SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    969801 9f8x:C (1.498) BS01 CUA N/A GO:0004129 ... A0A368XMX8 38720157
    969802 9f8x:C (1.498) BS02 CUK N/A GO:0004129 ... A0A368XMX8 38720157
    969803 9f8x:C (1.498) BS03 CA N/A GO:0004129 ... A0A368XMX8 38720157
    969804 9f8x:C (1.498) BS04 CA N/A GO:0004129 ... A0A368XMX8 38720157
    969805 9f8x:D (1.498) BS01 CUA N/A GO:0004129 ... A0A368XMX8 38720157
    969806 9f8x:D (1.498) BS02 CUK N/A GO:0004129 ... A0A368XMX8 38720157
    969807 9f8x:D (1.498) BS03 CA N/A GO:0004129 ... A0A368XMX8 38720157
    969808 9f8x:D (1.498) BS04 CA N/A GO:0004129 ... A0A368XMX8 38720157
    969809 9f8z:A (2.503) BS01 A1IBJ N/A GO:0000702 ... O08760 41195166
    969810 9f8z:B (2.503) BS01 A1IBJ N/A GO:0000702 ... O08760 41195166
    969811 9f92:A (1.32) BS01 A1IAX N/A GO:0002047 ... O69754 39163032
    969812 9f93:A (1.54) BS01 A1IAV N/A GO:0002047 ... O69754 39163032
    969813 9f93:A (1.54) BS02 BU3 N/A GO:0002047 ... O69754 39163032
    969814 9f94:A (1.32) BS01 A1IAY N/A GO:0002047 ... O69754 39163032
    969815 9f95:A (1.46) BS01 A1IAU N/A GO:0002047 ... O69754 39163032
    969816 9f96:A (1.27) BS01 A1IAW N/A GO:0002047 ... O69754 39163032
    969817 9f99:A (2.803) BS01 A1IA5 N/A GO:0003677 ... Q96NY9 39015284
    969818 9f99:A (2.803) BS02 MG N/A GO:0003677 ... Q96NY9 39015284
    969819 9f99:A (2.803) BS03 MG N/A GO:0003677 ... Q96NY9 39015284
    969820 9f99:C (2.803) BS01 A1IA5 N/A GO:0003677 ... Q96NY9 39015284
    969821 9f99:C (2.803) BS02 MG N/A GO:0003677 ... Q96NY9 39015284
    969822 9f99:C (2.803) BS03 MG N/A GO:0003677 ... Q96NY9 39015284
    969823 9f99:E (2.803) BS01 A1IA5 N/A GO:0003677 ... Q96NY9 39015284
    969824 9f99:E (2.803) BS02 A1IA5 N/A GO:0003677 ... Q96NY9 39015284
    969825 9f99:E (2.803) BS03 MG N/A GO:0003677 ... Q96NY9 39015284
    969826 9f99:E (2.803) BS04 MG N/A GO:0003677 ... Q96NY9 39015284
    969827 9f99:G (2.803) BS01 A1IA5 N/A GO:0003677 ... Q96NY9 39015284
    969828 9f99:G (2.803) BS02 A1IA5 N/A GO:0003677 ... Q96NY9 39015284
    969829 9f99:G (2.803) BS03 MG N/A GO:0003677 ... Q96NY9 39015284
    969830 9f9a:A (2.911) BS01 A1IA6 N/A GO:0003677 ... Q96NY9 39015284
    969831 9f9a:A (2.911) BS02 MG N/A GO:0003677 ... Q96NY9 39015284
    969832 9f9a:A (2.911) BS03 MG N/A GO:0003677 ... Q96NY9 39015284
    969833 9f9a:C (2.911) BS01 A1IA6 N/A GO:0003677 ... Q96NY9 39015284
    969834 9f9a:C (2.911) BS02 MG N/A GO:0003677 ... Q96NY9 39015284
    969835 9f9a:C (2.911) BS03 MG N/A GO:0003677 ... Q96NY9 39015284
    969836 9f9a:E (2.911) BS01 A1IA6 N/A GO:0003677 ... Q96NY9 39015284
    969837 9f9a:E (2.911) BS02 A1IA6 N/A GO:0003677 ... Q96NY9 39015284
    969838 9f9a:E (2.911) BS03 MG N/A GO:0003677 ... Q96NY9 39015284
