SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    969601 9f73:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969602 9f73:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969603 9f73:C (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969604 9f73:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969605 9f73:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969606 9f73:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969607 9f73:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969608 9f73:E (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969609 9f73:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969610 9f73:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969611 9f74:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969612 9f74:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969613 9f74:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969614 9f74:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969615 9f74:B (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969616 9f74:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969617 9f74:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969618 9f74:C (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969619 9f74:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969620 9f74:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969621 9f74:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969622 9f74:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969623 9f74:E (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969624 9f74:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969625 9f74:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969626 9f75:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969627 9f75:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969628 9f75:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969629 9f75:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969630 9f75:B (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969631 9f75:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969632 9f75:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969633 9f75:C (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969634 9f75:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969635 9f75:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969636 9f75:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969637 9f75:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969638 9f75:E (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969639 9f75:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969640 9f75:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969641 9f77:A (1.42) BS01 A1H99 N/A N/A Q9UIF9 N/A
    969642 9f77:B (1.42) BS01 A1H99 N/A N/A Q9UIF9 N/A
    969643 9f77:C (1.42) BS01 A1H99 N/A N/A Q9UIF9 N/A
    969644 9f78:A (1.7) BS01 A1H98 N/A N/A Q9UIF9 N/A
    969645 9f78:B (1.7) BS01 A1H98 N/A N/A Q9UIF9 N/A
    969646 9f7a:A (1.9) BS01 ZN N/A GO:0003723 ... P0DTC9 39653699
    969647 9f7c:A (2.0) BS01 ZN N/A GO:0003723 ... P0DTC9 39653699
    969648 9f7c:A (2.0) BS02 ZN N/A GO:0003723 ... P0DTC9 39653699
    969649 9f7d:A (2.0) BS01 dna N/A GO:0003676 ... N/A 39778863
    969650 9f7f:A (1.55) BS01 WNM ? GO:0003676 ... P09651 39984046
    969651 9f7g:A (1.55) BS01 dna N/A GO:0003676 ... A0ACD6BAA6 39778863
    969652 9f7h:A (1.43) BS01 JFM ? GO:0003676 ... P09651 39984046
    969653 9f7k:A (1.8) BS01 GSH N/A GO:0003824 ... Q7KK90 39062472
