SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    970401 9fba:A (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970402 9fba:B (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970403 9fba:C (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970404 9fba:D (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970405 9fba:E (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970406 9fba:F (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970407 9fbc:A (2.72) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970408 9fbc:B (2.72) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970409 9fbc:C (2.72) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970410 9fbc:D (2.72) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970411 9fbc:E (2.72) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970412 9fbc:F (2.72) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970413 9fbd:A (1.8) BS01 NAD N/A GO:0003824 ... Q72J81 39840824
    970414 9fbd:B (1.8) BS01 NAD N/A GO:0003824 ... Q72J81 39840824
    970415 9fbd:C (1.8) BS01 NAD N/A GO:0003824 ... Q72J81 39840824
    970416 9fbd:D (1.8) BS01 NAD N/A GO:0003824 ... Q72J81 39840824
    970417 9fbd:E (1.8) BS01 NAD N/A GO:0003824 ... Q72J81 39840824
    970418 9fbd:F (1.8) BS01 NAD N/A GO:0003824 ... Q72J81 39840824
    970419 9fbe:A (1.93) BS01 A1IBU N/A GO:0005886 ... Q8A5T1 N/A
    970420 9fbe:A (1.93) BS02 CA N/A GO:0005886 ... Q8A5T1 N/A
    970421 9fbe:B (1.93) BS01 A1IBU N/A GO:0005886 ... Q8A5T1 N/A
    970422 9fbe:B (1.93) BS02 CA N/A GO:0005886 ... Q8A5T1 N/A
    970423 9fbf:A (3.01) BS01 peptide N/A GO:0003677 ... Q9PTN2 38858308
    970424 9fbf:A (3.01) BS02 A1IBM N/A GO:0003677 ... Q9PTN2 38858308
    970425 9fbi:A (1.161) BS01 peptide N/A GO:0000785 ... P19784 N/A
    970426 9fbi:A (1.161) BS02 NIO N/A GO:0000785 ... P19784 N/A
    970427 9fbi:B (1.161) BS01 NIO N/A GO:0000785 ... P19784 N/A
    970428 9fbj:A (1.9) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970429 9fbj:B (1.9) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970430 9fbj:C (1.9) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970431 9fbj:D (1.9) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970432 9fbj:E (1.9) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970433 9fbj:F (1.9) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970434 9fbk:A (1.7) BS01 CA N/A GO:0009055 ... Q1PZE6 39675707
    970435 9fbk:A (1.7) BS02 CA N/A GO:0009055 ... Q1PZE6 39675707
    970436 9fbk:A (1.7) BS03 CA N/A GO:0009055 ... Q1PZE6 39675707
    970437 9fbk:A (1.7) BS04 HEC N/A GO:0009055 ... Q1PZE6 39675707
    970438 9fbk:A (1.7) BS05 HEC N/A GO:0009055 ... Q1PZE6 39675707
    970439 9fbl:A (2.18) BS01 peptide N/A GO:0004672 ... P68400 N/A
    970440 9fbl:A (2.18) BS02 NIO N/A GO:0004672 ... P68400 N/A
    970441 9fbl:B (2.18) BS01 peptide N/A GO:0004672 ... P68400 N/A
    970442 9fbl:B (2.18) BS02 NIO N/A GO:0004672 ... P68400 N/A
    970443 9fbl:C (2.18) BS01 peptide N/A GO:0004672 ... P68400 N/A
    970444 9fbl:C (2.18) BS02 NIO N/A GO:0004672 ... P68400 N/A
    970445 9fbm:A (2.054) BS01 peptide N/A GO:0004672 ... P68400 N/A
    970446 9fbm:A (2.054) BS02 NIO N/A GO:0004672 ... P68400 N/A
    970447 9fbm:B (2.054) BS01 peptide N/A GO:0004672 ... P68400 N/A
    970448 9fbm:B (2.054) BS02 NIO N/A GO:0004672 ... P68400 N/A
    970449 9fbm:C (2.054) BS01 peptide N/A GO:0004672 ... P68400 N/A
    970450 9fbm:C (2.054) BS02 NIO N/A GO:0004672 ... P68400 N/A
    970451 9fbn:A (1.8) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970452 9fbn:B (1.8) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970453 9fbn:C (1.8) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970454 9fbn:D (1.8) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970455 9fbn:E (1.8) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970456 9fbn:F (1.8) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970457 9fbr:A (1.743) BS01 CA N/A GO:0004553 ... B1VBB0 41456759
    970458 9fbs:A (2.354) BS01 CA N/A GO:0004553 ... B1VBB0 41456759
    970459 9fbt:A (1.07) BS01 A1H1U N/A GO:0005829 ... Q9F663 N/A
    970460 9fbt:A (1.07) BS02 A1IB7 N/A GO:0005829 ... Q9F663 N/A
    970461 9fbu:A (1.7) BS01 GLU N/A GO:0005576 ... A0A0H2UXX1 N/A
    970462 9fbv:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    970463 9fbv:1 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    970464 9fbv:2 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    970465 9fbv:3 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q6 38826346
