SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    968801 9f1d:BS (3.26) BS02 rna N/A GO:0003735 ... G1TTY7 39169182
    968802 9f1d:BT (3.26) BS01 rna N/A GO:0003735 ... G1SHQ2 39169182
    968803 9f1d:BT (3.26) BS02 rna N/A GO:0003735 ... G1SHQ2 39169182
    968804 9f1d:BU (3.26) BS01 rna N/A GO:0002181 ... G1TSG1 39169182
    968805 9f1d:BV (3.26) BS01 rna N/A GO:0000122 ... G1T6D1 39169182
    968806 9f1d:BW (3.26) BS01 rna N/A GO:0002181 ... G1SE28 39169182
    968807 9f1d:BW (3.26) BS02 rna N/A GO:0002181 ... G1SE28 39169182
    968808 9f1d:BX (3.26) BS01 rna N/A GO:0003735 ... G1SE76 39169182
    968809 9f1d:BX (3.26) BS02 rna N/A GO:0003735 ... G1SE76 39169182
    968810 9f1d:BY (3.26) BS01 rna N/A GO:0003723 ... G1SQH0 39169182
    968811 9f1d:BY (3.26) BS02 rna N/A GO:0003723 ... G1SQH0 39169182
    968812 9f1d:BZ (3.26) BS01 rna N/A GO:0002181 ... G1TXF6 39169182
    968813 9f1d:Ba (3.26) BS01 rna N/A GO:0003735 ... G1SNY0 39169182
    968814 9f1d:Bb (3.26) BS01 rna N/A GO:0002181 ... G1SGR6 39169182
    968815 9f1d:Bc (3.26) BS01 rna N/A GO:0003723 ... G1TDL2 39169182
    968816 9f1d:Bd (3.26) BS01 rna N/A GO:0002181 ... G1SHG0 39169182
    968817 9f1d:Be (3.26) BS01 rna N/A GO:0003735 ... A0AAA9WVN6 39169182
    968818 9f1d:Bf (3.26) BS01 rna N/A GO:0003735 ... G1SF08 39169182
    968819 9f1d:Bg (3.26) BS01 rna N/A GO:0003735 ... G1TXG5 39169182
    968820 9f1d:Bg (3.26) BS02 ZN N/A GO:0003735 ... G1TXG5 39169182
    968821 9f1d:Bh (3.26) BS01 rna N/A GO:0000463 ... G1SIT5 39169182
    968822 9f1d:Bh (3.26) BS02 rna N/A GO:0000463 ... G1SIT5 39169182
    968823 9f1d:Bi (3.26) BS01 rna N/A GO:0003735 ... G1TTQ5 39169182
    968824 9f1d:Bj (3.26) BS01 rna N/A GO:0002181 ... U3KPD5 39169182
    968825 9f1d:Bj (3.26) BS02 rna N/A GO:0002181 ... U3KPD5 39169182
    968826 9f1d:Bj (3.26) BS03 ZN N/A GO:0002181 ... U3KPD5 39169182
    968827 9f1d:Bk (3.26) BS01 rna N/A GO:0003735 ... G1U001 39169182
    968828 9f1d:Bl (3.26) BS01 rna N/A GO:0003735 ... G1TTN1 39169182
    968829 9f1d:Bl (3.26) BS02 rna N/A GO:0003735 ... G1TTN1 39169182
    968830 9f1d:Bm (3.26) BS01 rna N/A GO:0003735 ... P0DXC2 39169182
    968831 9f1d:Bm (3.26) BS02 ZN N/A GO:0003735 ... P0DXC2 39169182
    968832 9f1d:Bo (3.26) BS01 rna N/A GO:0003735 ... A0AAA9WX15 39169182
    968833 9f1d:Bo (3.26) BS02 ZN N/A GO:0003735 ... A0AAA9WX15 39169182
    968834 9f1d:Bp (3.26) BS01 rna N/A GO:0003735 ... G1SY53 39169182
    968835 9f1d:Bp (3.26) BS02 ZN N/A GO:0003735 ... G1SY53 39169182
    968836 9f1d:Br (3.26) BS01 rna N/A GO:0003735 ... G1U7L1 39169182
    968837 9f1d:Bs (3.26) BS01 rna N/A GO:0000027 ... G1SPK4 39169182
    968838 9f1d:Bt (3.26) BS01 rna N/A GO:0003735 ... G1SMR7 39169182