    969654 9f7k:A (1.8) BS02 GS8 N/A GO:0003824 ... Q7KK90 39062472
    969655 9f7k:B (1.8) BS01 GSH N/A GO:0003824 ... Q7KK90 39062472
    969656 9f7k:B (1.8) BS02 GS8 N/A GO:0003824 ... Q7KK90 39062472
    969657 9f7l:A (2.2) BS01 dna N/A GO:0003676 ... A0A0R4J6U7 39778863
    969658 9f7l:A (2.2) BS02 dna N/A GO:0003676 ... A0A0R4J6U7 39778863
    969659 9f7l:C (2.2) BS01 dna N/A GO:0003676 ... A0A0R4J6U7 39778863
    969660 9f7l:E (2.2) BS01 dna N/A GO:0003676 ... A0A0R4J6U7 39778863
    969661 9f7l:G (2.2) BS01 dna N/A GO:0003676 ... A0A0R4J6U7 39778863
    969662 9f7l:I (2.2) BS01 dna N/A GO:0003676 ... A0A0R4J6U7 39778863
    969663 9f7l:I (2.2) BS02 dna N/A GO:0003676 ... A0A0R4J6U7 39778863
    969664 9f7l:K (2.2) BS01 dna N/A GO:0003676 ... A0A0R4J6U7 39778863
    969665 9f7l:M (2.2) BS01 dna N/A GO:0003676 ... A0A0R4J6U7 39778863
    969666 9f7l:O (2.2) BS01 dna N/A GO:0003676 ... A0A0R4J6U7 39778863
    969667 9f7m:A (1.65) BS01 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969668 9f7m:A (1.65) BS02 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969669 9f7m:B (1.65) BS01 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969670 9f7m:B (1.65) BS02 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969671 9f7m:C (1.65) BS01 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969672 9f7m:C (1.65) BS02 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969673 9f7m:D (1.65) BS01 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969674 9f7m:D (1.65) BS02 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969675 9f7m:E (1.65) BS01 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969676 9f7m:E (1.65) BS02 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969677 9f7m:F (1.65) BS01 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969678 9f7m:F (1.65) BS02 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969679 9f7m:G (1.65) BS01 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969680 9f7m:G (1.65) BS02 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969681 9f7m:H (1.65) BS01 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969682 9f7m:H (1.65) BS02 rna N/A GO:0000175 ... A0A285UWY4 39778863
    969683 9f7n:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969684 9f7n:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969685 9f7n:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969686 9f7n:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969687 9f7n:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969688 9f7n:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969689 9f7n:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969690 9f7n:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969691 9f7n:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969692 9f7n:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969693 9f7n:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969694 9f7n:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969695 9f7p:A (1.7) BS01 ZN N/A GO:0006508 ... P0DTD1 N/A
    969696 9f7q:A (2.3) BS01 ZN N/A GO:0006508 ... P0DTD1 N/A
    969697 9f7r:A (1.5) BS01 ZN N/A GO:0006508 ... P0DTD1 N/A
    969698 9f7s:A (1.8) BS01 ZN N/A GO:0006508 ... P0DTD1 N/A
    969699 9f7t:A (2.05) BS01 ZN N/A GO:0006508 ... P0DTD1 N/A
    969700 9f7v:A (2.59) BS01 16G N/A GO:0005829 ... Q9K3V1 N/A
    969701 9f7v:B (2.59) BS01 16G N/A GO:0005829 ... Q9K3V1 N/A
    969702 9f7w:A (1.25) BS01 peptide N/A GO:0003677 ... P37231 38927044
