SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    970001 9f9s:Me (2.9) BS02 ZN N/A GO:0000027 ... P0CH08 39566505
    970002 9f9s:Mf (2.9) BS01 rna N/A GO:0002181 ... P04650 39566505
    970003 9f9s:Mf (2.9) BS02 rna N/A GO:0002181 ... P04650 39566505
    970004 9f9s:Mg (2.9) BS01 rna N/A GO:0002181 ... P49167 39566505
    970005 9f9s:Mh (2.9) BS01 rna N/A GO:0000448 ... P49166 39566505
    970006 9f9s:Mh (2.9) BS02 rna N/A GO:0000448 ... P49166 39566505
    970007 9f9s:Mh (2.9) BS03 ZN N/A GO:0000448 ... P49166 39566505
    970008 9f9s:Mi (2.9) BS01 rna N/A GO:0000470 ... P05745 39566505
    970009 9f9s:Mj (2.9) BS01 rna N/A GO:0000463 ... P0CX84 39566505
    970010 9f9s:Mj (2.9) BS02 rna N/A GO:0000463 ... P0CX84 39566505
    970011 9f9s:Mk (2.9) BS01 rna N/A GO:0002181 ... P87262 39566505
    970012 9f9s:Mk (2.9) BS02 ZN N/A GO:0002181 ... P87262 39566505
    970013 9f9s:Ml (2.9) BS01 rna N/A GO:0000027 ... P05744 39566505
    970014 9f9s:Mm (2.9) BS01 rna N/A GO:0002181 ... P38061 39566505
    970015 9f9s:Mn (2.9) BS01 rna N/A GO:0002181 ... P0C2H8 39566505
    970016 9f9s:Mo (2.9) BS01 rna N/A GO:0002181 ... P14120 39566505
    970017 9f9s:Mp (2.9) BS01 rna N/A GO:0002181 ... P05747 39566505
    970018 9f9s:Mq (2.9) BS01 rna N/A GO:0002181 ... P02406 39566505
    970019 9f9s:Mr (2.9) BS01 rna N/A GO:0002181 ... P0C2H6 39566505
    970020 9f9s:Ms (2.9) BS01 rna N/A GO:0002181 ... P05743 39566505
    970021 9f9s:Ms (2.9) BS02 rna N/A GO:0002181 ... P05743 39566505
    970022 9f9s:Mt (2.9) BS01 rna N/A GO:0000027 ... P04456 39566505
    970023 9f9s:Mt (2.9) BS02 rna N/A GO:0000027 ... P04456 39566505
    970024 9f9s:Mu (2.9) BS01 rna N/A GO:0002181 ... P04449 39566505
    970025 9f9s:Mv (2.9) BS01 rna N/A GO:0002181 ... P05749 39566505
    970026 9f9s:Mw (2.9) BS01 rna N/A GO:0002181 ... P0CX45 39566505
    970027 9f9s:Mw (2.9) BS02 rna N/A GO:0002181 ... P0CX45 39566505
    970028 9f9s:Mx (2.9) BS01 rna N/A GO:0000027 ... P14126 39566505
    970029 9f9s:My (2.9) BS01 rna N/A GO:0002181 ... P10664 39566505
    970030 9f9s:My (2.9) BS02 rna N/A GO:0002181 ... P10664 39566505
    970031 9f9s:Mz (2.9) BS01 rna N/A GO:0000027 ... P26321 39566505
    970032 9f9s:Mz (2.9) BS02 rna N/A GO:0000027 ... P26321 39566505
    970033 9f9s:RA (2.9) BS01 rna N/A GO:0000054 ... P39938 39566505
    970034 9f9s:RA (2.9) BS02 rna N/A GO:0000054 ... P39938 39566505
    970035 9f9s:RB (2.9) BS01 rna N/A GO:0000028 ... P35997 39566505
    970036 9f9s:RB (2.9) BS02 ZN N/A GO:0000028 ... P35997 39566505
    970037 9f9s:RC (2.9) BS01 rna N/A GO:0000028 ... Q3E7X9 39566505
    970038 9f9s:RC (2.9) BS02 rna N/A GO:0000028 ... Q3E7X9 39566505
    970039 9f9s:RD (2.9) BS01 rna N/A GO:0002181 ... P41057 39566505
    970040 9f9s:RE (2.9) BS01 rna N/A GO:0002181 ... P0CX33 39566505
    970041 9f9s:RF (2.9) BS01 rna N/A GO:0000028 ... P05759 39566505
    970042 9f9s:RG (2.9) BS01 rna N/A GO:0001965 ... P38011 39566505
    970043 9f9s:Ra (2.9) BS01 rna N/A GO:0000028 ... P32905 39566505
    970044 9f9s:Rb (2.9) BS01 rna N/A GO:0000462 ... P33442 39566505
    970045 9f9s:Rb (2.9) BS02 rna N/A GO:0000462 ... P33442 39566505
    970046 9f9s:Rc (2.9) BS01 rna N/A GO:0000054 ... P25443 39566505
    970047 9f9s:Rc (2.9) BS02 rna N/A GO:0000054 ... P25443 39566505
    970048 9f9s:Rd (2.9) BS01 rna N/A GO:0000054 ... P05750 39566505
    970049 9f9s:Rd (2.9) BS02 rna N/A GO:0000054 ... P05750 39566505
