SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    972201 9fnz:BC (3.2) BS01 rna N/A GO:0003676 ... Q8U004 39797736
    972202 9fnz:BD (3.2) BS01 rna N/A GO:0003735 ... Q8TZE1 39797736
    972203 9fnz:BE (3.2) BS01 rna N/A GO:0003723 ... P61993 39797736
    972204 9fnz:BF (3.2) BS01 rna N/A GO:0003723 ... Q8U011 39797736
    972205 9fnz:BG (3.2) BS01 rna N/A GO:0003723 ... Q8U017 39797736
    972206 9fnz:BH (3.2) BS01 rna N/A GO:0003735 ... Q8U3H8 39797736
    972207 9fnz:BI (3.2) BS01 rna N/A GO:0003735 ... Q8U0M8 39797736
    972208 9fnz:BJ (3.2) BS01 rna N/A GO:0003735 ... Q8U014 39797736
    972209 9fnz:BK (3.2) BS01 rna N/A GO:0003735 ... Q8U1Y5 39797736
    972210 9fnz:BL (3.2) BS01 rna N/A GO:0000462 ... Q8U0E7 39797736
    972211 9fnz:BM (3.2) BS01 rna N/A GO:0000049 ... P61885 39797736
    972212 9fnz:BN (3.2) BS01 rna N/A GO:0003735 ... Q8U0E3 39797736
    972213 9fnz:BO (3.2) BS01 rna N/A GO:0003735 ... P61995 39797736
    972214 9fnz:BP (3.2) BS01 rna N/A GO:0003676 ... Q8U0E2 39797736
    972215 9fnz:BQ (3.2) BS01 rna N/A GO:0002181 ... Q8U013 39797736
    972216 9fnz:BR (3.2) BS01 rna N/A GO:0003735 ... Q8TZD9 39797736
    972217 9fnz:BS (3.2) BS01 rna N/A GO:0003735 ... Q8U008 39797736
    972218 9fnz:BT (3.2) BS01 rna N/A GO:0003735 ... Q8U0U1 39797736
    972219 9fnz:BU (3.2) BS01 rna N/A GO:0000028 ... Q8U002 39797736
    972220 9fnz:BV (3.2) BS01 rna N/A GO:0000028 ... Q8U0T4 39797736
    972221 9fnz:BW (3.2) BS01 rna N/A GO:0003735 ... Q8U442 39797736
    972222 9fnz:BX (3.2) BS01 rna N/A GO:0003735 ... Q8U443 39797736
    972223 9fnz:BY (3.2) BS01 rna N/A GO:0003735 ... Q8U474 39797736
    972224 9fnz:BZ (3.2) BS01 rna N/A GO:0000028 ... Q8U159 39797736
    972225 9fo0:A2 (3.4) BS01 rna N/A N/A Q8U232 39797736
    972226 9fo0:A5 (3.4) BS01 rna N/A GO:0001682 ... Q8U160 39797736
    972227 9fo0:AB (3.4) BS01 rna N/A GO:0003735 ... Q8U0F0 39797736
    972228 9fo0:AC (3.4) BS01 rna N/A GO:0003676 ... Q8U004 39797736
    972229 9fo0:AD (3.4) BS01 rna N/A GO:0003735 ... Q8TZE1 39797736
    972230 9fo0:AE (3.4) BS01 rna N/A GO:0003723 ... P61993 39797736
    972231 9fo0:AF (3.4) BS01 rna N/A GO:0003723 ... Q8U011 39797736
    972232 9fo0:AG (3.4) BS01 rna N/A GO:0003723 ... Q8U017 39797736
    972233 9fo0:AH (3.4) BS01 rna N/A GO:0003735 ... Q8U3H8 39797736
    972234 9fo0:AI (3.4) BS01 rna N/A GO:0003735 ... Q8U0M8 39797736
    972235 9fo0:AJ (3.4) BS01 rna N/A GO:0003735 ... Q8U014 39797736
    972236 9fo0:AK (3.4) BS01 rna N/A GO:0003735 ... Q8U1Y5 39797736
    972237 9fo0:AL (3.4) BS01 rna N/A GO:0000462 ... Q8U0E7 39797736
    972238 9fo0:AM (3.4) BS01 rna N/A GO:0000049 ... P61885 39797736
    972239 9fo0:AN (3.4) BS01 rna N/A GO:0003735 ... Q8U0E3 39797736
    972240 9fo0:AO (3.4) BS01 rna N/A GO:0003735 ... P61995 39797736