    969839 9f9a:E (2.911) BS04 MG N/A GO:0003677 ... Q96NY9 39015284
    969840 9f9a:G (2.911) BS01 A1IA6 N/A GO:0003677 ... Q96NY9 39015284
    969841 9f9a:G (2.911) BS02 A1IA6 N/A GO:0003677 ... Q96NY9 39015284
    969842 9f9a:G (2.911) BS03 MG N/A GO:0003677 ... Q96NY9 39015284
    969843 9f9a:G (2.911) BS04 MG N/A GO:0003677 ... Q96NY9 39015284
    969844 9f9b:A (2.0) BS01 RET N/A GO:0005216 ... P02945 39604356
    969845 9f9c:A (2.0) BS01 RET N/A GO:0005216 ... P02945 39604356
    969846 9f9d:A (1.7) BS01 RET N/A GO:0005216 ... P02945 39604356
    969847 9f9e:A (1.8) BS01 RET N/A GO:0005216 ... P02945 39604356
    969848 9f9f:A (1.8) BS01 RET N/A GO:0005216 ... P02945 39604356
    969849 9f9g:A (1.44) BS01 RET N/A GO:0005216 ... P02945 39604356
    969850 9f9h:A (1.66) BS01 RET N/A GO:0005216 ... P02945 39604356
    969851 9f9i:A (1.6) BS01 RET N/A GO:0005216 ... P02945 39604356
    969852 9f9j:A (1.76) BS01 RET N/A GO:0005216 ... P02945 39604356
    969853 9f9k:A (2.728) BS01 MG N/A GO:0003677 ... Q96NY9 39015284
    969854 9f9k:A (2.728) BS02 A1IA7 N/A GO:0003677 ... Q96NY9 39015284
    969855 9f9k:A (2.728) BS03 A1IA7 N/A GO:0003677 ... Q96NY9 39015284
    969856 9f9l:A (2.02) BS01 MG N/A GO:0003677 ... Q96NY9 39015284
    969857 9f9l:A (2.02) BS02 A1IA8 N/A GO:0003677 ... Q96NY9 39015284
    969858 9f9l:C (2.02) BS01 MG N/A GO:0003677 ... Q96NY9 39015284
    969859 9f9l:C (2.02) BS02 A1IA8 N/A GO:0003677 ... Q96NY9 39015284
    969860 9f9m:A (2.469) BS01 MG N/A GO:0003677 ... Q96NY9 39015284
    969861 9f9m:A (2.469) BS02 MG N/A GO:0003677 ... Q96NY9 39015284
    969862 9f9m:A (2.469) BS03 A1IA4 N/A GO:0003677 ... Q96NY9 39015284
    969863 9f9m:C (2.469) BS01 MG N/A GO:0003677 ... Q96NY9 39015284
    969864 9f9m:C (2.469) BS02 A1IA4 N/A GO:0003677 ... Q96NY9 39015284
    969865 9f9n:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969866 9f9n:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969867 9f9n:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969868 9f9n:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969869 9f9n:B (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969870 9f9n:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969871 9f9n:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969872 9f9n:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969873 9f9n:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969874 9f9n:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969875 9f9n:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969876 9f9n:E (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969877 9f9n:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969878 9f9n:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969879 9f9o:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969880 