    969703 9f7w:A (1.25) BS02 2OH N/A GO:0003677 ... P37231 38927044
    969704 9f7w:A (1.25) BS03 2OH N/A GO:0003677 ... P37231 38927044
    969705 9f7x:A (1.63) BS01 peptide N/A GO:0003677 ... P37231 38927044
    969706 9f7x:A (1.63) BS02 H3W N/A GO:0003677 ... P37231 38927044
    969707 9f7y:A (1.8) BS01 ZN N/A GO:0006508 ... P0DTD1 N/A
    969708 9f81:A (3.02) BS01 A1IBA N/A GO:0003824 ... Q9BVS4 39716901
    969709 9f81:G (3.02) BS01 A1IBA N/A GO:0003824 ... Q9BVS4 39716901
    969710 9f82:A (3.1) BS01 peptide N/A N/A O31927 N/A
    969711 9f82:C (3.1) BS01 peptide N/A N/A O31927 N/A
    969712 9f82:E (3.1) BS01 peptide N/A N/A O31927 N/A
    969713 9f82:G (3.1) BS01 peptide N/A N/A O31927 N/A
    969714 9f84:A (1.9) BS01 A1IAP N/A GO:0016746 ... P28329 N/A
    969715 9f85:A (1.6) BS01 A1IAO N/A GO:0016746 ... P28329 N/A
    969716 9f8a:A (1.56) BS01 A1IA0 N/A GO:0004622 ... Q99685 39360636
    969717 9f8b:A (1.4) BS01 A1IA3 N/A GO:0004622 ... Q99685 39360636
    969718 9f8c:A (1.52) BS01 A1IA2 N/A GO:0004622 ... Q99685 39360636
    969719 9f8d:A (1.14) BS01 A1IA1 N/A GO:0004622 ... Q99685 39360636
    969720 9f8g:A (2.2) BS01 GTP N/A GO:0000226 ... P81947 39118608
    969721 9f8g:A (2.2) BS02 CA N/A GO:0000226 ... P81947 39118608
    969722 9f8g:B (2.2) BS01 GTP N/A GO:0000226 ... Q6B856 39118608
    969723 9f8g:B (2.2) BS02 A1IBN N/A GO:0000226 ... Q6B856 39118608
    969724 9f8h:A (1.47) BS01 RAL N/A GO:0017000 ... Q396C9 40156840
    969725 9f8h:A (1.47) BS02 RAL N/A GO:0017000 ... Q396C9 40156840
    969726 9f8h:B (1.47) BS01 RAL N/A GO:0017000 ... Q396C9 40156840
    969727 9f8h:B (1.47) BS02 RAL N/A GO:0017000 ... Q396C9 40156840
    969728 9f8i:A (1.39) BS01 A1IAE N/A GO:0017000 ... Q396C9 40156840
    969729 9f8i:A (1.39) BS02 A1IAE N/A GO:0017000 ... Q396C9 40156840
    969730 9f8i:B (1.39) BS01 A1IAE N/A GO:0017000 ... Q396C9 40156840
    969731 9f8i:B (1.39) BS02 A1IAE N/A GO:0017000 ... Q396C9 40156840
    969732 9f8i:C (1.39) BS01 A1IAE N/A GO:0017000 ... Q396C9 40156840
    969733 9f8i:C (1.39) BS02 A1IAE N/A GO:0017000 ... Q396C9 40156840
    969734 9f8i:D (1.39) BS01 A1IAE N/A GO:0017000 ... Q396C9 40156840
    969735 9f8i:D (1.39) BS02 A1IAE N/A GO:0017000 ... Q396C9 40156840
    969736 9f8j:A (1.6) BS01 A1IAG N/A GO:0017000 ... Q396C9 40156840
    969737 9f8j:A (1.6) BS02 A1IAG N/A GO:0017000 ... Q396C9 40156840
    969738 9f8j:B (1.6) BS01 A1IAG N/A GO:0017000 ... Q396C9 40156840
    969739 9f8j:B (1.6) BS02 A1IAG N/A GO:0017000 ... Q396C9 40156840
    969740 9f8j:C (1.6) BS01 A1IAG N/A GO:0017000 ... Q396C9 40156840
    969741 9f8j:C (1.6) BS02 A1IAG N/A GO:0017000 ... Q396C9 40156840
    969742 9f8j:D (1.6) BS01 A1IAG N/A GO:0017000 ... Q396C9 40156840
    969743 9f8j:D (1.6) BS02 A1IAG N/A GO:0017000 ... Q396C9 40156840
    969744 9f8k:A (1.57) BS01 A1IAH N/A GO:0017000 ... Q396C9 40156840
    969745 9f8k:B (1.57) BS01 A1IAH N/A GO:0017000 ... Q396C9 40156840
    969746 9f8l:A (1.38) BS01 A1IAL N/A GO:0017000 ... Q396C9 40156840
    969747 9f8l:B (1.38) BS01 A1IAL N/A GO:0017000 ... Q396C9 40156840
    969748 9f8m:A (1.43) BS01 A1IAK N/A GO:0017000 ... Q396C9 40156840
    969749 9f8m:A (1.43) BS02 A1IAK N/A GO:0017000 ... Q396C9 40156840
    969750 9f8m:B (1.43) BS01 A1IAK N/A GO:0017000 ... Q396C9 40156840
    969751 9f8m:B (1.43) BS02 A1IAK N/A GO:0017000 ... Q396C9 40156840
    969752 9f8m:C (1.43) BS01 A1IAK N/A GO:0017000 ... Q396C9 40156840
