26) BS03 rna N/A GO:0003735 ... G1TUB8 39169182
    968789 9f1d:BL (3.26) BS01 rna N/A GO:0003723 ... G1TKB3 39169182
    968790 9f1d:BL (3.26) BS02 rna N/A GO:0003723 ... G1TKB3 39169182
    968791 9f1d:BM (3.26) BS01 rna N/A GO:0003723 ... G1SZ12 39169182
    968792 9f1d:BN (3.26) BS01 rna N/A GO:0002181 ... G1T0C1 39169182
    968793 9f1d:BN (3.26) BS02 rna N/A GO:0002181 ... G1T0C1 39169182
    968794 9f1d:BO (3.26) BS01 rna N/A GO:0003729 ... G1TVS8 39169182
    968795 9f1d:BP (3.26) BS01 rna N/A GO:0002181 ... G1SCJ6 39169182
    968796 9f1d:BP (3.26) BS02 rna N/A GO:0002181 ... G1SCJ6 39169182
    968797 9f1d:BQ (3.26) BS01 rna N/A GO:0003735 ... N/A 39169182
    968798 9f1d:BR (3.26) BS01 rna N/A GO:0003723 ... G1TJR3 39169182
    968799 9f1d:BR (3.26) BS02 rna N/A GO:0003723 ... G1TJR3 39169182
    968800 9f1d:BS (3.26) BS01 rna N/A GO:0003735 ... G1TTY7 39169182

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).