    968839 9f1d:Cu (3.26) BS01 rna N/A N/A P20290 39169182
    968840 9f1d:DB (3.26) BS01 rna N/A GO:0003723 ... Q9BXJ9 39169182
    968841 9f1d:DB (3.26) BS02 IHP N/A GO:0003723 ... Q9BXJ9 39169182
    968842 9f1d:EA (3.26) BS01 rna N/A GO:0004177 ... P53582 39169182
    968843 9f1i:H (1.38) BS01 peptide N/A N/A N/A 39020051
    968844 9f1i:H (1.38) BS02 FUC N/A N/A N/A 39020051
    968845 9f1i:H (1.38) BS03 PFX N/A N/A N/A 39020051
    968846 9f1i:I (1.38) BS01 peptide N/A N/A N/A 39020051
    968847 9f1i:I (1.38) BS02 FUC N/A N/A N/A 39020051
    968848 9f1i:I (1.38) BS03 PFX N/A N/A N/A 39020051
    968849 9f1i:L (1.38) BS01 peptide N/A N/A N/A 39020051
    968850 9f1i:M (1.38) BS01 peptide N/A N/A N/A 39020051
    968851 9f1j:A (1.13003) BS01 A1H84 N/A N/A O60885 40244695
    968852 9f1k:A (1.61) BS01 A1H81 N/A N/A O60885 40244695
    968853 9f1l:A (1.30001) BS01 A1H83 N/A N/A O60885 40244695
    968854 9f1m:A (1.90001) BS01 A1H80 N/A N/A O60885 40244695
    968855 9f1m:B (1.90001) BS01 A1H80 N/A N/A O60885 40244695
    968856 9f1m:C (1.90001) BS01 A1H80 N/A N/A O60885 40244695
    968857 9f1m:D (1.90001) BS01 A1H80 N/A N/A O60885 40244695
    968858 9f1n:A (1.71) BS01 A1H9H N/A N/A O60885 40244695
    968859 9f1n:B (1.71) BS01 A1H9H N/A N/A O60885 40244695
    968860 9f1n:C (1.71) BS01 A1H9H N/A N/A O60885 40244695
    968861 9f1n:D (1.71) BS01 A1H9H N/A N/A O60885 40244695
    968862 9f1o:A (2.1) BS01 OXY N/A GO:0004601 ... Q88HV5 40933351
    968863 9f1o:A (2.1) BS02 HEM N/A GO:0004601 ... Q88HV5 40933351
    968864 9f1o:B (2.1) BS01 HEM N/A GO:0004601 ... Q88HV5 40933351
    968865 9f1q:A (2.35) BS01 HEM N/A GO:0004601 ... Q88HV5 40933351
    968866 9f1q:B (2.35) BS01 HEM N/A GO:0004601 ... Q88HV5 40933351
    968867 9f1q:C (2.35) BS01 HEM N/A GO:0004601 ... Q88HV5 40933351
    968868 9f1q:D (2.35) BS01 HEM N/A GO:0004601 ... Q88HV5 40933351
    968869 9f1r:A (3.67) BS01 FUL N/A GO:0001669 ... Q7L1I2 39934119
    968870 9f1t:A (3.0) BS01 CU N/A GO:0005507 ... Q04HQ8 39126090
    968871 9f1t:A (3.0) BS02 CU N/A GO:0005507 ... Q04HQ8 39126090
    968872 9f1t:A (3.0) BS03 CU N/A GO:0005507 ... Q04HQ8 39126090
    968873 9f1t:A (3.0) BS04 CU N/A GO:0005507 ... Q04HQ8 39126090
    968874 9f1t:B (3.0) BS01 CU N/A GO:0005507 ... Q04HQ8 39126090
    968875 9f1t:B (3.0) BS02 CU N/A GO:0005507 ... Q04HQ8 39126090
    968876 9f1t:B (3.0) BS03 CU N/A GO:0005507 ... Q04HQ8 39126090
    968877 9f1t:B (3.0) BS04 CU N/A GO:0005507 ... Q04HQ8 39126090
    968878 9f1u:A (3.67) BS01 rna N/A GO:0003677 ... Q8R5F7 40450684
    968879 9f1u:A (3.67) BS02 rna N/A GO:0003677 ... Q8R5F7 40450684
    968880 9f1u:A (3.67) BS03 ADP N/A GO:0003677 ... Q8R5F7 40450684
