SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    969001 9f37:B (1.905) BS01 rna N/A GO:0000166 ... H6QM91 N/A
    969002 9f37:B (1.905) BS02 rna N/A GO:0000166 ... H6QM91 N/A
    969003 9f37:B (1.905) BS03 CTP N/A GO:0000166 ... H6QM91 N/A
    969004 9f37:B (1.905) BS04 GTP N/A GO:0000166 ... H6QM91 N/A
    969005 9f37:B (1.905) BS05 MG N/A GO:0000166 ... H6QM91 N/A
    969006 9f37:B (1.905) BS06 MG N/A GO:0000166 ... H6QM91 N/A
    969007 9f37:C (1.905) BS01 rna N/A GO:0003723 ... H6QM90 N/A
    969008 9f37:C (1.905) BS02 MGT N/A GO:0003723 ... H6QM90 N/A
    969009 9f38:A (2.85) BS01 dna N/A N/A Q8RLN4 40055548
    969010 9f38:A (2.85) BS02 dna N/A N/A Q8RLN4 40055548
    969011 9f38:A (2.85) BS03 CA N/A N/A Q8RLN4 40055548
    969012 9f38:A (2.85) BS04 CA N/A N/A Q8RLN4 40055548
    969013 9f38:A (2.85) BS05 CA N/A N/A Q8RLN4 40055548
    969014 9f38:Z (2.85) BS01 dna N/A N/A Q8RLN4 40055548
    969015 9f38:Z (2.85) BS02 dna N/A N/A Q8RLN4 40055548
    969016 9f38:Z (2.85) BS03 CA N/A N/A Q8RLN4 40055548
    969017 9f38:Z (2.85) BS04 CA N/A N/A Q8RLN4 40055548
    969018 9f38:Z (2.85) BS05 CA N/A N/A Q8RLN4 40055548
    969019 9f39:A (2.45) BS01 A1H9Y N/A GO:0008233 ... P0DTD1 39817813
    969020 9f3a:A (2.15) BS01 A1H9Z N/A GO:0008233 ... P0DTD1 39817813
    969021 9f3a:B (2.15) BS01 A1H9Z N/A GO:0008233 ... P0DTD1 39817813
    969022 9f3b:A (3.6) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969023 9f3b:B (3.6) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969024 9f3b:C (3.6) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969025 9f3b:D (3.6) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969026 9f3b:E (3.6) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969027 9f3b:F (3.6) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969028 9f3b:G (3.6) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969029 9f3b:I (3.6) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969030 9f3b:K (3.6) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969031 9f3b:N (3.6) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969032 9f3b:P (3.6) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969033 9f3b:R (3.6) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969034 9f3f:2 (2.4) BS01 7MG N/A GO:0000339 ... Q585L4 39814716
    969035 9f3g:A (1.21) BS01 ZN N/A GO:0004089 ... O43570 40833423
    969036 9f3g:A (1.21) BS02 A1H91 N/A GO:0004089 ... O43570 40833423
    969037 9f3g:B (1.21) BS01 ZN N/A GO:0004089 ... O43570 40833423
    969038 9f3g:B (1.21) BS02 A1H91 N/A GO:0004089 ... O43570 40833423
    969039 9f3g:C (1.21) BS01 ZN N/A GO:0004089 ... O43570 40833423
    969040 9f3g:C (1.21) BS02 A1H91 N/A GO:0004089 ... O43570 40833423
    969041 9f3g:D (1.21) BS01 ZN N/A GO:0004089 ... O43570 40833423
    969042 9f3g:D (1.21) BS02 A1H91 N/A GO:0004089 ... O43570 40833423
    969043 9f3h:A (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969044 9f3h:A (4.3) BS02 MG N/A GO:0005200 ... P68363 40064882
    969045 9f3h:B (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969046 9f3h:C (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969047 9f3h:D (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969048 9f3h:E (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969049 9f3h:E (4.3) BS02 MG N/A GO:0005200 ... P68363 40064882
    969050 9f3h:F (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969051 9f3h:G (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969052 9f3h:I (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969053 9f3h:I (4.3) BS02 MG N/A GO:0005200 ... P68363 40064882
    969054 9f3h:K (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969055 9f3h:N (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969056 9f3h:P (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969057 9f3h:R (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969058 9f3i:A (2.65) BS01 BGC N/A GO:0001678 ... Q6CUZ3 N/A
    969059 9f3i:B (2.65) BS01 BGC N/A GO:0001678 ... Q6CUZ3 N/A
    969060 9f3i:C (2.65) BS01 BGC N/A GO:0001678 ... Q6CUZ3 N/A
    969061 9f3i:D (2.65) BS01 BGC N/A GO:0001678 ... Q6CUZ3 N/A
    969062 9f3j:A (2.35) BS01 MAN N/A GO:0001678 ... Q6CUZ3 N/A
    969063 9f3j:B (2.35) BS01 MAN N/A GO:0001678 ... Q6CUZ3 N/A
    969064 9f3k:A (2.85) BS01 BGC N/A GO:0001678 ... Q6CUZ3 N/A
    969065 9f3k:B (2.85) BS01 BGC N/A GO:0001678 ... Q6CUZ3 N/A
