SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    969201 9f41:D (2.64) BS01 MAN ? N/A Q12200 39455279
    969202 9f41:D (2.64) BS02 ZN ? N/A Q12200 39455279
    969203 9f41:D (2.64) BS03 CLR ? N/A Q12200 39455279
    969204 9f41:D (2.64) BS04 ZN ? N/A Q12200 39455279
    969205 9f41:D (2.64) BS05 ZN ? N/A Q12200 39455279
    969206 9f42:E (3.27) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    969207 9f43:E (3.49) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    969208 9f44:A (3.68) BS01 IHP N/A GO:0000139 ... P42345 39141345
    969209 9f44:B (3.68) BS01 IHP N/A GO:0000139 ... P42345 39141345
    969210 9f44:E (3.68) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    969211 9f44:F (3.68) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    969212 9f45:A (3.74) BS01 IHP N/A GO:0000139 ... P42345 39141345
    969213 9f45:B (3.74) BS01 IHP N/A GO:0000139 ... P42345 39141345
    969214 9f45:E (3.74) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    969215 9f45:F (3.74) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    969216 9f46:A (2.45) BS01 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969217 9f46:A (2.45) BS02 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969218 9f46:A (2.45) BS03 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969219 9f46:A (2.45) BS04 ZN N/A GO:0005506 ... A0A1I9RYV3 39805018
    969220 9f46:B (2.45) BS01 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969221 9f46:B (2.45) BS02 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969222 9f46:B (2.45) BS03 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969223 9f46:B (2.45) BS04 ZN N/A GO:0005506 ... A0A1I9RYV3 39805018
    969224 9f47:A (2.9) BS01 402 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969225 9f47:A (2.9) BS02 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969226 9f47:A (2.9) BS03 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969227 9f47:A (2.9) BS04 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969228 9f47:A (2.9) BS05 ZN N/A GO:0005506 ... A0A1I9RYV3 39805018
    969229 9f47:B (2.9) BS01 402 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969230 9f47:B (2.9) BS02 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969231 9f47:B (2.9) BS03 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969232 9f47:B (2.9) BS04 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    969233 9f47:B (2.9) BS05 ZN N/A GO:0005506 ... A0A1I9RYV3 39805018
    969234 9f49:AAA (1.621) BS01 G3P N/A GO:0006629 ... A0A410TAW0 N/A
    969235 9f49:AAA (1.621) BS02 CA N/A GO:0006629 ... A0A410TAW0 N/A
    969236 9f4d:A (1.5) BS01 JH1 ? GO:0003676 ... P09651 39984046
    969237 9f4e:A () BS01 VZM ? N/A N/A N/A
    969238 9f4f:A () BS01 A1H9T ? N/A N/A N/A
    969239 9f4g:A (1.4) BS01 SZE ? GO:0003676 ... P09651 39984046
    969240 9f4h:A (1.4) BS01 NUY ? GO:0003676 ... P09651 39984046
    969241 9f4h:A (1.4) BS02 NUY ? GO:0003676 ... P09651 39984046
    969242 9f4j:A (1.4) BS01 NWP ? GO:0003676 ... P09651 39984046
    969243 9f4k:A (1.8) BS01 A1H9R ? GO:0003676 ... P09651 39984046
    969244 9f4l:A (1.4) BS01 WGP ? GO:0003676 ... P09651 39984046
    969245 9f4m:A () BS01 A1H97 ? N/A N/A N/A
    969246 9f4n:A (1.4) BS01 O3J ? GO:0003676 ... P09651 39984046
    969247 9f4o:A (1.4) BS01 A1H95 ? GO:0003676 ... P09651 39984046
    969248 9f4p:A (1.4) BS01 Q49 ? GO:0003676 ... P09651 39984046
    969249 9f4q:A (1.4) BS01 A1H9S ? GO:0003676 ... P09651 39984046