    968881 9f1u:A (3.67) BS04 ALF N/A GO:0003677 ... Q8R5F7 40450684
    968882 9f1u:A (3.67) BS05 ZN N/A GO:0003677 ... Q8R5F7 40450684
    968883 9f1w:A (1.75) BS01 FAD N/A GO:0004016 ... K9TLZ5 N/A
    968884 9f1w:A (1.75) BS02 CA N/A GO:0004016 ... K9TLZ5 N/A
    968885 9f1w:A (1.75) BS03 CA N/A GO:0004016 ... K9TLZ5 N/A
    968886 9f1x:A (1.8) BS01 FMN N/A GO:0004016 ... K9TLZ5 N/A
    968887 9f1x:A (1.8) BS02 CA N/A GO:0004016 ... K9TLZ5 N/A
    968888 9f1x:A (1.8) BS03 CA N/A GO:0004016 ... K9TLZ5 N/A
    968889 9f1y:A (1.95) BS01 FAD N/A GO:0004016 ... K9TLZ5 N/A
    968890 9f1y:A (1.95) BS02 CA N/A GO:0004016 ... K9TLZ5 N/A
    968891 9f1y:A (1.95) BS03 CA N/A GO:0004016 ... K9TLZ5 N/A
    968892 9f1z:A (1.95) BS01 FMN N/A GO:0004016 ... K9TLZ5 39470573
    968893 9f1z:A (1.95) BS02 CA N/A GO:0004016 ... K9TLZ5 39470573
    968894 9f1z:A (1.95) BS03 CA N/A GO:0004016 ... K9TLZ5 39470573
    968895 9f20:A (4.13) BS01 rna N/A GO:0003677 ... Q8R5F7 40450684
    968896 9f20:A (4.13) BS02 rna N/A GO:0003677 ... Q8R5F7 40450684
    968897 9f20:A (4.13) BS03 ADP N/A GO:0003677 ... Q8R5F7 40450684
    968898 9f20:A (4.13) BS04 ALF N/A GO:0003677 ... Q8R5F7 40450684
    968899 9f20:A (4.13) BS05 ZN N/A GO:0003677 ... Q8R5F7 40450684
    968900 9f23:A (1.59) BS01 A1H87 N/A GO:0006091 ... P42212 40542219
    968901 9f23:C (1.59) BS01 A1H87 N/A GO:0006091 ... P42212 40542219
    968902 9f23:C (1.59) BS02 PXN N/A GO:0006091 ... P42212 40542219
    968903 9f26:A (3.501) BS01 ZN N/A GO:0000428 ... Q9V292 39738083
    968904 9f28:A (1.85) BS01 ZN N/A GO:0000428 ... Q9V292 39738083
    968905 9f28:A (1.85) BS02 MG N/A GO:0000428 ... Q9V292 39738083
    968906 9f28:A (1.85) BS03 MG N/A GO:0000428 ... Q9V292 39738083
    968907 9f29:A (2.94) BS01 FE N/A GO:0003676 ... Q9V2F3 39738083
    968908 9f29:B (2.94) BS01 ZN N/A GO:0003677 ... Q9V2F4 39738083
    968909 9f29:B (2.94) BS02 ZN N/A GO:0003677 ... Q9V2F4 39738083
    968910 9f29:B (2.94) BS03 ZN N/A GO:0003677 ... Q9V2F4 39738083
    968911 9f2a:A (2.91) BS01 FE N/A GO:0003676 ... Q9V2F3 39738083
    968912 9f2a:B (2.91) BS01 ZN N/A GO:0003677 ... Q9V2F4 39738083
    968913 9f2a:B (2.91) BS02 ZN N/A GO:0003677 ... Q9V2F4 39738083
    968914 9f2a:B (2.91) BS03 ZN N/A GO:0003677 ... Q9V2F4 39738083
    968915 9f2b:A (3.49) BS01 FUC N/A GO:0001669 ... Q7L1I2 39934119
    968916 9f2d:A (2.886) BS01 FUC N/A N/A W7F7W4 40500441
    968917 9f2d:B (2.886) BS01 FUC N/A N/A P43626 40500441
    968918 9f2d:C (2.886) BS01 FUC N/A N/A W7F7W4 40500441
    968919 9f2d:D (2.886) BS01 FUC N/A N/A P43626 40500441
    968920 9f2d:E (2.886) BS01 FUC N/A N/A W7F7W4 40500441
    968921 9f2d:F (2.886) BS01 FUC N/A N/A P43626 40500441