    972241 9fo0:AP (3.4) BS01 rna N/A GO:0003676 ... Q8U0E2 39797736
    972242 9fo0:AQ (3.4) BS01 rna N/A GO:0002181 ... Q8U013 39797736
    972243 9fo0:AR (3.4) BS01 rna N/A GO:0003735 ... Q8TZD9 39797736
    972244 9fo0:AS (3.4) BS01 rna N/A GO:0003735 ... Q8U008 39797736
    972245 9fo0:AT (3.4) BS01 rna N/A GO:0003735 ... Q8U0U1 39797736
    972246 9fo0:AU (3.4) BS01 rna N/A GO:0000028 ... Q8U002 39797736
    972247 9fo0:AV (3.4) BS01 rna N/A GO:0000028 ... Q8U0T4 39797736
    972248 9fo0:AW (3.4) BS01 rna N/A GO:0003735 ... Q8U442 39797736
    972249 9fo0:AX (3.4) BS01 rna N/A GO:0003735 ... Q8U443 39797736
    972250 9fo0:AY (3.4) BS01 rna N/A GO:0003735 ... Q8U474 39797736
    972251 9fo0:AZ (3.4) BS01 rna N/A GO:0000028 ... Q8U159 39797736
    972252 9fo1:A (3.11) BS01 CA N/A N/A N/A 39797788
    972253 9fo1:A (3.11) BS02 CA N/A N/A N/A 39797788
    972254 9fo2:A (2.58) BS01 A1IEI N/A GO:0005198 ... P21404 39292620
    972255 9fo4:A (2.47) BS01 RQM N/A GO:0003824 ... P27989 40727002
    972256 9fo4:A (2.47) BS02 SF4 N/A GO:0003824 ... P27989 40727002
    972257 9fo4:A (2.47) BS03 SF4 N/A GO:0003824 ... P27989 40727002
    972258 9fo4:B (2.47) BS01 RQM N/A GO:0003824 ... P27989 40727002
    972259 9fo4:B (2.47) BS02 SF4 N/A GO:0003824 ... P27989 40727002
    972260 9fo4:B (2.47) BS03 SF4 N/A GO:0003824 ... P27989 40727002
    972261 9fo4:C (2.47) BS01 SF4 N/A GO:0003824 ... Q3ACS4 40727002
    972262 9fo4:C (2.47) BS02 NI N/A GO:0003824 ... Q3ACS4 40727002
    972263 9fo4:C (2.47) BS03 74C N/A GO:0003824 ... Q3ACS4 40727002
    972264 9fo5:A (2.69) BS01 A1IEH N/A GO:0005198 ... P21404 39292620
    972265 9fo6:C (2.76) BS01 dna N/A GO:0003677 ... Q8RQE9 41513851
    972266 9fo6:C (2.76) BS02 dna N/A GO:0003677 ... Q8RQE9 41513851
    972267 9fo6:C (2.76) BS03 GTP N/A GO:0003677 ... Q8RQE9 41513851
    972268 9fo6:D (2.76) BS01 dna N/A GO:0000287 ... Q8RQE8 41513851
    972269 9fo6:D (2.76) BS02 dna N/A GO:0000287 ... Q8RQE8 41513851
    972270 9fo6:D (2.76) BS03 ZN N/A GO:0000287 ... Q8RQE8 41513851
    972271 9fo6:D (2.76) BS04 ZN N/A GO:0000287 ... Q8RQE8 41513851
    972272 9fo6:D (2.76) BS05 MG N/A GO:0000287 ... Q8RQE8 41513851
    972273 9fo6:D (2.76) BS06 GTP N/A GO:0000287 ... Q8RQE8 41513851
    972274 9fo6:D (2.76) BS07 2TM N/A GO:0000287 ... Q8RQE8 41513851
    972275 9fo6:D (2.76) BS08 2TM N/A GO:0000287 ... Q8RQE8 41513851
    972276 9fo6:F (2.76) BS01 dna N/A GO:0003677 ... Q72L95 41513851
    972277 9fo6:F (2.76) BS02 dna N/A GO:0003677 ... Q72L95 41513851
    972278 9fo7:E (2.85) BS01 C2E N/A GO:0035438 ... P37657 39394223
    972279 9fo7:E (2.85) BS02 C2E N/A GO:0035438 ... P37657 39394223
    972280 9fo7:U (2.85) BS01 C2E N/A GO:0035438 ... P37657 39394223