    969066 9f3l:A (2.48) BS01 MAN N/A GO:0001678 ... Q6CUZ3 N/A
    969067 9f3l:B (2.48) BS01 MAN N/A GO:0001678 ... Q6CUZ3 N/A
    969068 9f3l:C (2.48) BS01 MAN N/A GO:0001678 ... Q6CUZ3 N/A
    969069 9f3l:D (2.48) BS01 MAN N/A GO:0001678 ... Q6CUZ3 N/A
    969070 9f3m:A (2.6) BS01 FRU N/A GO:0001678 ... Q6CUZ3 N/A
    969071 9f3m:B (2.6) BS01 FRU N/A GO:0001678 ... Q6CUZ3 N/A
    969072 9f3p:A (3.97) BS01 rna N/A GO:0003677 ... Q8R5F7 40450684
    969073 9f3p:A (3.97) BS02 rna N/A GO:0003677 ... Q8R5F7 40450684
    969074 9f3p:A (3.97) BS03 ZN N/A GO:0003677 ... Q8R5F7 40450684
    969075 9f3q:A (2.75) BS01 YM2 N/A GO:0005198 ... P03300 39827284
    969076 9f3q:C (2.75) BS01 GSH N/A GO:0005198 ... P03300 39827284
    969077 9f3r:A (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969078 9f3r:B (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969079 9f3r:C (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969080 9f3r:D (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969081 9f3r:E (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969082 9f3r:F (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969083 9f3r:G (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969084 9f3r:I (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969085 9f3r:K (4.3) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969086 9f3r:N (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969087 9f3r:P (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969088 9f3r:R (4.3) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969089 9f3s:A (4.2) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969090 9f3s:B (4.2) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969091 9f3s:C (4.2) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969092 9f3s:D (4.2) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969093 9f3s:E (4.2) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969094 9f3s:F (4.2) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969095 9f3s:G (4.2) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969096 9f3s:I (4.2) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969097 9f3s:K (4.2) BS01 GTP N/A GO:0005200 ... P68363 40064882
    969098 9f3s:N (4.2) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969099 9f3s:P (4.2) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969100 9f3s:R (4.2) BS01 GTP N/A GO:0000226 ... Q13509 40064882
    969101 9f3t:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969102 9f3t:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969103 9f3t:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969104 9f3t:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969105 9f3t:B (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969106 9f3t:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969107 9f3t:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969108 9f3t:C (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969109 9f3t:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969110 9f3t:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969111 9f3t:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969112 9f3t:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969113 9f3t:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969114 9f3t:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969115 9f3u:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969116 9f3u:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969117 9f3u:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969118 9f3u:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969119 9f3u:B (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969120 9f3u:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969121 9f3u:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969122 9f3u:C (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969123 9f3u:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969124 9f3u:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969125 9f3u:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969126 9f3u:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969127 9f3u:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969128 9f3u:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969129 9f3v:A (1.943) BS01 A1H90 N/A GO:0004672 ... O43353 39444201
    969130 9f3v:B (1.943) BS01 A1H90 N/A GO:0004672 ... O43353 39444201