    968922 9f2d:I (2.886) BS01 FUC N/A N/A W7F7W4 40500441
    968923 9f2d:O (2.886) BS01 FUC N/A N/A W7F7W4 40500441
    968924 9f2e:A (2.015) BS01 A1H9O N/A GO:0004064 ... P00918 N/A
    968925 9f2e:A (2.015) BS02 ZN N/A GO:0004064 ... P00918 N/A
    968926 9f2e:A (2.015) BS03 ZN N/A GO:0004064 ... P00918 N/A
    968927 9f2f:A (1.52) BS01 A1H9O N/A GO:0004064 ... P00918 N/A
    968928 9f2f:A (1.52) BS02 ZN N/A GO:0004064 ... P00918 N/A
    968929 9f2f:A (1.52) BS03 ZN N/A GO:0004064 ... P00918 N/A
    968930 9f2f:A (1.52) BS04 ZN N/A GO:0004064 ... P00918 N/A
    968931 9f2f:B (1.52) BS01 A1H9O N/A GO:0004064 ... P00918 N/A
    968932 9f2f:B (1.52) BS02 ZN N/A GO:0004064 ... P00918 N/A
    968933 9f2f:B (1.52) BS03 ZN N/A GO:0004064 ... P00918 N/A
    968934 9f2f:C (1.52) BS01 A1H9O N/A GO:0004064 ... P00918 N/A
    968935 9f2f:C (1.52) BS02 ZN N/A GO:0004064 ... P00918 N/A
    968936 9f2f:C (1.52) BS03 ZN N/A GO:0004064 ... P00918 N/A
    968937 9f2f:D (1.52) BS01 A1H9O N/A GO:0004064 ... P00918 N/A
    968938 9f2f:D (1.52) BS02 ZN N/A GO:0004064 ... P00918 N/A
    968939 9f2f:D (1.52) BS03 ZN N/A GO:0004064 ... P00918 N/A
    968940 9f2h:A (1.3) BS01 657 N/A GO:0003723 ... P0DTC9 39541975
    968941 9f2i:A (1.45) BS01 A1H88 N/A GO:0003723 ... P0DTC9 39541975
    968942 9f2i:B (1.45) BS01 A1H88 N/A GO:0003723 ... P0DTC9 39541975
    968943 9f2j:A (3.98) BS01 FUC N/A GO:0001669 ... Q7L1I2 39934119
    968944 9f2k:A (2.48) BS01 NAD N/A GO:0004512 ... G0SDP4 39145930
    968945 9f2l:A (3.86) BS01 rna N/A GO:0003677 ... Q8R5F7 40450684
    968946 9f2l:A (3.86) BS02 rna N/A GO:0003677 ... Q8R5F7 40450684
    968947 9f2l:A (3.86) BS03 ZN N/A GO:0003677 ... Q8R5F7 40450684
    968948 9f2l:A (3.86) BS04 ADP N/A GO:0003677 ... Q8R5F7 40450684
    968949 9f2l:A (3.86) BS05 ALF N/A GO:0003677 ... Q8R5F7 40450684
    968950 9f2m:A (1.75) BS01 peptide N/A N/A A0A176W124 N/A
    968951 9f2n:A (1.21) BS01 ZN N/A GO:0004089 ... O43570 40833423
    968952 9f2n:A (1.21) BS02 A1H9A N/A GO:0004089 ... O43570 40833423
    968953 9f2n:B (1.21) BS01 ZN N/A GO:0004089 ... O43570 40833423
    968954 9f2n:B (1.21) BS02 A1H9A N/A GO:0004089 ... O43570 40833423
    968955 9f2o:A (1.12) BS01 ZN N/A GO:0004089 ... O43570 40833423
    968956 9f2o:A (1.12) BS02 A1H89 N/A GO:0004089 ... O43570 40833423
    968957 9f2o:B (1.12) BS01 ZN N/A GO:0004089 ... O43570 40833423
    968958 9f2o:B (1.12) BS02 A1H89 N/A GO:0004089 ... O43570 40833423
    968959 9f2o:C (1.12) BS01 ZN N/A GO:0004089 ... O43570 40833423
    968960 9f2o:C (1.12) BS02 A1H89 N/A GO:0004089 ... O43570 40833423
    968961 9f2o:D (1.12) BS01 ZN N/A GO:0004089 ... O43570 40833423