9f9o:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969881 9f9o:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969882 9f9o:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969883 9f9o:B (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969884 9f9o:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969885 9f9o:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969886 9f9o:C (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969887 9f9o:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969888 9f9o:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969889 9f9o:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969890 9f9o:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969891 9f9o:E (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    969892 9f9o:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    969893 9f9o:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    969894 9f9r:A (2.5) BS01 peptide N/A N/A N/A N/A
    969895 9f9r:C (2.5) BS01 peptide N/A N/A N/A N/A
    969896 9f9r:E (2.5) BS01 peptide N/A N/A N/A N/A
    969897 9f9r:G (2.5) BS01 peptide N/A N/A N/A N/A
    969898 9f9s:CN (2.9) BS01 rna N/A GO:0003677 ... O14467 39566505
    969899 9f9s:CN (2.9) BS02 rna N/A GO:0003677 ... O14467 39566505
    969900 9f9s:LA (2.9) BS01 rna N/A GO:0000027 ... P05739 39566505
    969901 9f9s:LB (2.9) BS01 rna N/A GO:0000463 ... P05737 39566505
    969902 9f9s:LB (2.9) BS02 rna N/A GO:0000463 ... P05737 39566505
    969903 9f9s:LC (2.9) BS01 rna N/A GO:0000470 ... P17076 39566505
    969904 9f9s:LC (2.9) BS02 rna N/A GO:0000470 ... P17076 39566505
    969905 9f9s:LD (2.9) BS01 rna N/A GO:0002181 ... P05738 39566505
    969906 9f9s:LE (2.9) BS01 rna N/A GO:0000027 ... P41805 39566505
    969907 9f9s:LE (2.9) BS02 rna N/A GO:0000027 ... P41805 39566505
    969908 9f9s:LF (2.9) BS01 rna N/A GO:0000027 ... P0C0W9 39566505
    969909 9f9s:LF (2.9) BS02 rna N/A GO:0000027 ... P0C0W9 39566505
    969910 9f9s:LG (2.9) BS01 rna N/A GO:0002181 ... Q12690 39566505
    969911 9f9s:LG (2.9) BS02 rna N/A GO:0002181 ... Q12690 39566505
    969912 9f9s:LH (2.9) BS01 rna N/A GO:0000027 ... P36105 39566505
    969913 9f9s:LI (2.9) BS01 rna N/A GO:0000470 ... P05748 39566505
    969914 9f9s:LI (2.9) BS02 rna N/A GO:0000470 ... P05748 39566505
    969915 9f9s:LJ (2.9) BS01 rna N/A GO:0000470 ... P26784 39566505
    969916 9f9s:LK (2.9) BS01 rna N/A GO:0000448 ... P05740 39566505
    969917 9f9s:LK (2.9) BS02 rna N/A GO:0000448 ... P05740 39566505
    969918 9f9s:LL (2.9) BS01 rna N/A GO:0002181 ... P0CX49 39566505
    969919 9f9s:LM (2.9) BS01 rna N/A GO:0002181 ... P0CX82 39566505
    969920 9f9s:LM (2.9) BS02 rna N/A GO:0002181 ... P0CX82 39566505