    972281 9fo7:U (2.85) BS02 C2E N/A GO:0035438 ... P37657 39394223
    972282 9foa:D (1.36) BS01 A1ID2 N/A GO:0005576 ... P22629 39760306
    972283 9fob:A (2.6) BS01 NAP N/A GO:0004365 ... O25902 N/A
    972284 9fob:B (2.6) BS01 NAP N/A GO:0004365 ... O25902 N/A
    972285 9fob:C (2.6) BS01 NAP N/A GO:0004365 ... O25902 N/A
    972286 9fob:D (2.6) BS01 NAP N/A GO:0004365 ... O25902 N/A
    972287 9foc:A (1.618) BS01 A1IFS N/A N/A O96028 40959233
    972288 9foc:A (1.618) BS02 A1IEG N/A N/A O96028 40959233
    972289 9foc:B (1.618) BS01 A1IEG N/A N/A O96028 40959233
    972290 9foc:B (1.618) BS02 A1IFS N/A N/A O96028 40959233
    972291 9foe:A (1.963) BS01 A1IEF N/A N/A O96028 40959233
    972292 9fog:C (2.51) BS01 dna N/A GO:0003677 ... Q8RQE9 41513851
    972293 9fog:C (2.51) BS02 dna N/A GO:0003677 ... Q8RQE9 41513851
    972294 9fog:C (2.51) BS03 2TM N/A GO:0003677 ... Q8RQE9 41513851
    972295 9fog:D (2.51) BS01 dna N/A GO:0000287 ... Q8RQE8 41513851
    972296 9fog:D (2.51) BS02 dna N/A GO:0000287 ... Q8RQE8 41513851
    972297 9fog:D (2.51) BS03 ZN N/A GO:0000287 ... Q8RQE8 41513851
    972298 9fog:D (2.51) BS04 ZN N/A GO:0000287 ... Q8RQE8 41513851
    972299 9fog:D (2.51) BS05 MG N/A GO:0000287 ... Q8RQE8 41513851
    972300 9fog:D (2.51) BS06 2TM N/A GO:0000287 ... Q8RQE8 41513851
    972301 9fog:D (2.51) BS07 G3A N/A GO:0000287 ... Q8RQE8 41513851
    972302 9fog:D (2.51) BS08 2TM N/A GO:0000287 ... Q8RQE8 41513851
    972303 9fog:F (2.51) BS01 dna N/A GO:0003677 ... Q72L95 41513851
    972304 9fog:F (2.51) BS02 dna N/A GO:0003677 ... Q72L95 41513851
    972305 9foh:A (1.6) BS01 A1IEE N/A GO:0004833 ... P14902 41501556
    972306 9foi:A (2.71) BS01 NA N/A GO:0003714 ... Q719H9 39191250
    972307 9foj:A (3.82) BS01 CPL N/A GO:0046983 ... P29837 40827915
    972308 9foj:A (3.82) BS02 CPL N/A GO:0046983 ... P29837 40827915
    972309 9foj:B (3.82) BS01 CPL N/A GO:0046983 ... P29837 40827915
    972310 9foj:B (3.82) BS02 CPL N/A GO:0046983 ... P29837 40827915
    972311 9foj:C (3.82) BS01 CPL N/A GO:0046983 ... P29837 40827915
    972312 9foj:D (3.82) BS01 CPL N/A GO:0019058 ... P29837 40827915
    972313 9fok:C (3.0) BS01 dna N/A GO:0003677 ... Q8RQE9 41513851
    972314 9fok:C (3.0) BS02 dna N/A GO:0003677 ... Q8RQE9 41513851
    972315 9fok:C (3.0) BS03 2TM N/A GO:0003677 ... Q8RQE9 41513851
    972316 9fok:C (3.0) BS04 A1IF9 N/A GO:0003677 ... Q8RQE9 41513851
    972317 9fok:D (3.0) BS01 dna N/A GO:0000287 ... Q8RQE8 41513851
    972318 9fok:D (3.0) BS02 dna N/A GO:0000287 ... Q8RQE8 41513851
    972319 9fok:D (3.0) BS03 ZN N/A GO:0000287 ... Q8RQE8 41513851
    972320 9fok:D (3.0) BS04 ZN N/A GO:0000287 ... Q8RQE8 41513851
    972321 9fok:D (3.0) BS05 MG N/A GO:0000287 ... Q8RQE8 41513851
    972322 9fok:D (3.0) BS06 2TM N/A GO:0000287 ... Q8RQE8 41513851
