SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    970601 9fcn:B (2.25) BS01 FMN N/A GO:0010181 ... I3V5V6
    Q9FEW9
    41848427
    970602 9fcn:B (2.25) BS02 TXP N/A GO:0010181 ... I3V5V6
    Q9FEW9
    41848427
    970603 9fco:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 40075065
    970604 9fco:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 40075065
    970605 9fco:F (2.4) BS01 rna N/A GO:0002181 ... P02358 40075065
    970606 9fco:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 40075065
    970607 9fco:I (2.4) BS01 rna N/A GO:0003676 ... P69222 40075065
    970608 9fco:J (2.4) BS01 rna N/A GO:0003743 ... P0A707 40075065
    970609 9fco:J (2.4) BS02 rna N/A GO:0003743 ... P0A707 40075065
    970610 9fco:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 40075065
    970611 9fco:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 40075065
    970612 9fco:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 40075065
    970613 9fco:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 40075065
    970614 9fco:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 40075065
    970615 9fco:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 40075065
    970616 9fco:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 40075065
    970617 9fco:U (2.4) BS01 rna N/A GO:0000028 ... P68679 40075065
    970618 9fcp:A (2.0) BS01 FMN N/A GO:0010181 ... I3V5V6
    Q9FEW9
    41848427
    970619 9fcp:A (2.0) BS02 WI6 N/A GO:0010181 ... I3V5V6
    Q9FEW9
    41848427
    970620 9fcp:B (2.0) BS01 FMN N/A GO:0010181 ... I3V5V6
    Q9FEW9
    41848427
    970621 9fcp:B (2.0) BS02 WI6 N/A GO:0010181 ... I3V5V6
    Q9FEW9
    41848427
    970622 9fcq:A (1.4) BS01 SAH N/A N/A A0A1W6R556 39121999
    970623 9fcq:A (1.4) BS02 CA N/A N/A A0A1W6R556 39121999
    970624 9fcs:A (1.6) BS01 SAH N/A N/A A0A1W6R556 39121999
    970625 9fcs:B (1.6) BS01 SAH N/A N/A A0A1W6R556 39121999
    970626 9fct:A (1.603) BS01 CNC N/A N/A Q8A7N3 41091075
    970627 9fct:B (1.603) BS01 CNC N/A N/A Q8A7N3 41091075
    970628 9fcu:A (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    970629 9fcu:B (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    970630 9fcu:C (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    970631 9fcu:D (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    970632 9fcv:A (3.09) BS01 rna N/A N/A E6K398 39965569
    970633 9fcx:A (1.8) BS01 SAH N/A N/A A0A1W6R556 39121999
    970634 9fcx:B (1.8) BS01 SAH N/A N/A A0A1W6R556 39121999
    970635 9fcy:A (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    970636 9fcy:A (1.85) BS02 CA N/A N/A A0A1W6R556 39121999
    970637 9fcy:B (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    970638 9fcy:B (1.85) BS02 CA N/A N/A A0A1W6R556 39121999
    970639 9fcy:C (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    970640 9fcy:C (1.85) BS02 CA N/A N/A A0A1W6R556 39121999
    970641 9fcy:D (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    970642 9fcy:D (1.85) BS02 CA N/A N/A A0A1W6R556 39121999
    970643 9fcz:A (2.53) BS01 A1IB2 N/A GO:0005198 ... P21404 39292620
    970644 9fd2:A (3.4) BS01 dna N/A GO:0001172 ... A0A8D1DPV6 39547223
    970645 9fd2:A (3.4) BS02 rna N/A GO:0001172 ... A0A8D1DPV6 39547223
    970646 9fd2:A (3.4) BS03 dna N/A GO:0001172 ... A0A8D1DPV6 39547223
    970647 9fd2:A (3.4) BS04 ZN N/A GO:0001172 ... A0A8D1DPV6 39547223
    970648 9fd2:A (3.4) BS05 ZN N/A GO:0001172 ... A0A8D1DPV6 39547223
    970649 9fd2:A (3.4) BS06 MG N/A GO:0001172 ... A0A8D1DPV6 39547223