    970050 9f9s:Re (2.9) BS01 rna N/A GO:0002181 ... P0CX35 39566505
    970051 9f9s:Rf (2.9) BS01 rna N/A GO:0000054 ... P26783 39566505
    970052 9f9s:Rf (2.9) BS02 rna N/A GO:0000054 ... P26783 39566505
    970053 9f9s:Rg (2.9) BS01 rna N/A GO:0000462 ... P0CX37 39566505
    970054 9f9s:Rh (2.9) BS01 rna N/A GO:0002181 ... P26786 39566505
    970055 9f9s:Ri (2.9) BS01 rna N/A GO:0000462 ... P0CX39 39566505
    970056 9f9s:Rj (2.9) BS01 rna N/A GO:0000462 ... O13516 39566505
    970057 9f9s:Rk (2.9) BS01 rna N/A GO:0000054 ... Q08745 39566505
    970058 9f9s:Rl (2.9) BS01 rna N/A GO:0000028 ... P0CX47 39566505
    970059 9f9s:Rm (2.9) BS01 rna N/A GO:0000028 ... P48589 39566505
    970060 9f9s:Rn (2.9) BS01 rna N/A GO:0000462 ... P05756 39566505
    970061 9f9s:Ro (2.9) BS01 rna N/A GO:0000028 ... P39516 39566505
    970062 9f9s:Rp (2.9) BS01 rna N/A GO:0000054 ... Q01855 39566505
    970063 9f9s:Rq (2.9) BS01 rna N/A GO:0000462 ... P0CX51 39566505
    970064 9f9s:Rr (2.9) BS01 rna N/A GO:0000028 ... P02407 39566505
    970065 9f9s:Rs (2.9) BS01 rna N/A GO:0000054 ... P0CX55 39566505
    970066 9f9s:Rt (2.9) BS01 rna N/A GO:0000054 ... P07280 39566505
    970067 9f9s:Ru (2.9) BS01 rna N/A GO:0000462 ... P38701 39566505
    970068 9f9s:Rv (2.9) BS01 rna N/A GO:0000447 ... P0C0V8 39566505
    970069 9f9s:Rw (2.9) BS01 rna N/A GO:0002181 ... P0C0W1 39566505
    970070 9f9s:Rx (2.9) BS01 rna N/A GO:0000462 ... P0CX29 39566505
    970071 9f9s:Ry (2.9) BS01 rna N/A GO:0000462 ... P0CX31 39566505
    970072 9f9s:Rz (2.9) BS01 rna N/A GO:0002181 ... Q3E792 39566505
    970073 9f9s:SA (2.9) BS01 rna N/A GO:0000054 ... P39938 39566505
    970074 9f9s:SB (2.9) BS01 rna N/A GO:0000028 ... P35997 39566505
    970075 9f9s:SC (2.9) BS01 rna N/A GO:0000028 ... P0C0X0 39566505
    970076 9f9s:SC (2.9) BS02 rna N/A GO:0000028 ... P0C0X0 39566505
    970077 9f9s:SD (2.9) BS01 rna N/A GO:0002181 ... P41057 39566505
    970078 9f9s:SD (2.9) BS02 ZN N/A GO:0002181 ... P41057 39566505
    970079 9f9s:SE (2.9) BS01 rna N/A GO:0002181 ... P0CX33 39566505
    970080 9f9s:SF (2.9) BS01 rna N/A GO:0000028 ... P05759 39566505
    970081 9f9s:SF (2.9) BS02 ZN N/A GO:0000028 ... P05759 39566505
    970082 9f9s:SG (2.9) BS01 rna N/A GO:0001965 ... P38011 39566505
    970083 9f9s:Sa (2.9) BS01 rna N/A GO:0000028 ... P32905 39566505
    970084 9f9s:Sb (2.9) BS01 rna N/A GO:0000462 ... P33442 39566505
    970085 9f9s:Sc (2.9) BS01 rna N/A GO:0000054 ... P25443 39566505
    970086 9f9s:Sd (2.9) BS01 rna N/A GO:0000054 ... P05750 39566505
    970087 9f9s:Se (2.9) BS01 rna N/A GO:0002181 ... P0CX35 39566505
    970088 9f9s:Se (2.9) BS02 MG N/A GO:0002181 ... P0CX35 39566505
    970089 9f9s:Sf (2.9) BS01 rna N/A GO:0000054 ... P26783 39566505
    970090 9f9s:Sf (2.9) BS02 rna N/A GO:0000054 ... P26783 39566505
    970091 9f9s:Sf (2.9) BS03 MG N/A GO:0000054 ... P26783 39566505
    970092 9f9s:Sg (2.9) BS01 rna N/A GO:0000462 ... P0CX37 39566505
    970093 9f9s:Sh (2.9) BS01 rna N/A GO:0002181 ... P26786 39566505
    970094 9f9s:Si (2.9) BS01 rna N/A GO:0000462 ... P0CX39 39566505
    970095 9f9s:Si (2.9) BS02 rna N/A GO:0000462 ... P0CX39 39566505
    970096 9f9s:Sj (2.9) BS01 rna N/A GO:0000462 ... O13516 39566505
    970097 9f9s:Sk (2.9) BS01 rna N/A GO:0000054 ... Q08745 39566505
    970098 9f9s:Sl (2.9) BS01 rna N/A GO:0000028 ... P0CX47 39566505
    970099 9f9s:Sm (2.9) BS01 rna N/A GO:0000028 ... P48589 39566505