    969250 9f4r:A (1.59) BS01 K3J ? GO:0003676 ... P09651 39984046
    969251 9f4s:A (1.4) BS01 JGA ? GO:0003676 ... P09651 39984046
    969252 9f4t:A (1.42) BS01 WZY ? GO:0003676 ... P09651 39984046
    969253 9f4u:A (1.4) BS01 LXA ? GO:0003676 ... P09651 39984046
    969254 9f4v:A (1.4) BS01 UQJ ? GO:0003676 ... P09651 39984046
    969255 9f4w:A (1.6) BS01 O0M ? GO:0003676 ... P09651 39984046
    969256 9f4x:A (1.6) BS01 HWH ? GO:0003676 ... P09651 39984046
    969257 9f4y:A (1.4) BS01 W0S ? GO:0003676 ... P09651 39984046
    969258 9f4z:A (1.6) BS01 9KS ? GO:0003676 ... P09651 39984046
    969259 9f50:A (1.5) BS01 K2G ? GO:0003676 ... P09651 39984046
    969260 9f51:A (1.5) BS01 A1H9V ? GO:0003676 ... P09651 39984046
    969261 9f52:A (1.5) BS01 A1H9W ? GO:0003676 ... P09651 39984046
    969262 9f53:A (1.8) BS01 K3A ? GO:0003676 ... P09651 39984046
    969263 9f54:A (1.7) BS01 K3Y ? GO:0003676 ... P09651 39984046
    969264 9f55:A (1.55) BS01 A1H9U ? GO:0003676 ... P09651 39984046
    969265 9f55:A (1.55) BS02 A1H9U ? GO:0003676 ... P09651 39984046
    969266 9f56:A (2.1) BS01 CA N/A GO:0004222 ... P00800 39291627
    969267 9f56:A (2.1) BS02 CA N/A GO:0004222 ... P00800 39291627
    969268 9f56:A (2.1) BS03 CA N/A GO:0004222 ... P00800 39291627
    969269 9f56:A (2.1) BS04 ZN N/A GO:0004222 ... P00800 39291627
    969270 9f58:0 (3.1) BS01 rna N/A GO:0002181 ... P0CX25 40198700
    969271 9f58:0 (3.1) BS02 ZN N/A GO:0002181 ... P0CX25 40198700
    969272 9f58:3 (3.1) BS01 rna N/A GO:0002181 ... P10664 40198700
    969273 9f58:3 (3.1) BS02 rna N/A GO:0002181 ... P10664 40198700
    969274 9f58:A (3.1) BS01 rna N/A GO:0000049 ... P15442 40198700
    969275 9f58:E (3.1) BS01 rna N/A GO:0000049 ... P15442 40198700
    969276 9f58:H (3.1) BS01 rna N/A GO:0000049 ... P15442 40198700
    969277 9f58:J (3.1) BS01 rna N/A GO:0002181 ... P05743 40198700
    969278 9f58:J (3.1) BS02 rna N/A GO:0002181 ... P05743 40198700
    969279 9f58:K (3.1) BS01 rna N/A GO:0002181 ... P0C2H6 40198700
    969280 9f58:L (3.1) BS01 rna N/A GO:0002181 ... P02406 40198700
    969281 9f58:M (3.1) BS01 rna N/A GO:0002181 ... P05747 40198700
    969282 9f58:N (3.1) BS01 rna N/A GO:0002181 ... P14120 40198700
    969283 9f58:O (3.1) BS01 rna N/A GO:0002181 ... P0C2H8 40198700
    969284 9f58:Q (3.1) BS01 rna N/A GO:0002181 ... P38061 40198700
    969285 9f58:R (3.1) BS01 rna N/A GO:0000027 ... P05744 40198700
    969286 9f58:S (3.1) BS01 rna N/A GO:0002181 ... P87262 40198700
    969287 9f58:S (3.1) BS02 ZN N/A GO:0002181 ... P87262 40198700
    969288 9f58:T (3.1) BS01 rna N/A GO:0000463 ... P0CX84 40198700
    969289 9f58:T (3.1) BS02 rna N/A GO:0000463 ... P0CX84 40198700
    969290 9f58:U (3.1) BS01 rna N/A GO:0000470 ... P05745 40198700
    969291 9f58:V (3.1) BS01 rna N/A GO:0000448 ... P49166 40198700
    969292 9f58:V (3.1) BS02 rna N/A GO:0000448 ... P49166 40198700
    969293 9f58:V (3.1) BS03 ZN N/A GO:0000448 ... P49166 40198700
    969294 9f58:W (3.1) BS01 rna N/A GO:0002181 ... P49167 40198700
    969295 9f58:X (3.1) BS01 rna N/A GO:0002181 ... P04650 40198700
    969296 9f58:X (3.1) BS02 rna N/A GO:0002181 ... P04650 40198700
    969297 9f58:Y (3.1) BS01 rna N/A GO:0000027 ... P0CH08 40198700
    969298 9f58:Y (3.1) BS02 ZN N/A GO:0000027 ... P0CH08 40198700
    969299 9f58:Z (3.1) BS01 rna N/A GO:0002181 ... P0CX27 40198700
    969300 9f58:Z (3.1) BS02 ZN N/A GO:0002181 ... P0CX27 40198700