    968962 9f2o:D (1.12) BS02 A1H89 N/A GO:0004089 ... O43570 40833423
    968963 9f2p:A (1.36) BS01 A1H9C N/A N/A Q9Z2X8 39418396
    968964 9f2q:A (1.2) BS01 A1H9B N/A N/A Q9Z2X8 39418396
    968965 9f2r:A (1.959) BS01 rna N/A GO:0003723 ... H6QM92 N/A
    968966 9f2r:A (1.959) BS02 rna N/A GO:0003723 ... H6QM92 N/A
    968967 9f2r:B (1.959) BS01 rna N/A GO:0000166 ... H6QM91 N/A
    968968 9f2r:B (1.959) BS02 rna N/A GO:0000166 ... H6QM91 N/A
    968969 9f2r:B (1.959) BS03 MG N/A GO:0000166 ... H6QM91 N/A
    968970 9f2r:C (1.959) BS01 rna N/A GO:0003723 ... H6QM90 N/A
    968971 9f2r:C (1.959) BS02 MGT N/A GO:0003723 ... H6QM90 N/A
    968972 9f2t:A (2.2) BS01 C8E N/A GO:0009279 ... Q9I2J4 40035455
    968973 9f2t:A (2.2) BS02 C8E N/A GO:0009279 ... Q9I2J4 40035455
    968974 9f2t:A (2.2) BS03 C8E N/A GO:0009279 ... Q9I2J4 40035455
    968975 9f2t:B (2.2) BS01 C8E N/A GO:0009279 ... Q9I2J4 40035455
    968976 9f2t:B (2.2) BS02 C8E N/A GO:0009279 ... Q9I2J4 40035455
    968977 9f2t:B (2.2) BS03 C8E N/A GO:0009279 ... Q9I2J4 40035455
    968978 9f2v:A (2.191) BS01 A1H9E N/A GO:0008233 ... P0DTD1 39817813
    968979 9f2v:B (2.191) BS01 A1H9E N/A GO:0008233 ... P0DTD1 39817813
    968980 9f2w:A (4.21) BS01 rna N/A GO:0003677 ... Q8R5F7 40450684
    968981 9f2w:A (4.21) BS02 rna N/A GO:0003677 ... Q8R5F7 40450684
    968982 9f2w:A (4.21) BS03 ZN N/A GO:0003677 ... Q8R5F7 40450684
    968983 9f2w:A (4.21) BS04 ATP N/A GO:0003677 ... Q8R5F7 40450684
    968984 9f2x:A (1.9) BS01 A1H9D N/A GO:0008233 ... P0DTD1 39817813
    968985 9f2x:B (1.9) BS01 A1H9D N/A GO:0008233 ... P0DTD1 39817813
    968986 9f30:A (1.12) BS01 ZN N/A GO:0004089 ... O43570 40833423
    968987 9f30:A (1.12) BS02 A1H92 N/A GO:0004089 ... O43570 40833423
    968988 9f30:B (1.12) BS01 ZN N/A GO:0004089 ... O43570 40833423
    968989 9f30:B (1.12) BS02 A1H92 N/A GO:0004089 ... O43570 40833423
    968990 9f30:C (1.12) BS01 ZN N/A GO:0004089 ... O43570 40833423
    968991 9f30:C (1.12) BS02 A1H92 N/A GO:0004089 ... O43570 40833423
    968992 9f30:D (1.12) BS01 ZN N/A GO:0004089 ... O43570 40833423
    968993 9f30:D (1.12) BS02 A1H92 N/A GO:0004089 ... O43570 40833423
    968994 9f31:A (2.0) BS01 A1H9M N/A GO:0004672 ... Q14680 39716901
    968995 9f32:A (2.1) BS01 A1H9M N/A GO:0004672 ... O75385 39716901
    968996 9f33:R (3.05) BS01 A1H9N N/A GO:0001591 ... P35462
    P42212
    39237617
    968997 9f34:R (3.09) BS01 A1H9N N/A GO:0001591 ... P35462
    P42212
    39237617
    968998 9f35:A (2.3) BS01 peptide N/A GO:0001836 ... P31947 39850253
    968999 9f37:A (1.905) BS01 rna N/A GO:0003723 ... H6QM92 N/A
    969000 9f37:A (1.905) BS02 rna N/A GO:0003723 ... H6QM92 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).