    970100 9f9s:Sn (2.9) BS01 rna N/A GO:0000462 ... P05756 39566505
    970101 9f9s:So (2.9) BS01 rna N/A GO:0000028 ... P06367 39566505
    970102 9f9s:Sp (2.9) BS01 rna N/A GO:0000054 ... Q01855 39566505
    970103 9f9s:Sq (2.9) BS01 rna N/A GO:0000462 ... P0CX51 39566505
    970104 9f9s:Sr (2.9) BS01 rna N/A GO:0000028 ... P14127 39566505
    970105 9f9s:Ss (2.9) BS01 rna N/A GO:0000054 ... P0CX55 39566505
    970106 9f9s:St (2.9) BS01 rna N/A GO:0000054 ... P07280 39566505
    970107 9f9s:Su (2.9) BS01 rna N/A GO:0000462 ... P38701 39566505
    970108 9f9s:Sv (2.9) BS01 rna N/A GO:0000447 ... P0C0V8 39566505
    970109 9f9s:Sw (2.9) BS01 rna N/A GO:0002181 ... P0C0W1 39566505
    970110 9f9s:Sx (2.9) BS01 rna N/A GO:0000462 ... P0CX29 39566505
    970111 9f9s:Sx (2.9) BS02 MG N/A GO:0000462 ... P0CX29 39566505
    970112 9f9s:Sy (2.9) BS01 rna N/A GO:0000462 ... P0CX31 39566505
    970113 9f9s:Sz (2.9) BS01 rna N/A GO:0002181 ... Q3E792 39566505
    970114 9f9s:Sz (2.9) BS02 rna N/A GO:0002181 ... Q3E792 39566505
    970115 9f9u:A (1.68) BS01 ZN N/A N/A Q980V4 39504966
    970116 9f9v:B (1.57) BS01 CA N/A N/A A0ACD6B9R8 39738071
    970117 9f9w:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970118 9f9w:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970119 9f9w:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970120 9f9w:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970121 9f9w:B (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    970122 9f9w:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970123 9f9w:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970124 9f9w:C (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    970125 9f9w:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970126 9f9w:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970127 9f9w:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970128 9f9w:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970129 9f9w:E (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    970130 9f9w:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970131 9f9w:F (3.0) BS02 ADP N/A GO:0003677 ... P03070 40108462
    970132 9f9x:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970133 9f9x:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970134 9f9x:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970135 9f9x:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970136 9f9x:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970137 9f9x:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970138 9f9x:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970139 9f9x:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970140 9f9x:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970141 9f9x:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970142 9f9x:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970143 9f9x:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970144 9f9z:A (2.279) BS01 A1IBI N/A GO:0004336 ... P04062 38932616