    969753 9f8m:C (1.43) BS02 A1IAK N/A GO:0017000 ... Q396C9 40156840
    969754 9f8m:D (1.43) BS01 A1IAK N/A GO:0017000 ... Q396C9 40156840
    969755 9f8m:D (1.43) BS02 A1IAK N/A GO:0017000 ... Q396C9 40156840
    969756 9f8n:A (1.32) BS01 A1IAD N/A GO:0017000 ... Q396C9 40156840
    969757 9f8n:B (1.32) BS01 A1IAD N/A GO:0017000 ... Q396C9 40156840
    969758 9f8n:B (1.32) BS02 A1IAD N/A GO:0017000 ... Q396C9 40156840
    969759 9f8o:A (1.57) BS01 A1IAF N/A GO:0017000 ... Q396C9 40156840
    969760 9f8o:A (1.57) BS02 A1IAF N/A GO:0017000 ... Q396C9 40156840
    969761 9f8o:B (1.57) BS01 A1IAF N/A GO:0017000 ... Q396C9 40156840
    969762 9f8o:B (1.57) BS02 A1IAF N/A GO:0017000 ... Q396C9 40156840
    969763 9f8o:C (1.57) BS01 A1IAF N/A GO:0017000 ... Q396C9 40156840
    969764 9f8o:C (1.57) BS02 A1IAF N/A GO:0017000 ... Q396C9 40156840
    969765 9f8o:D (1.57) BS01 A1IAF N/A GO:0017000 ... Q396C9 40156840
    969766 9f8o:D (1.57) BS02 A1IAF N/A GO:0017000 ... Q396C9 40156840
    969767 9f8p:A (1.36) BS01 A1IAI N/A GO:0017000 ... Q396C9 40156840
    969768 9f8p:A (1.36) BS02 A1IAI N/A GO:0017000 ... Q396C9 40156840
    969769 9f8p:B (1.36) BS01 A1IAI N/A GO:0017000 ... Q396C9 40156840
    969770 9f8p:B (1.36) BS02 A1IAI N/A GO:0017000 ... Q396C9 40156840
    969771 9f8q:A (1.34) BS01 A1IAJ N/A GO:0017000 ... Q396C9 40156840
    969772 9f8q:A (1.34) BS02 A1IAJ N/A GO:0017000 ... Q396C9 40156840
    969773 9f8q:B (1.34) BS01 A1IAJ N/A GO:0017000 ... Q396C9 40156840
    969774 9f8q:B (1.34) BS02 A1IAJ N/A GO:0017000 ... Q396C9 40156840
    969775 9f8r:A (1.58) BS01 A1IAN N/A GO:0017000 ... Q396C9 40156840
    969776 9f8r:A (1.58) BS02 A1IAN N/A GO:0017000 ... Q396C9 40156840
    969777 9f8r:B (1.58) BS01 A1IAN N/A GO:0017000 ... Q396C9 40156840
    969778 9f8r:B (1.58) BS02 A1IAN N/A GO:0017000 ... Q396C9 40156840
    969779 9f8r:C (1.58) BS01 A1IAN N/A GO:0017000 ... Q396C9 40156840
    969780 9f8r:C (1.58) BS02 A1IAN N/A GO:0017000 ... Q396C9 40156840
    969781 9f8r:D (1.58) BS01 A1IAN N/A GO:0017000 ... Q396C9 40156840
    969782 9f8r:D (1.58) BS02 A1IAN N/A GO:0017000 ... Q396C9 40156840
    969783 9f8s:A (1.69) BS01 A1IAM N/A GO:0017000 ... Q396C9 40156840
    969784 9f8s:A (1.69) BS02 A1IAM N/A GO:0017000 ... Q396C9 40156840
    969785 9f8s:B (1.69) BS01 A1IAM N/A GO:0017000 ... Q396C9 40156840
    969786 9f8s:B (1.69) BS02 A1IAM N/A GO:0017000 ... Q396C9 40156840
    969787 9f8t:A (1.711) BS01 peptide N/A GO:0005198 ... P49951 N/A
    969788 9f8t:A (1.711) BS02 peptide N/A GO:0005198 ... P49951 N/A
    969789 9f8u:A (2.5) BS01 A1IBK N/A GO:0000702 ... O08760 41195166
    969790 9f8v:A (2.4) BS01 A1IBL N/A GO:0000702 ... O08760 41195166
    969791 9f8v:B (2.4) BS01 A1IBL N/A GO:0000702 ... O08760 41195166
    969792 9f8v:C (2.4) BS01 A1IBL N/A GO:0000702 ... O08760 41195166
    969793 9f8x:A (1.498) BS01 CUA N/A GO:0004129 ... A0A368XMX8 38720157
    969794 9f8x:A (1.498) BS02 CUK N/A GO:0004129 ... A0A368XMX8 38720157
    969795 9f8x:A (1.498) BS03 CA N/A GO:0004129 ... A0A368XMX8 38720157
    969796 9f8x:A (1.498) BS04 CA N/A GO:0004129 ... A0A368XMX8 38720157
    969797 9f8x:B (1.498) BS01 CUA N/A GO:0004129 ... A0A368XMX8 38720157
    969798 9f8x:B (1.498) BS02 CUK N/A GO:0004129 ... A0A368XMX8 38720157
    969799 9f8x:B (1.498) BS03 CA N/A GO:0004129 ... A0A368XMX8 38720157
    969800 9f8x:B (1.498) BS04 CA N/A GO:0004129 ... A0A368XMX8 38720157

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).