    969301 9f58:c (3.1) BS01 rna N/A GO:0002181 ... P0CX45 40198700
    969302 9f58:d (3.1) BS01 rna N/A GO:0000027 ... P14126 40198700
    969303 9f58:e (3.1) BS01 rna N/A GO:0000027 ... P26321 40198700
    969304 9f58:e (3.1) BS02 rna N/A GO:0000027 ... P26321 40198700
    969305 9f58:f (3.1) BS01 rna N/A GO:0000027 ... Q02326 40198700
    969306 9f58:g (3.1) BS01 rna N/A GO:0000463 ... P05737 40198700
    969307 9f58:g (3.1) BS02 rna N/A GO:0000463 ... P05737 40198700
    969308 9f58:h (3.1) BS01 rna N/A GO:0000470 ... P17076 40198700
    969309 9f58:h (3.1) BS02 rna N/A GO:0000470 ... P17076 40198700
    969310 9f58:i (3.1) BS01 rna N/A GO:0002181 ... P05738 40198700
    969311 9f58:j (3.1) BS01 rna N/A GO:0000027 ... P41805 40198700
    969312 9f58:j (3.1) BS02 rna N/A GO:0000027 ... P41805 40198700
    969313 9f58:k (3.1) BS01 rna N/A GO:0000027 ... P0C0W9 40198700
    969314 9f58:k (3.1) BS02 rna N/A GO:0000027 ... P0C0W9 40198700
    969315 9f58:m (3.1) BS01 rna N/A GO:0002181 ... Q12690 40198700
    969316 9f58:n (3.1) BS01 rna N/A GO:0000027 ... P36105 40198700
    969317 9f58:o (3.1) BS01 rna N/A GO:0000470 ... P05748 40198700
    969318 9f58:o (3.1) BS02 rna N/A GO:0000470 ... P05748 40198700
    969319 9f58:p (3.1) BS01 rna N/A GO:0000470 ... P26784 40198700
    969320 9f58:q (3.1) BS01 rna N/A GO:0000448 ... P05740 40198700
    969321 9f58:q (3.1) BS02 rna N/A GO:0000448 ... P05740 40198700
    969322 9f58:r (3.1) BS01 rna N/A GO:0002181 ... P0CX49 40198700
    969323 9f58:s (3.1) BS01 rna N/A GO:0002181 ... P0CX82 40198700
    969324 9f58:t (3.1) BS01 rna N/A GO:0002181 ... P0CX23 40198700
    969325 9f58:t (3.1) BS02 rna N/A GO:0002181 ... P0CX23 40198700
    969326 9f58:u (3.1) BS01 rna N/A GO:0002181 ... Q02753 40198700
    969327 9f58:u (3.1) BS02 rna N/A GO:0002181 ... Q02753 40198700
    969328 9f58:v (3.1) BS01 rna N/A GO:0002181 ... P05749 40198700
    969329 9f58:w (3.1) BS01 rna N/A GO:0002181 ... P0CX41 40198700
    969330 9f58:y (3.1) BS01 rna N/A GO:0002181 ... P04449 40198700
    969331 9f58:z (3.1) BS01 rna N/A GO:0000027 ... P04456 40198700
    969332 9f58:z (3.1) BS02 rna N/A GO:0000027 ... P04456 40198700
    969333 9f5b:A (1.8) BS01 ZN N/A N/A P61968
    Q86U70
    39291627
    969334 9f5b:A (1.8) BS02 ZN N/A N/A P61968
    Q86U70
    39291627
    969335 9f5b:A (1.8) BS03 ZN N/A N/A P61968
    Q86U70
    39291627
    969336 9f5b:A (1.8) BS04 ZN N/A N/A P61968
    Q86U70
    39291627
    969337 9f5c:A (1.45) BS01 LJA ? GO:0003676 ... P09651 39984046
    969338 9f5d:A (1.6) BS01 A1H9X ? GO:0003676 ... P09651 39984046
    969339 9f5e:A (1.45) BS01 JFP ? GO:0003676 ... P09651 39984046
    969340 9f5f:A (1.4) BS01 W0J ? GO:0003676 ... P09651 39984046
    969341 9f5g:A (1.8) BS01 Z9I ? GO:0003676 ... P09651 39984046
    969342 9f5h:A (1.97) BS01 UDP N/A GO:0030144 ... Q09328 39287665
    969343 9f5h:A (1.97) BS02 MAN N/A GO:0030144 ... Q09328 39287665
    969344 9f5h:B (1.97) BS01 UDP N/A GO:0030144 ... Q09328 39287665
    969345 9f5i:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969346 9f5i:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969347 9f5i:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969348 9f5i:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969349 9f5i:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969350 9f5i:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969351 9f5i:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969352 9f5i:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969353 9f5i:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969354 9f5i:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969355 9f5i:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969356 9f5i:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969357 9f5k:A (1.7) BS01 ONQ ? GO:0003676 ... P09651 39984046
