SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    973601 9fqz:SX (2.85) BS01 rna N/A GO:0002181 ... P62266 N/A
    973602 9fqz:SY (2.85) BS01 rna N/A GO:0002181 ... P62847 N/A
    973603 9fqz:SZ (2.85) BS01 rna N/A GO:0002181 ... P62851 N/A
    973604 9fqz:Sa (2.85) BS01 rna N/A GO:0002181 ... P62854 N/A
    973605 9fqz:Sa (2.85) BS02 ZN N/A GO:0002181 ... P62854 N/A
    973606 9fqz:Sb (2.85) BS01 rna N/A GO:0002181 ... P42677 N/A
    973607 9fqz:Sc (2.85) BS01 rna N/A GO:0000028 ... P62857 N/A
    973608 9fqz:Sd (2.85) BS01 rna N/A GO:0002181 ... P62273 N/A
    973609 9fqz:Sd (2.85) BS02 ZN N/A GO:0002181 ... P62273 N/A
    973610 9fqz:Sd (2.85) BS03 MG N/A GO:0002181 ... P62273 N/A
    973611 9fqz:Se (2.85) BS01 rna N/A GO:0002181 ... P62861 N/A
    973612 9fqz:Sf (2.85) BS01 rna N/A GO:0002181 ... P62979 N/A
    973613 9fqz:Sf (2.85) BS02 ZN N/A GO:0002181 ... P62979 N/A
    973614 9fqz:Sg (2.85) BS01 rna N/A GO:0001891 ... P63244 N/A
    973615 9fr0:A (3.42) BS01 NI N/A GO:0003824 ... P83789 40727002
    973616 9fr0:A (3.42) BS02 SF4 N/A GO:0003824 ... P83789 40727002
    973617 9fr0:B (3.42) BS01 NI N/A GO:0003824 ... P83789 40727002
    973618 9fr0:B (3.42) BS02 SF4 N/A GO:0003824 ... P83789 40727002
    973619 9fr0:C (3.42) BS01 NI N/A GO:0003824 ... P83789 40727002
    973620 9fr0:C (3.42) BS02 SF4 N/A GO:0003824 ... P83789 40727002
    973621 9fr1:A (2.2) BS01 RQM N/A GO:0003824 ... A0A1L8D0M5 40727002
    973622 9fr1:A (2.2) BS02 SF4 N/A GO:0003824 ... A0A1L8D0M5 40727002
    973623 9fr1:A (2.2) BS03 SF4 N/A GO:0003824 ... A0A1L8D0M5 40727002
    973624 9fr1:B (2.2) BS01 RQM N/A GO:0003824 ... A0A1L8D0M5 40727002
    973625 9fr1:B (2.2) BS02 SF4 N/A GO:0003824 ... A0A1L8D0M5 40727002
    973626 9fr1:B (2.2) BS03 SF4 N/A GO:0003824 ... A0A1L8D0M5 40727002
    973627 9fr1:C (2.2) BS01 SF4 N/A GO:0003824 ... Q3ACS4 40727002
    973628 9fr1:C (2.2) BS02 NI N/A GO:0003824 ... Q3ACS4 40727002
    973629 9fr2:A (1.6) BS01 A1IE9 N/A GO:0000082 ... P24941 N/A
    973630 9fr5:A (2.3) BS01 A1IE8 N/A GO:0001837 ... P49841 N/A
    973631 9fr5:B (2.3) BS01 A1IE8 N/A GO:0001837 ... P49841 N/A
    973632 9fr6:A (2.3) BS01 A1IFO N/A GO:0001837 ... P49841 N/A
    973633 9fr6:B (2.3) BS01 A1IFO N/A GO:0001837 ... P49841 N/A
    973634 9fr7:A (2.3) BS01 A1IFJ N/A GO:0001837 ... P49841 N/A
    973635 9fr7:B (2.3) BS01 A1IFJ N/A GO:0001837 ... P49841 N/A
    973636 9fr8:A (2.3) BS01 A1IE7 N/A GO:0001837 ... P49841 N/A
    973637 9fr8:B (2.3) BS01 A1IE7 N/A GO:0001837 ... P49841 N/A
    973638 9fr9:A (2.55) BS01 A1IE6 N/A GO:0001837 ... P49841 N/A
    973639 9fr9:B (2.55) BS01 A1IE6 N/A GO:0001837 ... P49841 N/A
    973640 9fra:3 (2.8) BS01 rna N/A GO:0001682 ... P55858 39753558
    973641 9fra:A (2.8) BS01 rna N/A GO:0003735 ... Q9UXD4 39753558