    970650 9fd2:B (3.4) BS01 dna N/A GO:0000781 ... I3LGP4 39547223
    970651 9fd2:B (3.4) BS02 rna N/A GO:0000781 ... I3LGP4 39547223
    970652 9fd2:B (3.4) BS03 dna N/A GO:0000781 ... I3LGP4 39547223
    970653 9fd2:B (3.4) BS04 ZN N/A GO:0000781 ... I3LGP4 39547223
    970654 9fd2:C (3.4) BS01 ZN N/A GO:0003677 ... I3LCH3 39547223
    970655 9fd2:E (3.4) BS01 dna N/A GO:0003677 ... I3LSI7 39547223
    970656 9fd2:I (3.4) BS01 ZN N/A GO:0001193 ... P60899 39547223
    970657 9fd2:I (3.4) BS02 ZN N/A GO:0001193 ... P60899 39547223
    970658 9fd2:J (3.4) BS01 ZN N/A GO:0003677 ... A0A8W4F9W9 39547223
    970659 9fd2:L (3.4) BS01 ZN N/A GO:0001650 ... A0A4X1TRS6 39547223
    970660 9fd2:d (3.4) BS01 dna N/A GO:0000993 ... Q2YD98 39547223
    970661 9fd2:d (3.4) BS02 ZN N/A GO:0000993 ... Q2YD98 39547223
    970662 9fd2:e (3.4) BS01 dna N/A GO:0000012 ... Q03468 39547223
    970663 9fd2:e (3.4) BS02 dna N/A GO:0000012 ... Q03468 39547223
    970664 9fd2:f (3.4) BS01 ZN N/A GO:0000993 ... P60002 39547223
    970665 9fd2:g (3.4) BS01 dna N/A GO:0003690 ... P49842 39547223
    970666 9fd3:A (1.4) BS01 SAH N/A N/A A0A1W6R556 39121999
    970667 9fd3:A (1.4) BS02 CA N/A N/A A0A1W6R556 39121999
    970668 9fd4:A (1.14) BS01 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970669 9fd4:A (1.14) BS02 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970670 9fd4:A (1.14) BS03 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970671 9fd4:B (1.14) BS01 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970672 9fd4:B (1.14) BS02 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970673 9fd4:B (1.14) BS03 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970674 9fd4:C (1.14) BS01 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970675 9fd4:C (1.14) BS02 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970676 9fd4:C (1.14) BS03 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970677 9fd4:C (1.14) BS04 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970678 9fd4:D (1.14) BS01 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970679 9fd4:D (1.14) BS02 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970680 9fd4:D (1.14) BS03 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970681 9fd5:A (1.31) BS01 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970682 9fd5:A (1.31) BS02 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970683 9fd5:A (1.31) BS03 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970684 9fd5:B (1.31) BS01 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970685 9fd5:B (1.31) BS02 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970686 9fd5:B (1.31) BS03 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970687 9fd5:C (1.31) BS01 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970688 9fd5:C (1.31) BS02 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970689 9fd5:C (1.31) BS03 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970690 9fd5:D (1.31) BS01 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970691 9fd5:D (1.31) BS02 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970692 9fd5:D (1.31) BS03 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970693 9fd6:A (1.43) BS01 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970694 9fd6:A (1.43) BS02 NAI N/A GO:0010181 ... A0A1B1V585 39725031
    970695 9fd6:A (1.43) BS03 NAI N/A GO:0010181 ... A0A1B1V585 39725031
    970696 9fd6:B (1.43) BS01 NAI N/A GO:0010181 ... A0A1B1V585 39725031
    970697 9fd6:B (1.43) BS02 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970698 9fd6:B (1.43) BS03 NAI N/A GO:0010181 ... A0A1B1V585 39725031