    969131 9f3w:A (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969132 9f3w:B (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969133 9f3w:C (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969134 9f3w:D (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969135 9f3w:E (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969136 9f3w:F (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969137 9f3w:G (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969138 9f3w:H (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969139 9f3x:A (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969140 9f3x:B (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969141 9f3x:C (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969142 9f3x:D (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969143 9f3x:E (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969144 9f3x:F (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969145 9f3x:G (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969146 9f3x:H (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969147 9f3y:A (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969148 9f3y:B (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969149 9f3y:C (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969150 9f3y:D (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969151 9f3y:E (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969152 9f3y:F (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969153 9f3y:G (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969154 9f3y:H (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    969155 9f3z:A (3.5) BS01 CU N/A GO:0005507 ... Q04HQ8 39126090
    969156 9f3z:A (3.5) BS02 CU N/A GO:0005507 ... Q04HQ8 39126090
    969157 9f3z:A (3.5) BS03 CU N/A GO:0005507 ... Q04HQ8 39126090
    969158 9f3z:A (3.5) BS04 CU N/A GO:0005507 ... Q04HQ8 39126090
    969159 9f3z:B (3.5) BS01 CU N/A GO:0005507 ... Q04HQ8 39126090
    969160 9f3z:B (3.5) BS02 CU N/A GO:0005507 ... Q04HQ8 39126090
    969161 9f3z:B (3.5) BS03 CU N/A GO:0005507 ... Q04HQ8 39126090
    969162 9f3z:B (3.5) BS04 CU N/A GO:0005507 ... Q04HQ8 39126090
    969163 9f40:A (2.44) BS01 MAN ? N/A Q12200 39455279
    969164 9f40:A (2.44) BS02 ERG ? N/A Q12200 39455279
    969165 9f40:A (2.44) BS03 ZN ? N/A Q12200 39455279
    969166 9f40:A (2.44) BS04 ZN ? N/A Q12200 39455279
    969167 9f40:A (2.44) BS05 ZN ? N/A Q12200 39455279
    969168 9f40:B (2.44) BS01 ZN ? N/A Q12200 39455279
    969169 9f40:B (2.44) BS02 ERG ? N/A Q12200 39455279
    969170 9f40:B (2.44) BS03 ZN ? N/A Q12200 39455279
    969171 9f40:B (2.44) BS04 ZN ? N/A Q12200 39455279
    969172 9f40:B (2.44) BS05 ZN ? N/A Q12200 39455279
    969173 9f40:B (2.44) BS06 ZN ? N/A Q12200 39455279
    969174 9f40:C (2.44) BS01 ERG ? N/A Q12200 39455279
    969175 9f40:C (2.44) BS02 ZN ? N/A Q12200 39455279
    969176 9f40:C (2.44) BS03 ZN ? N/A Q12200 39455279
    969177 9f40:C (2.44) BS04 ZN ? N/A Q12200 39455279
    969178 9f40:C (2.44) BS05 ZN ? N/A Q12200 39455279
    969179 9f40:C (2.44) BS06 ZN ? N/A Q12200 39455279
    969180 9f40:D (2.44) BS01 MAN ? N/A Q12200 39455279
    969181 9f40:D (2.44) BS02 ZN ? N/A Q12200 39455279
    969182 9f40:D (2.44) BS03 ERG ? N/A Q12200 39455279
    969183 9f40:D (2.44) BS04 ZN ? N/A Q12200 39455279
    969184 9f40:D (2.44) BS05 ZN ? N/A Q12200 39455279
    969185 9f41:A (2.64) BS01 CLR ? N/A Q12200 39455279
    969186 9f41:A (2.64) BS02 ZN ? N/A Q12200 39455279
    969187 9f41:A (2.64) BS03 ZN ? N/A Q12200 39455279
    969188 9f41:B (2.64) BS01 CLR ? N/A Q12200 39455279
    969189 9f41:B (2.64) BS02 ZN ? N/A Q12200 39455279
    969190 9f41:B (2.64) BS03 ZN ? N/A Q12200 39455279
    969191 9f41:B (2.64) BS04 ZN ? N/A Q12200 39455279
    969192 9f41:B (2.64) BS05 ZN ? N/A Q12200 39455279
    969193 9f41:B (2.64) BS06 ZN ? N/A Q12200 39455279
    969194 9f41:C (2.64) BS01 MAN ? N/A Q12200 39455279
    969195 9f41:C (2.64) BS02 CLR ? N/A Q12200 39455279
    969196 9f41:C (2.64) BS03 ZN ? N/A Q12200 39455279
    969197 9f41:C (2.64) BS04 ZN ? N/A Q12200 39455279
    969198 9f41:C (2.64) BS05 ZN ? N/A Q12200 39455279
    969199 9f41:C (2.64) BS06 ZN ? N/A Q12200 39455279
    969200 9f41:C (2.64) BS07 ZN ? N/A Q12200 39455279

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).