    973642 9fra:B (2.8) BS01 rna N/A GO:0000028 ... P95993 39753558
    973643 9fra:C (2.8) BS01 rna N/A GO:0005737 ... Q980V0 39753558
    973644 9fra:C (2.8) BS02 ZN N/A GO:0005737 ... Q980V0 39753558
    973645 9fra:C (2.8) BS03 ZN N/A GO:0005737 ... Q980V0 39753558
    973646 9fra:D (2.8) BS01 rna N/A GO:0003723 ... P95987 39753558
    973647 9fra:E (2.8) BS01 rna N/A GO:0003723 ... Q9UX94 39753558
    973648 9fra:F (2.8) BS01 rna N/A GO:0003723 ... Q9UX87 39753558
    973649 9fra:F (2.8) BS02 rna N/A GO:0003723 ... Q9UX87 39753558
    973650 9fra:F (2.8) BS03 ZN N/A GO:0003723 ... Q9UX87 39753558
    973651 9fra:G (2.8) BS01 rna N/A GO:0003735 ... Q980A6 39753558
    973652 9fra:H (2.8) BS01 rna N/A GO:0003723 ... P35026 39753558
    973653 9fra:I (2.8) BS01 rna N/A GO:0003735 ... Q9UX92 39753558
    973654 9fra:J (2.8) BS01 rna N/A GO:0002181 ... Q980W3 39753558
    973655 9fra:K (2.8) BS01 rna N/A GO:0000462 ... P95992 39753558
    973656 9fra:L (2.8) BS01 rna N/A GO:0000049 ... P35027 39753558
    973657 9fra:M (2.8) BS01 rna N/A GO:0003735 ... P95988 39753558
    973658 9fra:N (2.8) BS01 rna N/A GO:0003735 ... P39573 39753558
    973659 9fra:O (2.8) BS01 rna N/A GO:0003676 ... P95986 39753558
    973660 9fra:P (2.8) BS01 rna N/A GO:0002181 ... Q97ZQ5 39753558
    973661 9fra:P (2.8) BS02 ZN N/A GO:0002181 ... Q97ZQ5 39753558
    973662 9fra:Q (2.8) BS01 rna N/A GO:0000462 ... Q980A8 39753558
    973663 9fra:R (2.8) BS01 rna N/A GO:0003735 ... Q9UX98 39753558
    973664 9fra:R (2.8) BS02 ZN N/A GO:0003735 ... Q9UX98 39753558
    973665 9fra:S (2.8) BS01 rna N/A GO:0003735 ... Q980K7 39753558
    973666 9fra:T (2.8) BS01 rna N/A GO:0003723 ... Q9UXA3 39753558
    973667 9fra:T (2.8) BS02 rna N/A GO:0003723 ... Q9UXA3 39753558
    973668 9fra:U (2.8) BS01 rna N/A GO:0003735 ... Q980F7 39753558
    973669 9fra:V (2.8) BS01 rna N/A GO:0002181 ... Q97ZY6 39753558
    973670 9fra:W (2.8) BS01 rna N/A GO:0003735 ... Q97Z80 39753558
    973671 9fra:W (2.8) BS02 ZN N/A GO:0003735 ... Q97Z80 39753558
    973672 9fra:X (2.8) BS01 rna N/A GO:0000028 ... Q980Q5 39753558
    973673 9fra:Y (2.8) BS01 rna N/A GO:0003735 ... Q97ZY7 39753558
    973674 9fra:Z (2.8) BS01 rna N/A GO:0003676 ... Q9UXA0 39753558
    973675 9fra:Z (2.8) BS02 rna N/A GO:0003676 ... Q9UXA0 39753558
    973676 9fra:a (2.8) BS01 rna N/A GO:0005737 ... Q97ZK4 39753558
    973677 9fra:a (2.8) BS02 ZN N/A GO:0005737 ... Q97ZK4 39753558
    973678 9fra:a (2.8) BS03 ZN N/A GO:0005737 ... Q97ZK4 39753558
    973679 9fra:c (2.8) BS01 rna N/A GO:0003735 ... Q97ZZ6 39753558
    973680 9fra:e (2.8) BS01 rna N/A GO:0003735 ... Q97ZH4 39753558
    973681 9frb:A (2.05) BS01 A1IFA N/A GO:0004888 ... P24046 40750757