    972323 9fok:D (3.0) BS07 2TM N/A GO:0000287 ... Q8RQE8 41513851
    972324 9fok:D (3.0) BS08 A1IF9 N/A GO:0000287 ... Q8RQE8 41513851
    972325 9fok:F (3.0) BS01 dna N/A GO:0003677 ... Q72L95 41513851
    972326 9fok:F (3.0) BS02 dna N/A GO:0003677 ... Q72L95 41513851
    972327 9fol:B (1.8) BS01 COA N/A GO:0008410 ... Q5P688 N/A
    972328 9fol:D (1.8) BS01 COA N/A GO:0008410 ... Q5P688 N/A
    972329 9fom:A (1.16) BS01 CU N/A GO:0005507 ... B2UHR8 N/A
    972330 9fom:A (1.16) BS02 CU N/A GO:0005507 ... B2UHR8 N/A
    972331 9fom:A (1.16) BS03 HEC N/A GO:0005507 ... B2UHR8 N/A
    972332 9fon:A (2.121) BS01 HEM N/A GO:0004833 ... P20351 41002114
    972333 9fon:A (2.121) BS02 A1IER N/A GO:0004833 ... P20351 41002114
    972334 9fon:B (2.121) BS01 HEM N/A GO:0004833 ... P20351 41002114
    972335 9fon:B (2.121) BS02 A1IER N/A GO:0004833 ... P20351 41002114
    972336 9fop:A (2.33) BS01 RQM N/A GO:0003824 ... P27989 40727002
    972337 9fop:A (2.33) BS02 SF4 N/A GO:0003824 ... P27989 40727002
    972338 9fop:A (2.33) BS03 SF4 N/A GO:0003824 ... P27989 40727002
    972339 9fop:B (2.33) BS01 SF4 N/A GO:0003824 ... P27989 40727002
    972340 9fop:B (2.33) BS02 RQM N/A GO:0003824 ... P27989 40727002
    972341 9fop:B (2.33) BS03 SF4 N/A GO:0003824 ... P27989 40727002
    972342 9fop:C (2.33) BS01 SF4 N/A GO:0003824 ... P27988 40727002
    972343 9fop:C (2.33) BS02 NI N/A GO:0003824 ... P27988 40727002
    972344 9fos:A (3.301) BS01 DMO N/A GO:0003824 ... E9AGB5 N/A
    972345 9fot:A (3.0) BS01 A1IET N/A GO:0005515 ... P36021 40368961
    972346 9fow:B (1.878) BS01 FUC N/A N/A Q8BPS4 39609618
    972347 9fow:B (1.878) BS02 FUC N/A N/A Q8BPS4 39609618
    972348 9fow:C (1.878) BS01 FUC N/A N/A Q8BPS4 39609618
    972349 9fow:C (1.878) BS02 FUC N/A N/A Q8BPS4 39609618
    972350 9fox:A (2.31) BS01 RQM N/A GO:0003824 ... P27989 40727002
    972351 9fox:A (2.31) BS02 SF4 N/A GO:0003824 ... P27989 40727002
    972352 9fox:A (2.31) BS03 SF4 N/A GO:0003824 ... P27989 40727002
    972353 9fox:B (2.31) BS01 RQM N/A GO:0003824 ... P27989 40727002
    972354 9fox:B (2.31) BS02 SF4 N/A GO:0003824 ... P27989 40727002
    972355 9fox:B (2.31) BS03 SF4 N/A GO:0003824 ... P27989 40727002
    972356 9fox:C (2.31) BS01 SF4 N/A GO:0003824 ... P27988 40727002
    972357 9fox:C (2.31) BS02 NI N/A GO:0003824 ... P27988 40727002
    972358 9foy:A (2.8) BS01 dna N/A GO:0003677 ... P9WG45
    P9WG47
    39691510
    972359 9foy:A (2.8) BS02 dna N/A GO:0003677 ... P9WG45
    P9WG47
    39691510
    972360 9foy:A (2.8) BS03 dna N/A GO:0003677 ... P9WG45
    P9WG47
    39691510
    972361 9foy:A (2.8) BS04 A1ID8 N/A GO:0003677 ... P9WG45
    P9WG47
    39691510
    972362 9foy:A (2.8) BS05 A1ID9 N/A GO:0003677 ... P9WG45
    P9WG47
    39691510