    970466 9fbv:3 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    970467 9fbv:4 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    970468 9fbv:4 (2.4) BS02 rna N/A GO:0002181 ... P0A7M9 38826346
    970469 9fbv:4 (2.4) BS03 ZN N/A GO:0002181 ... P0A7M9 38826346
    970470 9fbv:B (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    970471 9fbv:C (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    970472 9fbv:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    970473 9fbv:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    970474 9fbv:F (2.4) BS01 rna N/A GO:0002181 ... P02358 38826346
    970475 9fbv:G (2.4) BS01 rna N/A GO:0000028 ... P02359 38826346
    970476 9fbv:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    970477 9fbv:I (2.4) BS01 rna N/A GO:0002181 ... P0A7X3 38826346
    970478 9fbv:I (2.4) BS02 rna N/A GO:0002181 ... P0A7X3 38826346
    970479 9fbv:J (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    970480 9fbv:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    970481 9fbv:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    970482 9fbv:M (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    970483 9fbv:M (2.4) BS02 rna N/A GO:0000049 ... P0A7S9 38826346
    970484 9fbv:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    970485 9fbv:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    970486 9fbv:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    970487 9fbv:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    970488 9fbv:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    970489 9fbv:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    970490 9fbv:S (2.4) BS01 rna N/A GO:0002181 ... P0A7U3 38826346
    970491 9fbv:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    970492 9fbv:U (2.4) BS01 rna N/A GO:0000028 ... P68679 38826346
    970493 9fbv:c (2.4) BS01 rna N/A GO:0000027 ... P60422 38826346
    970494 9fbv:c (2.4) BS02 rna N/A GO:0000027 ... P60422 38826346
    970495 9fbv:d (2.4) BS01 rna N/A GO:0000027 ... P60438 38826346
    970496 9fbv:e (2.4) BS01 rna N/A GO:0001070 ... P60723 38826346
    970497 9fbv:f (2.4) BS01 rna N/A GO:0000027 ... P62399 38826346
    970498 9fbv:f (2.4) BS02 rna N/A GO:0000027 ... P62399 38826346
    970499 9fbv:f (2.4) BS03 rna N/A GO:0000027 ... P62399 38826346
    970500 9fbv:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    970501 9fbv:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    970502 9fbv:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    970503 9fbv:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    970504 9fbv:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    970505 9fbv:k (2.4) BS01 rna N/A GO:0002181 ... P02413 38826346
    970506 9fbv:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    970507 9fbv:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    970508 9fbv:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    970509 9fbv:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 38826346
    970510 9fbv:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 38826346
    970511 9fbv:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    970512 9fbv:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    970513 9fbv:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    970514 9fbv:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    970515 9fbv:r (2.4) BS01 rna N/A GO:0002181 ... P61175 38826346
    970516 9fbv:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    970517 9fbv:t (2.4) BS01 rna N/A GO:0000027 ... P60624 38826346
    970518 9fbv:u (2.4) BS01 rna N/A GO:0000027 ... P68919 38826346
    970519 9fbv:u (2.4) BS02 rna N/A GO:0000027 ... P68919 38826346
    970520 9fbv:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    970521 9fbv:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    970522 9fbv:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    970523 9fbv:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    970524 9fbv:y (2.4) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    970525 9fbv:y (2.4) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    970526 9fbv:z (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    970527 9fbw:A (4.4) BS01 dna N/A GO:0000776 ... P61830 39226902
    970528 9fbw:A (4.4) BS02 dna N/A GO:0000776 ... P61830 39226902
    970529 9fbw:B (4.4) BS01 dna N/A GO:0000776 ... P61830 39226902
    970530 9fbw:B (4.4) BS02 dna N/A GO:0000776 ... P61830 39226902
    970531 9fbw:C (4.4) BS01 dna N/A GO:0000786 ... P02309 39226902
    970532 9fbw:C (4.4) BS02 dna N/A GO:0000786 ... P02309 39226902
    970533 9fbw:D (4.4) BS01 dna N/A GO:0000786 ... P02309 39226902