    973682 9frb:A (2.05) BS02 A1IFA N/A GO:0004888 ... P24046 40750757
    973683 9frb:B (2.05) BS01 A1IFA N/A GO:0004888 ... P24046 40750757
    973684 9frb:B (2.05) BS02 A1IFA N/A GO:0004888 ... P24046 40750757
    973685 9frb:C (2.05) BS01 A1IFA N/A GO:0004888 ... P24046 40750757
    973686 9frb:C (2.05) BS02 A1IFA N/A GO:0004888 ... P24046 40750757
    973687 9frb:D (2.05) BS01 A1IFA N/A GO:0004888 ... P24046 40750757
    973688 9frb:D (2.05) BS02 A1IFA N/A GO:0004888 ... P24046 40750757
    973689 9frb:E (2.05) BS01 A1IFA N/A GO:0004888 ... P24046 40750757
    973690 9frb:E (2.05) BS02 A1IFA N/A GO:0004888 ... P24046 40750757
    973691 9frc:A (2.58) BS01 A1IFT N/A GO:0009058 ... Q8YHV1 N/A
    973692 9frd:A (2.06) BS01 A1IEZ N/A GO:0004672 ... P00533 39824516
    973693 9fre:A (2.19) BS01 EI7 N/A GO:0004888 ... P24046 40750757
    973694 9fre:A (2.19) BS02 EI7 N/A GO:0004888 ... P24046 40750757
    973695 9fre:B (2.19) BS01 EI7 N/A GO:0004888 ... P24046 40750757
    973696 9fre:B (2.19) BS02 EI7 N/A GO:0004888 ... P24046 40750757
    973697 9fre:C (2.19) BS01 EI7 N/A GO:0004888 ... P24046 40750757
    973698 9fre:D (2.19) BS01 EI7 N/A GO:0004888 ... P24046 40750757
    973699 9fre:D (2.19) BS02 EI7 N/A GO:0004888 ... P24046 40750757
    973700 9fre:E (2.19) BS01 EI7 N/A GO:0004888 ... P24046 40750757
    973701 9fre:E (2.19) BS02 EI7 N/A GO:0004888 ... P24046 40750757
    973702 9frf:A (2.41) BS01 A1IFF N/A GO:0004888 ... P24046 40750757
    973703 9frf:A (2.41) BS02 A1IFF N/A GO:0004888 ... P24046 40750757
    973704 9frf:B (2.41) BS01 A1IFF N/A GO:0004888 ... P24046 40750757
    973705 9frf:B (2.41) BS02 A1IFF N/A GO:0004888 ... P24046 40750757
    973706 9frf:C (2.41) BS01 A1IFF N/A GO:0004888 ... P24046 40750757
    973707 9frf:C (2.41) BS02 A1IFF N/A GO:0004888 ... P24046 40750757
    973708 9frf:D (2.41) BS01 A1IFF N/A GO:0004888 ... P24046 40750757
    973709 9frf:D (2.41) BS02 A1IFF N/A GO:0004888 ... P24046 40750757
    973710 9frf:E (2.41) BS01 A1IFF N/A GO:0004888 ... P24046 40750757
    973711 9frf:E (2.41) BS02 A1IFF N/A GO:0004888 ... P24046 40750757
    973712 9frg:A (2.41) BS01 A1IFH N/A GO:0004888 ... P24046 40750757
    973713 9frg:A (2.41) BS02 A1IFH N/A GO:0004888 ... P24046 40750757
    973714 9frg:B (2.41) BS01 A1IFH N/A GO:0004888 ... P24046 40750757
    973715 9frg:B (2.41) BS02 A1IFH N/A GO:0004888 ... P24046 40750757
    973716 9frg:C (2.41) BS01 A1IFH N/A GO:0004888 ... P24046 40750757
    973717 9frg:C (2.41) BS02 A1IFH N/A GO:0004888 ... P24046 40750757
    973718 9frg:D (2.41) BS01 A1IFH N/A GO:0004888 ... P24046 40750757
    973719 9frg:D (2.41) BS02 A1IFH N/A GO:0004888 ... P24046 40750757
    973720 9frg:E (2.41) BS01 A1IFH N/A GO:0004888 ... P24046 40750757
    973721 9frg:E (2.41) BS02 A1IFH N/A GO:0004888 ... P24046 40750757