    972363 9foy:B (2.8) BS01 dna N/A GO:0003677 ... P9WG45
    P9WG47
    39691510
    972364 9foy:B (2.8) BS02 dna N/A GO:0003677 ... P9WG45
    P9WG47
    39691510
    972365 9foy:B (2.8) BS03 dna N/A GO:0003677 ... P9WG45
    P9WG47
    39691510
    972366 9foy:B (2.8) BS04 A1ID8 N/A GO:0003677 ... P9WG45
    P9WG47
    39691510
    972367 9foy:B (2.8) BS05 A1ID9 N/A GO:0003677 ... P9WG45
    P9WG47
    39691510
    972368 9foz:A (1.694) BS01 HEM N/A GO:0004833 ... P14902 41002114
    972369 9foz:A (1.694) BS02 A1H93 N/A GO:0004833 ... P14902 41002114
    972370 9foz:B (1.694) BS01 HEM N/A GO:0004833 ... P14902 41002114
    972371 9foz:B (1.694) BS02 A1H93 N/A GO:0004833 ... P14902 41002114
    972372 9fp0:D (3.37) BS01 C2E N/A GO:0035438 ... P37657 39394223
    972373 9fp0:D (3.37) BS02 C2E N/A GO:0035438 ... P37657 39394223
    972374 9fp0:E (3.37) BS01 C2E N/A GO:0035438 ... P37657 39394223
    972375 9fp0:E (3.37) BS02 C2E N/A GO:0035438 ... P37657 39394223
    972376 9fp0:Q (3.37) BS01 peptide N/A GO:0005737 ... P0DP92 39394223
    972377 9fp0:Q (3.37) BS02 ATP N/A GO:0005737 ... P0DP92 39394223
    972378 9fp0:Q (3.37) BS03 MG N/A GO:0005737 ... P0DP92 39394223
    972379 9fp0:Q (3.37) BS04 ATP N/A GO:0005737 ... P0DP92 39394223
    972380 9fp0:W (3.37) BS01 peptide N/A GO:0005737 ... P0DP92 39394223
    972381 9fp0:W (3.37) BS02 ATP N/A GO:0005737 ... P0DP92 39394223
    972382 9fp0:W (3.37) BS03 ATP N/A GO:0005737 ... P0DP92 39394223
    972383 9fp2:D (3.76) BS01 C2E N/A GO:0035438 ... P37657 39394223
    972384 9fp2:D (3.76) BS02 C2E N/A GO:0035438 ... P37657 39394223
    972385 9fp2:E (3.76) BS01 C2E N/A GO:0035438 ... P37657 39394223
    972386 9fp2:E (3.76) BS02 C2E N/A GO:0035438 ... P37657 39394223
    972387 9fp2:Q (3.76) BS01 peptide N/A GO:0005737 ... P0DP92 39394223
    972388 9fp2:Q (3.76) BS02 peptide N/A GO:0005737 ... P0DP92 39394223
    972389 9fp2:Q (3.76) BS03 ATP N/A GO:0005737 ... P0DP92 39394223
    972390 9fp2:Q (3.76) BS04 ATP N/A GO:0005737 ... P0DP92 39394223
    972391 9fp2:W (3.76) BS01 peptide N/A GO:0005737 ... P0DP92 39394223
    972392 9fp2:W (3.76) BS02 peptide N/A GO:0005737 ... P0DP92 39394223
    972393 9fp2:W (3.76) BS03 ATP N/A GO:0005737 ... P0DP92 39394223
    972394 9fp2:W (3.76) BS04 ATP N/A GO:0005737 ... P0DP92 39394223
    972395 9fp2:W (3.76) BS05 MG N/A GO:0005737 ... P0DP92 39394223
    972396 9fp3:C (2.42) BS01 dna N/A GO:0003677 ... Q8RQE9 41513851
    972397 9fp3:C (2.42) BS02 dna N/A GO:0003677 ... Q8RQE9 41513851
    972398 9fp3:C (2.42) BS03 B4P N/A GO:0003677 ... Q8RQE9 41513851
    972399 9fp3:D (2.42) BS01 dna N/A GO:0000287 ... Q8RQE8 41513851
    972400 9fp3:D (2.42) BS02 dna N/A GO:0000287 ... Q8RQE8 41513851

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).