    969358 9f5q:A (1.95) BS01 ACO N/A GO:0016747 ... Q38AU6 39579771
    969359 9f5q:B (1.95) BS01 ACO N/A GO:0016747 ... Q38AU6 39579771
    969360 9f5r:A (1.694) BS01 HEM N/A GO:0004833 ... P14902 N/A
    969361 9f5r:A (1.694) BS02 A1H93 N/A GO:0004833 ... P14902 N/A
    969362 9f5r:B (1.694) BS01 HEM N/A GO:0004833 ... P14902 N/A
    969363 9f5r:B (1.694) BS02 A1H93 N/A GO:0004833 ... P14902 N/A
    969364 9f5u:A (1.15) BS01 COH N/A GO:0004392 ... P71119 39352411
    969365 9f5w:G (7.5) BS01 peptide N/A GO:0000070 ... Q86XI2 40614722
    969366 9f5x:1A (2.82) BS01 UQ5 N/A GO:0005743 ... P23662 40112058
    969367 9f5x:1A (2.82) BS02 UQ5 N/A GO:0005743 ... P23662 40112058
    969368 9f5x:1A (2.82) BS03 HEM N/A GO:0005743 ... P23662 40112058
    969369 9f5x:1A (2.82) BS04 HEM N/A GO:0005743 ... P23662 40112058
    969370 9f5x:1B (2.82) BS01 UQ5 N/A GO:0005743 ... P23662 40112058
    969371 9f5x:1B (2.82) BS02 UQ5 N/A GO:0005743 ... P23662 40112058
    969372 9f5x:1B (2.82) BS03 HEM N/A GO:0005743 ... P23662 40112058
    969373 9f5x:1B (2.82) BS04 HEM N/A GO:0005743 ... P23662 40112058
    969374 9f5x:1E (2.82) BS01 HEC N/A GO:0005743 ... Q9FQ96 40112058
    969375 9f5x:1F (2.82) BS01 HEC N/A GO:0005743 ... Q9FQ96 40112058
    969376 9f5x:1M (2.82) BS01 ZN N/A GO:0004222 ... A8J5P7 40112058
    969377 9f5x:2A (2.82) BS01 HEA N/A GO:0004129 ... P08681 40112058
    969378 9f5x:2A (2.82) BS02 HEA N/A GO:0004129 ... P08681 40112058
    969379 9f5x:2A (2.82) BS03 CU N/A GO:0004129 ... P08681 40112058
    969380 9f5x:2A (2.82) BS04 MG N/A GO:0004129 ... P08681 40112058
    969381 9f5x:2C (2.82) BS01 CUA N/A GO:0004129 ... Q9AU02 40112058
    969382 9f5x:3A (2.82) BS01 HEA N/A GO:0004129 ... P08681 40112058
    969383 9f5x:3A (2.82) BS02 HEA N/A GO:0004129 ... P08681 40112058
    969384 9f5x:3A (2.82) BS03 CU N/A GO:0004129 ... P08681 40112058
    969385 9f5x:3A (2.82) BS04 MG N/A GO:0004129 ... P08681 40112058
    969386 9f5x:3C (2.82) BS01 CUA N/A GO:0004129 ... Q9AU02 40112058
    969387 9f5x:A (2.82) BS01 FES N/A GO:0016491 ... Q6V9B3 40112058
    969388 9f5x:B (2.82) BS01 FMN N/A GO:0005739 ... A8ICJ1 40112058
    969389 9f5x:B (2.82) BS02 SF4 N/A GO:0005739 ... A8ICJ1 40112058
    969390 9f5x:C (2.82) BS01 FES N/A GO:0008137 ... A8IVJ7 40112058
    969391 9f5x:C (2.82) BS02 SF4 N/A GO:0008137 ... A8IVJ7 40112058
    969392 9f5x:C (2.82) BS03 SF4 N/A GO:0008137 ... A8IVJ7 40112058
    969393 9f5x:E (2.82) BS01 SF4 N/A GO:0005743 ... Q6V9A8 40112058
    969394 9f5x:F (2.82) BS01 SF4 N/A GO:0005739 ... Q6V9B0 40112058
    969395 9f5x:F (2.82) BS02 UQ5 N/A GO:0005739 ... Q6V9B0 40112058
    969396 9f5x:G (2.82) BS01 SF4 N/A GO:0003954 ... Q6V9B1 40112058
    969397 9f5x:G (2.82) BS02 SF4 N/A GO:0003954 ... Q6V9B1 40112058
    969398 9f5x:J (2.82) BS01 8Q1 N/A GO:0000035 ... Q6UKY4 40112058
    969399 9f5x:K (2.82) BS01 8Q1 N/A GO:0005743 ... Q6UKY9 40112058
    969400 9f5x:P (2.82) BS01 NDP N/A GO:0005739 ... Q6V506 40112058

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).