    970699 9fd6:C (1.43) BS01 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970700 9fd6:C (1.43) BS02 NAI N/A GO:0010181 ... A0A1B1V585 39725031
    970701 9fd6:C (1.43) BS03 NAI N/A GO:0010181 ... A0A1B1V585 39725031
    970702 9fd6:D (1.43) BS01 NAI N/A GO:0010181 ... A0A1B1V585 39725031
    970703 9fd6:D (1.43) BS02 FAD N/A GO:0010181 ... A0A1B1V585 39725031
    970704 9fd6:D (1.43) BS03 NAI N/A GO:0010181 ... A0A1B1V585 39725031
    970705 9fd8:A (1.58) BS01 A1ICA N/A GO:0004139 ... P0A6L0 39993220
    970706 9fd8:B (1.58) BS01 A1ICA N/A GO:0004139 ... P0A6L0 39993220
    970707 9fd9:A (1.52) BS01 A1IB9 N/A GO:0004139 ... P0A6L0 39993220
    970708 9fd9:B (1.52) BS01 A1IB9 N/A GO:0004139 ... P0A6L0 39993220
    970709 9fda:D (2.0) BS01 rna N/A GO:0000028 ... P0A7V8 40075065
    970710 9fda:E (2.0) BS01 rna N/A GO:0000028 ... P0A7W1 40075065
    970711 9fda:F (2.0) BS01 rna N/A GO:0002181 ... P02358 40075065
    970712 9fda:H (2.0) BS01 rna N/A GO:0000028 ... P0A7W7 40075065
    970713 9fda:I (2.0) BS01 rna N/A GO:0003676 ... P69222 40075065
    970714 9fda:J (2.0) BS01 rna N/A GO:0003743 ... P0A707 40075065
    970715 9fda:K (2.0) BS01 rna N/A GO:0002181 ... P0A7R9 40075065
    970716 9fda:L (2.0) BS01 rna N/A GO:0000049 ... P0A7S3 40075065
    970717 9fda:O (2.0) BS01 rna N/A GO:0000028 ... P0ADZ4 40075065
    970718 9fda:P (2.0) BS01 rna N/A GO:0000028 ... P0A7T3 40075065
    970719 9fda:Q (2.0) BS01 rna N/A GO:0000028 ... P0AG63 40075065
    970720 9fda:R (2.0) BS01 rna N/A GO:0002181 ... P0A7T7 40075065
    970721 9fda:T (2.0) BS01 rna N/A GO:0000028 ... P0A7U7 40075065
    970722 9fda:U (2.0) BS01 rna N/A GO:0000028 ... P68679 40075065
    970723 9fdb:A (1.45) BS01 A1IB3 N/A GO:0030246 ... P17931 40071533
    970724 9fdc:A (1.78) BS01 A1IB4 N/A GO:0030246 ... P17931 40071533
    970725 9fdd:A (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    970726 9fdd:B (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    970727 9fdd:C (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    970728 9fdd:D (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    970729 9fdd:E (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    970730 9fdd:F (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    970731 9fdd:G (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    970732 9fdd:H (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    970733 9fde:B (1.999) BS01 LYS N/A GO:0004806 ... P41365 N/A
    970734 9fdf:A (1.44) BS01 ATP N/A GO:0004618 ... P00558 N/A
    970735 9fdf:A (1.44) BS02 X15 N/A GO:0004618 ... P00558 N/A
    970736 9fdh:A (1.756) BS01 ADP N/A GO:0004618 ... P00558 N/A
    970737 9fdh:A (1.756) BS02 X15 N/A GO:0004618 ... P00558 N/A
    970738 9fdi:A (1.41) BS01 A1IB1 N/A GO:0004348 ... P04062 38932616
    970739 9fdi:A (1.41) BS02 A1IB1 N/A GO:0004348 ... P04062 38932616
    970740 9fdj:A (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    970741 9fdj:B (1.7) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970742 9fdj:B (1.7) BS02 FMN N/A GO:0008137 ... O66841 38960077
    970743 9fdj:B (1.7) BS03 NAI N/A GO:0008137 ... O66841 38960077
    970744 9fdj:C (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    970745 9fdj:D (1.7) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970746 9fdj:D (1.7) BS02 FMN N/A GO:0008137 ... O66841 38960077
    970747 9fdj:D (1.7) BS03 NAI N/A GO:0008137 ... O66841 38960077