    970145 9fa1:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970146 9fa1:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970147 9fa1:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970148 9fa1:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970149 9fa1:B (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    970150 9fa1:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970151 9fa1:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970152 9fa1:C (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    970153 9fa1:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970154 9fa1:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970155 9fa1:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970156 9fa1:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970157 9fa1:E (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    970158 9fa1:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970159 9fa1:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970160 9fa2:A (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970161 9fa2:A (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970162 9fa2:B (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970163 9fa2:B (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970164 9fa2:B (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    970165 9fa2:C (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970166 9fa2:C (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970167 9fa2:C (3.0) BS03 ATP N/A GO:0003677 ... P03070 40108462
    970168 9fa2:D (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970169 9fa2:D (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970170 9fa2:E (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970171 9fa2:E (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970172 9fa2:F (3.0) BS01 dna N/A GO:0003677 ... P03070 40108462
    970173 9fa2:F (3.0) BS02 ATP N/A GO:0003677 ... P03070 40108462
    970174 9fa3:A (1.36) BS01 A1IBC N/A GO:0004348 ... P04062 38932616
    970175 9fa6:A (1.49) BS01 A1IBE N/A GO:0004348 ... P04062 38932616
    970176 9fa6:A (1.49) BS02 A1IBG N/A GO:0004348 ... P04062 38932616
    970177 9fa6:A (1.49) BS03 A1IBE N/A GO:0004348 ... P04062 38932616
    970178 9fa9:A (2.75) BS01 A1IBS N/A GO:0005198 ... P21404 39292620
    970179 9fad:A (1.8) BS01 A1IBD N/A GO:0004348 ... P04062 38932616
    970180 9fae:A (1.57354) BS01 PKM N/A GO:0007155 ... D4N3K6 39883726
    970181 9fae:A (1.57354) BS02 PKM N/A GO:0007155 ... D4N3K6 39883726
    970182 9fae:B (1.57354) BS01 PKM N/A GO:0007155 ... D4N3K6 39883726
    970183 9fae:B (1.57354) BS02 PKM N/A GO:0007155 ... D4N3K6 39883726
    970184 9fae:C (1.57354) BS01 PKM N/A GO:0007155 ... D4N3K6 39883726
    970185 9fae:C (1.57354) BS02 PKM N/A GO:0007155 ... D4N3K6 39883726
    970186 9faf:A (1.76) BS01 ANA N/A GO:0007155 ... D4N3K6 39883726
    970187 9faf:A (1.76) BS02 ANA N/A GO:0007155 ... D4N3K6 39883726
    970188 9faf:B (1.76) BS01 ANA N/A GO:0007155 ... D4N3K6 39883726
    970189 9faf:B (1.76) BS02 ANA N/A GO:0007155 ... D4N3K6 39883726
    970190 9faf:C (1.76) BS01 ANA N/A GO:0007155 ... D4N3K6 39883726
    970191 9fag:A (1.9) BS01 SIO N/A GO:0007155 ... D4N3K6 39883726
    970192 9fag:A (1.9) BS02 SIO N/A GO:0007155 ... D4N3K6 39883726
    970193 9fag:B (1.9) BS01 SIO N/A GO:0007155 ... D4N3K6 39883726
    970194 9fag:C (1.9) BS01 SIO N/A GO:0007155 ... D4N3K6 39883726
    970195 9fag:C (1.9) BS02 SIO N/A GO:0007155 ... D4N3K6 39883726
    970196 9fah:A (1.65337) BS01 ANA N/A GO:0007155 ... Q64823 39883726
    970197 9fah:A (1.65337) BS02 ZN N/A GO:0007155 ... Q64823 39883726
    970198 9fah:B (1.65337) BS01 ANA N/A GO:0007155 ... Q64823 39883726
    970199 9fah:C (1.65337) BS01 ANA N/A GO:0007155 ... Q64823 39883726
    970200 9fah:C (1.65337) BS02 ZN N/A GO:0007155 ... Q64823 39883726

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).