    969921 9f9s:LN (2.9) BS01 rna N/A GO:0002181 ... P0CX23 39566505
    969922 9f9s:LN (2.9) BS02 rna N/A GO:0002181 ... P0CX23 39566505
    969923 9f9s:LO (2.9) BS01 rna N/A GO:0002181 ... Q02753 39566505
    969924 9f9s:LO (2.9) BS02 rna N/A GO:0002181 ... Q02753 39566505
    969925 9f9s:La (2.9) BS01 rna N/A GO:0002181 ... P0CX41 39566505
    969926 9f9s:Lb (2.9) BS01 rna N/A GO:0002181 ... P0CX25 39566505
    969927 9f9s:Lb (2.9) BS02 rna N/A GO:0002181 ... P0CX25 39566505
    969928 9f9s:Lb (2.9) BS03 ZN N/A GO:0002181 ... P0CX25 39566505
    969929 9f9s:Lc (2.9) BS01 rna N/A GO:0002181 ... P0CX27 39566505
    969930 9f9s:Lc (2.9) BS02 ZN N/A GO:0002181 ... P0CX27 39566505
    969931 9f9s:Le (2.9) BS01 rna N/A GO:0000027 ... P0CH08 39566505
    969932 9f9s:Le (2.9) BS02 ZN N/A GO:0000027 ... P0CH08 39566505
    969933 9f9s:Lf (2.9) BS01 rna N/A GO:0002181 ... P04650 39566505
    969934 9f9s:Lf (2.9) BS02 rna N/A GO:0002181 ... P04650 39566505
    969935 9f9s:Lg (2.9) BS01 rna N/A GO:0002181 ... P49167 39566505
    969936 9f9s:Lh (2.9) BS01 rna N/A GO:0000448 ... P49166 39566505
    969937 9f9s:Lh (2.9) BS02 rna N/A GO:0000448 ... P49166 39566505
    969938 9f9s:Lh (2.9) BS03 ZN N/A GO:0000448 ... P49166 39566505
    969939 9f9s:Li (2.9) BS01 rna N/A GO:0000470 ... P05745 39566505
    969940 9f9s:Lj (2.9) BS01 rna N/A GO:0000463 ... P0CX84 39566505
    969941 9f9s:Lj (2.9) BS02 rna N/A GO:0000463 ... P0CX84 39566505
    969942 9f9s:Lk (2.9) BS01 rna N/A GO:0002181 ... P87262 39566505
    969943 9f9s:Lk (2.9) BS02 ZN N/A GO:0002181 ... P87262 39566505
    969944 9f9s:Ll (2.9) BS01 rna N/A GO:0000027 ... P05744 39566505
    969945 9f9s:Lm (2.9) BS01 rna N/A GO:0002181 ... P38061 39566505
    969946 9f9s:Ln (2.9) BS01 rna N/A GO:0002181 ... P0C2H8 39566505
    969947 9f9s:Lo (2.9) BS01 rna N/A GO:0002181 ... P14120 39566505
    969948 9f9s:Lp (2.9) BS01 rna N/A GO:0002181 ... P05747 39566505
    969949 9f9s:Lq (2.9) BS01 rna N/A GO:0002181 ... P02406 39566505
    969950 9f9s:Lr (2.9) BS01 rna N/A GO:0002181 ... P0C2H6 39566505
    969951 9f9s:Ls (2.9) BS01 rna N/A GO:0002181 ... P05743 39566505
    969952 9f9s:Ls (2.9) BS02 rna N/A GO:0002181 ... P05743 39566505
    969953 9f9s:Lt (2.9) BS01 rna N/A GO:0000027 ... P04456 39566505
    969954 9f9s:Lt (2.9) BS02 rna N/A GO:0000027 ... P04456 39566505
    969955 9f9s:Lu (2.9) BS01 rna N/A GO:0002181 ... P04449 39566505
    969956 9f9s:Lu (2.9) BS02 rna N/A GO:0002181 ... P04449 39566505
    969957 9f9s:Lv (2.9) BS01 rna N/A GO:0002181 ... P05749 39566505
    969958 9f9s:Lw (2.9) BS01 rna N/A GO:0002181 ... P0CX45 39566505
    969959 9f9s:Lw (2.9) BS02 rna N/A GO:0002181 ... P0CX45 39566505
    969960 9f9s:Lx (2.9) BS01 rna N/A GO:0000027 ... P14126 39566505
    969961 9f9s:Ly (2.9) BS01 rna N/A GO:0002181 ... P10664 39566505