    970748 9fdk:A (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    970749 9fdk:B (1.8) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970750 9fdk:B (1.8) BS02 FMN N/A GO:0008137 ... O66841 38960077
    970751 9fdk:C (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    970752 9fdk:D (1.8) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970753 9fdk:D (1.8) BS02 FMN N/A GO:0008137 ... O66841 38960077
    970754 9fdl:A (2.33) BS01 CU N/A N/A G2Q9F7 39662565
    970755 9fdl:B (2.33) BS01 CU N/A N/A G2Q9F7 39662565
    970756 9fdl:C (2.33) BS01 CU N/A N/A G2Q9F7 39662565
    970757 9fdn:A (1.58) BS01 ATP N/A GO:0004618 ... P00558 N/A
    970758 9fdo:A (2.055) BS01 BTN N/A N/A B5L013 N/A
    970759 9fdr:A (1.25) BS01 ZN N/A GO:0017136 ... Q8IXJ6 40390200
    970760 9fds:A (1.4) BS01 ZN N/A GO:0017136 ... Q8IXJ6 40390200
    970761 9fds:A (1.4) BS02 3TE N/A GO:0017136 ... Q8IXJ6 40390200
    970762 9fdt:A (1.6) BS01 ZN N/A GO:0017136 ... Q8IXJ6 40390200
    970763 9fdt:A (1.6) BS02 A1IBW N/A GO:0017136 ... Q8IXJ6 40390200
    970764 9fdu:A (1.55) BS01 ZN N/A GO:0017136 ... Q8IXJ6 40390200
    970765 9fdu:A (1.55) BS02 A1IBX N/A GO:0017136 ... Q8IXJ6 40390200
    970766 9fdv:A (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    970767 9fdv:B (1.986) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970768 9fdv:B (1.986) BS02 FNR N/A GO:0008137 ... O66841 38960077
    970769 9fdv:C (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    970770 9fdv:D (1.986) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970771 9fdv:D (1.986) BS02 FNR N/A GO:0008137 ... O66841 38960077
    970772 9fdw:A (1.6) BS01 A1IBY N/A GO:0017136 ... Q8IXJ6 40390200
    970773 9fdw:A (1.6) BS02 A1IBY N/A GO:0017136 ... Q8IXJ6 40390200
    970774 9fdw:A (1.6) BS03 ZN N/A GO:0017136 ... Q8IXJ6 40390200
    970775 9fdx:A (1.55) BS01 ZN N/A GO:0017136 ... Q8IXJ6 40390200
    970776 9fdx:A (1.55) BS02 A1IBZ N/A GO:0017136 ... Q8IXJ6 40390200
    970777 9fe0:A (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    970778 9fe0:B (2.2) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970779 9fe0:B (2.2) BS02 FNR N/A GO:0008137 ... O66841 38960077
    970780 9fe0:B (2.2) BS03 NAD N/A GO:0008137 ... O66841 38960077
    970781 9fe0:C (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    970782 9fe0:D (2.2) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970783 9fe0:D (2.2) BS02 FNR N/A GO:0008137 ... O66841 38960077
    970784 9fe0:D (2.2) BS03 NAD N/A GO:0008137 ... O66841 38960077
    970785 9fe1:A (3.1) BS01 peptide N/A GO:0000139 ... Q8WLS4 41321628
    970786 9fe1:D (3.1) BS01 peptide N/A N/A N/A 41321628
    970787 9fe2:A (1.89) BS01 MIY N/A GO:0005515 ... P31224 41298458
    970788 9fe5:A (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    970789 9fe5:B (2.1) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970790 9fe5:B (2.1) BS02 FNR N/A GO:0008137 ... O66841 38960077
    970791 9fe5:B (2.1) BS03 NAI N/A GO:0008137 ... O66841 38960077
    970792 9fe5:C (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    970793 9fe5:D (2.1) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970794 9fe5:D (2.1) BS02 FNR N/A GO:0008137 ... O66841 38960077
    970795 9fe5:D (2.1) BS03 NAI N/A GO:0008137 ... O66841 38960077
    970796 9fe6:B (1.875) BS01 peptide N/A GO:0006629 ... A0A7C5VFX3 N/A
    970797 9fe7:A (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    970798 9fe7:B (2.28) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    970799 9fe7:B (2.28) BS02 FMN N/A GO:0008137 ... O66841 38960077
    970800 9fe7:C (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).