    973722 9frh:A (2.14) BS01 A1IFF N/A GO:0004888 ... P24046 40750757
    973723 9frh:A (2.14) BS02 A1IFF N/A GO:0004888 ... P24046 40750757
    973724 9frh:B (2.14) BS01 A1IFF N/A GO:0004888 ... P24046 40750757
    973725 9frh:B (2.14) BS02 A1IFF N/A GO:0004888 ... P24046 40750757
    973726 9frh:C (2.14) BS01 A1IFF N/A GO:0004888 ... P24046 40750757
    973727 9frh:C (2.14) BS02 A1IFF N/A GO:0004888 ... P24046 40750757
    973728 9frh:D (2.14) BS01 A1IFF N/A GO:0004888 ... P24046 40750757
    973729 9frh:D (2.14) BS02 A1IFF N/A GO:0004888 ... P24046 40750757
    973730 9frh:E (2.14) BS01 A1IFF N/A GO:0004888 ... P24046 40750757
    973731 9frh:E (2.14) BS02 A1IFF N/A GO:0004888 ... P24046 40750757
    973732 9fri:A (2.14) BS01 A1IFH N/A GO:0004888 ... P24046 40750757
    973733 9fri:A (2.14) BS02 A1IFH N/A GO:0004888 ... P24046 40750757
    973734 9fri:B (2.14) BS01 A1IFH N/A GO:0004888 ... P24046 40750757
    973735 9fri:B (2.14) BS02 A1IFH N/A GO:0004888 ... P24046 40750757
    973736 9fri:C (2.14) BS01 A1IFH N/A GO:0004888 ... P24046 40750757
    973737 9fri:C (2.14) BS02 A1IFH N/A GO:0004888 ... P24046 40750757
    973738 9fri:D (2.14) BS01 A1IFH N/A GO:0004888 ... P24046 40750757
    973739 9fri:D (2.14) BS02 A1IFH N/A GO:0004888 ... P24046 40750757
    973740 9fri:E (2.14) BS01 A1IFH N/A GO:0004888 ... P24046 40750757
    973741 9fri:E (2.14) BS02 A1IFH N/A GO:0004888 ... P24046 40750757
    973742 9frj:C (2.66) BS01 dna N/A GO:0003677 ... Q8RQE9 41513851
    973743 9frj:C (2.66) BS02 dna N/A GO:0003677 ... Q8RQE9 41513851
    973744 9frj:C (2.66) BS03 B4P N/A GO:0003677 ... Q8RQE9 41513851
    973745 9frj:D (2.66) BS01 dna N/A GO:0000287 ... Q8RQE8 41513851
    973746 9frj:D (2.66) BS02 dna N/A GO:0000287 ... Q8RQE8 41513851
    973747 9frj:D (2.66) BS03 ZN N/A GO:0000287 ... Q8RQE8 41513851
    973748 9frj:D (2.66) BS04 ZN N/A GO:0000287 ... Q8RQE8 41513851
    973749 9frj:D (2.66) BS05 MG N/A GO:0000287 ... Q8RQE8 41513851
    973750 9frj:D (2.66) BS06 2TM N/A GO:0000287 ... Q8RQE8 41513851
    973751 9frj:D (2.66) BS07 B4P N/A GO:0000287 ... Q8RQE8 41513851
    973752 9frj:D (2.66) BS08 2TM N/A GO:0000287 ... Q8RQE8 41513851
    973753 9frj:F (2.66) BS01 dna N/A GO:0003677 ... Q72L95 41513851
    973754 9frj:F (2.66) BS02 dna N/A GO:0003677 ... Q72L95 41513851
    973755 9frk:3 (3.0) BS01 rna N/A GO:0001682 ... P55858 39753558
    973756 9frk:A (3.0) BS01 rna N/A GO:0003735 ... Q9UXD4 39753558
    973757 9frk:B (3.0) BS01 rna N/A GO:0000028 ... P95993 39753558
    973758 9frk:C (3.0) BS01 rna N/A GO:0005737 ... Q980V0 39753558
    973759 9frk:C (3.0) BS02 ZN N/A GO:0005737 ... Q980V0 39753558
    973760 9frk:C (3.0) BS03 ZN N/A GO:0005737 ... Q980V0 39753558