    969962 9f9s:Ly (2.9) BS02 rna N/A GO:0002181 ... P10664 39566505
    969963 9f9s:Lz (2.9) BS01 rna N/A GO:0000027 ... P26321 39566505
    969964 9f9s:Lz (2.9) BS02 rna N/A GO:0000027 ... P26321 39566505
    969965 9f9s:MA (2.9) BS01 rna N/A GO:0000027 ... Q02326 39566505
    969966 9f9s:MB (2.9) BS01 rna N/A GO:0000463 ... P05737 39566505
    969967 9f9s:MB (2.9) BS02 rna N/A GO:0000463 ... P05737 39566505
    969968 9f9s:MC (2.9) BS01 rna N/A GO:0000470 ... P17076 39566505
    969969 9f9s:MC (2.9) BS02 rna N/A GO:0000470 ... P17076 39566505
    969970 9f9s:MD (2.9) BS01 rna N/A GO:0002181 ... P05738 39566505
    969971 9f9s:ME (2.9) BS01 rna N/A GO:0000027 ... P41805 39566505
    969972 9f9s:ME (2.9) BS02 rna N/A GO:0000027 ... P41805 39566505
    969973 9f9s:ME (2.9) BS03 rna N/A GO:0000027 ... P41805 39566505
    969974 9f9s:MF (2.9) BS01 rna N/A GO:0000027 ... P0C0W9 39566505
    969975 9f9s:MF (2.9) BS02 rna N/A GO:0000027 ... P0C0W9 39566505
    969976 9f9s:MG (2.9) BS01 rna N/A GO:0002181 ... Q12690 39566505
    969977 9f9s:MG (2.9) BS02 rna N/A GO:0002181 ... Q12690 39566505
    969978 9f9s:MH (2.9) BS01 rna N/A GO:0000027 ... P36105 39566505
    969979 9f9s:MI (2.9) BS01 rna N/A GO:0000470 ... P05748 39566505
    969980 9f9s:MI (2.9) BS02 rna N/A GO:0000470 ... P05748 39566505
    969981 9f9s:MJ (2.9) BS01 rna N/A GO:0000470 ... P26784 39566505
    969982 9f9s:MK (2.9) BS01 rna N/A GO:0000448 ... P05740 39566505
    969983 9f9s:MK (2.9) BS02 rna N/A GO:0000448 ... P05740 39566505
    969984 9f9s:ML (2.9) BS01 rna N/A GO:0002181 ... P0CX49 39566505
    969985 9f9s:MM (2.9) BS01 rna N/A GO:0002181 ... P0CX82 39566505
    969986 9f9s:MM (2.9) BS02 rna N/A GO:0002181 ... P0CX82 39566505
    969987 9f9s:MN (2.9) BS01 rna N/A GO:0002181 ... P0CX23 39566505
    969988 9f9s:MN (2.9) BS02 rna N/A GO:0002181 ... P0CX23 39566505
    969989 9f9s:MO (2.9) BS01 rna N/A GO:0002181 ... Q02753 39566505
    969990 9f9s:MO (2.9) BS02 rna N/A GO:0002181 ... Q02753 39566505
    969991 9f9s:MP (2.9) BS01 rna N/A GO:0000027 ... P0CX53 39566505
    969992 9f9s:MQ (2.9) BS01 rna N/A GO:0000027 ... P05317 39566505
    969993 9f9s:Ma (2.9) BS01 rna N/A GO:0002181 ... P0CX41 39566505
    969994 9f9s:Mb (2.9) BS01 rna N/A GO:0002181 ... P0CX25 39566505
    969995 9f9s:Mb (2.9) BS02 rna N/A GO:0002181 ... P0CX25 39566505
    969996 9f9s:Mb (2.9) BS03 ZN N/A GO:0002181 ... P0CX25 39566505
    969997 9f9s:Mc (2.9) BS01 rna N/A GO:0002181 ... P0CX27 39566505
    969998 9f9s:Mc (2.9) BS02 rna N/A GO:0002181 ... P0CX27 39566505
    969999 9f9s:Mc (2.9) BS03 ZN N/A GO:0002181 ... P0CX27 39566505
    970000 9f9s:Me (2.9) BS01 rna N/A GO:0000027 ... P0CH08 39566505

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).