    970534 9fbw:D (4.4) BS02 dna N/A GO:0000786 ... P02309 39226902
    970535 9fbw:E (4.4) BS01 dna N/A GO:0000122 ... P04911 39226902
    970536 9fbw:E (4.4) BS02 dna N/A GO:0000122 ... P04911 39226902
    970537 9fbw:G (4.4) BS01 dna N/A GO:0000122 ... P02293 39226902
    970538 9fbw:G (4.4) BS02 dna N/A GO:0000122 ... P02293 39226902
    970539 9fbw:M (4.4) BS01 dna N/A GO:0000725 ... Q05471 39226902
    970540 9fbw:M (4.4) BS02 dna N/A GO:0000725 ... Q05471 39226902
    970541 9fbw:M (4.4) BS03 ADP N/A GO:0000725 ... Q05471 39226902
    970542 9fbw:M (4.4) BS04 BEF N/A GO:0000725 ... Q05471 39226902
    970543 9fbw:M (4.4) BS05 MG N/A GO:0000725 ... Q05471 39226902
    970544 9fbw:R (4.4) BS01 ADP N/A GO:0000785 ... Q12509 39226902
    970545 9fbw:R (4.4) BS02 BEF N/A GO:0000785 ... Q12509 39226902
    970546 9fbw:R (4.4) BS03 MG N/A GO:0000785 ... Q12509 39226902
    970547 9fbw:S (4.4) BS01 ZN N/A GO:0000785 ... Q03433 39226902
    970548 9fbw:S (4.4) BS02 ZN N/A GO:0000785 ... Q03433 39226902
    970549 9fbw:T (4.4) BS01 ADP N/A GO:0000492 ... Q03940 39226902
    970550 9fbw:U (4.4) BS01 MG N/A GO:0000492 ... Q12464 39226902
    970551 9fbw:U (4.4) BS02 ADP N/A GO:0000492 ... Q12464 39226902
    970552 9fbw:U (4.4) BS03 MG N/A GO:0000492 ... Q12464 39226902
    970553 9fbw:V (4.4) BS01 ADP N/A GO:0000492 ... Q03940 39226902
    970554 9fbw:V (4.4) BS02 MG N/A GO:0000492 ... Q03940 39226902
    970555 9fbw:W (4.4) BS01 ADP N/A GO:0000492 ... Q12464 39226902
    970556 9fbw:X (4.4) BS01 ADP N/A GO:0000492 ... Q03940 39226902
    970557 9fbw:X (4.4) BS02 MG N/A GO:0000492 ... Q03940 39226902
    970558 9fbw:Y (4.4) BS01 ADP N/A GO:0000492 ... Q12464 39226902
    970559 9fbw:Z (4.4) BS01 dna N/A GO:0000785 ... Q03388 39226902
    970560 9fbx:A (1.602) BS01 A1IBV N/A N/A P25440 38866424
    970561 9fby:A (1.853) BS01 A1IB5 N/A N/A O60885 38866424
    970562 9fbz:A (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970563 9fbz:B (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970564 9fbz:C (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970565 9fbz:D (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970566 9fbz:E (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970567 9fbz:F (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970568 9fc0:A (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970569 9fc0:B (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970570 9fc0:C (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970571 9fc0:D (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970572 9fc0:E (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970573 9fc0:F (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970574 9fc1:A (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970575 9fc1:B (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970576 9fc1:C (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970577 9fc1:D (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970578 9fc1:E (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970579 9fc1:F (1.96) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 N/A
    970580 9fcd:A (1.5) BS01 SAH N/A N/A A0A1W6R556 39121999
    970581 9fcd:A (1.5) BS02 CA N/A N/A A0A1W6R556 39121999
    970582 9fce:A (1.95) BS01 SAM N/A N/A A0A1W6R583 39121999
    970583 9fce:A (1.95) BS02 CA N/A N/A A0A1W6R583 39121999
    970584 9fce:A (1.95) BS03 BU3 N/A N/A A0A1W6R583 39121999
    970585 9fce:B (1.95) BS01 SAM N/A N/A A0A1W6R583 39121999
    970586 9fce:B (1.95) BS02 CA N/A N/A A0A1W6R583 39121999
    970587 9fcf:A (2.36) BS01 GUO N/A GO:0000105 ... G7IFI7 39186852
    970588 9fcf:A (2.36) BS02 NA N/A GO:0000105 ... G7IFI7 39186852
    970589 9fcg:A (1.54) BS01 2ER N/A GO:0000105 ... G7IFI7 39186852
    970590 9fcg:A (1.54) BS02 2ER N/A GO:0000105 ... G7IFI7 39186852
    970591 9fcg:A (1.54) BS03 NA N/A GO:0000105 ... G7IFI7 39186852
    970592 9fcg:A (1.54) BS04 NA N/A GO:0000105 ... G7IFI7 39186852
    970593 9fci:D (3.2) BS01 ZN N/A GO:0004197 ... O94782 39190802
    970594 9fci:D (3.2) BS02 A1IB8 N/A GO:0004197 ... O94782 39190802
    970595 9fcj:D (2.7) BS01 ZN N/A GO:0004197 ... O94782 39190802
    970596 9fcj:D (2.7) BS02 JDA N/A GO:0004197 ... O94782 39190802
    970597 9fcl:A (1.75) BS01 SAM N/A N/A A0A1W6R556 39121999
    970598 9fcl:A (1.75) BS02 CA N/A N/A A0A1W6R556 39121999
    970599 9fcn:A (2.25) BS01 FMN N/A GO:0010181 ... I3V5V6
    Q9FEW9
    41848427
    970600 9fcn:A (2.25) BS02 TXP N/A GO:0010181 ... I3V5V6
    Q9FEW9
    41848427

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).