    973761 9frk:D (3.0) BS01 rna N/A GO:0003723 ... P95987 39753558
    973762 9frk:E (3.0) BS01 rna N/A GO:0003723 ... Q9UX94 39753558
    973763 9frk:F (3.0) BS01 rna N/A GO:0003723 ... Q9UX87 39753558
    973764 9frk:F (3.0) BS02 ZN N/A GO:0003723 ... Q9UX87 39753558
    973765 9frk:G (3.0) BS01 rna N/A GO:0003735 ... Q980A6 39753558
    973766 9frk:H (3.0) BS01 rna N/A GO:0003723 ... P35026 39753558
    973767 9frk:I (3.0) BS01 rna N/A GO:0003735 ... Q9UX92 39753558
    973768 9frk:J (3.0) BS01 rna N/A GO:0002181 ... Q980W3 39753558
    973769 9frk:K (3.0) BS01 rna N/A GO:0000462 ... P95992 39753558
    973770 9frk:L (3.0) BS01 rna N/A GO:0000049 ... P35027 39753558
    973771 9frk:M (3.0) BS01 rna N/A GO:0003735 ... P95988 39753558
    973772 9frk:N (3.0) BS01 rna N/A GO:0003735 ... P39573 39753558
    973773 9frk:O (3.0) BS01 rna N/A GO:0003676 ... P95986 39753558
    973774 9frk:P (3.0) BS01 rna N/A GO:0002181 ... Q97ZQ5 39753558
    973775 9frk:P (3.0) BS02 ZN N/A GO:0002181 ... Q97ZQ5 39753558
    973776 9frk:Q (3.0) BS01 rna N/A GO:0000462 ... Q980A8 39753558
    973777 9frk:R (3.0) BS01 rna N/A GO:0003735 ... Q9UX98 39753558
    973778 9frk:R (3.0) BS02 ZN N/A GO:0003735 ... Q9UX98 39753558
    973779 9frk:S (3.0) BS01 rna N/A GO:0003735 ... Q980K7 39753558
    973780 9frk:T (3.0) BS01 rna N/A GO:0003723 ... Q9UXA3 39753558
    973781 9frk:U (3.0) BS01 rna N/A GO:0003735 ... Q980F7 39753558
    973782 9frk:V (3.0) BS01 rna N/A GO:0002181 ... Q97ZY6 39753558
    973783 9frk:W (3.0) BS01 rna N/A GO:0003735 ... Q97Z80 39753558
    973784 9frk:W (3.0) BS02 ZN N/A GO:0003735 ... Q97Z80 39753558
    973785 9frk:X (3.0) BS01 rna N/A GO:0000028 ... Q980Q5 39753558
    973786 9frk:Y (3.0) BS01 rna N/A GO:0003735 ... Q97ZY7 39753558
    973787 9frk:Z (3.0) BS01 rna N/A GO:0003676 ... Q9UXA0 39753558
    973788 9frk:a (3.0) BS01 rna N/A GO:0005737 ... Q97ZK4 39753558
    973789 9frk:a (3.0) BS02 ZN N/A GO:0005737 ... Q97ZK4 39753558
    973790 9frk:a (3.0) BS03 ZN N/A GO:0005737 ... Q97ZK4 39753558
    973791 9frk:c (3.0) BS01 rna N/A GO:0003735 ... Q97ZZ6 39753558
    973792 9frk:e (3.0) BS01 rna N/A GO:0003735 ... Q97ZH4 39753558
    973793 9frl:3 (2.97) BS01 rna N/A GO:0001682 ... P55858 39753558
    973794 9frl:A (2.97) BS01 rna N/A GO:0003735 ... Q9UXD4 39753558
    973795 9frl:B (2.97) BS01 rna N/A GO:0000028 ... P95993 39753558
    973796 9frl:C (2.97) BS01 rna N/A GO:0005737 ... Q980V0 39753558
    973797 9frl:C (2.97) BS02 ZN N/A GO:0005737 ... Q980V0 39753558
    973798 9frl:C (2.97) BS03 ZN N/A GO:0005737 ... Q980V0 39753558
    973799 9frl:D (2.97) BS01 rna N/A GO:0003723 ... P95987 39753558
    973800 9frl:E (2.97) BS01 rna N/A GO:0003723 ... Q9UX94 39753558

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).