SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    973801 9frl:F (2.97) BS01 rna N/A GO:0003723 ... Q9UX87 39753558
    973802 9frl:F (2.97) BS02 ZN N/A GO:0003723 ... Q9UX87 39753558
    973803 9frl:G (2.97) BS01 rna N/A GO:0003735 ... Q980A6 39753558
    973804 9frl:H (2.97) BS01 rna N/A GO:0003723 ... P35026 39753558
    973805 9frl:I (2.97) BS01 rna N/A GO:0003735 ... Q9UX92 39753558
    973806 9frl:J (2.97) BS01 rna N/A GO:0002181 ... Q980W3 39753558
    973807 9frl:K (2.97) BS01 rna N/A GO:0000462 ... P95992 39753558
    973808 9frl:L (2.97) BS01 rna N/A GO:0000049 ... P35027 39753558
    973809 9frl:M (2.97) BS01 rna N/A GO:0003735 ... P95988 39753558
    973810 9frl:N (2.97) BS01 rna N/A GO:0003735 ... P39573 39753558
    973811 9frl:O (2.97) BS01 rna N/A GO:0003676 ... P95986 39753558
    973812 9frl:P (2.97) BS01 rna N/A GO:0002181 ... Q97ZQ5 39753558
    973813 9frl:P (2.97) BS02 ZN N/A GO:0002181 ... Q97ZQ5 39753558
    973814 9frl:Q (2.97) BS01 rna N/A GO:0000462 ... Q980A8 39753558
    973815 9frl:R (2.97) BS01 rna N/A GO:0003735 ... Q9UX98 39753558
    973816 9frl:R (2.97) BS02 ZN N/A GO:0003735 ... Q9UX98 39753558
    973817 9frl:S (2.97) BS01 rna N/A GO:0003735 ... Q980K7 39753558
    973818 9frl:T (2.97) BS01 rna N/A GO:0003723 ... Q9UXA3 39753558
    973819 9frl:U (2.97) BS01 rna N/A GO:0003735 ... Q980F7 39753558
    973820 9frl:V (2.97) BS01 rna N/A GO:0002181 ... Q97ZY6 39753558
    973821 9frl:W (2.97) BS01 rna N/A GO:0003735 ... Q97Z80 39753558
    973822 9frl:W (2.97) BS02 ZN N/A GO:0003735 ... Q97Z80 39753558
    973823 9frl:X (2.97) BS01 rna N/A GO:0000028 ... Q980Q5 39753558
    973824 9frl:Y (2.97) BS01 rna N/A GO:0003735 ... Q97ZY7 39753558
    973825 9frl:Z (2.97) BS01 rna N/A GO:0003676 ... Q9UXA0 39753558
    973826 9frl:a (2.97) BS01 rna N/A GO:0005737 ... Q97ZK4 39753558
    973827 9frl:a (2.97) BS02 ZN N/A GO:0005737 ... Q97ZK4 39753558
    973828 9frl:a (2.97) BS03 ZN N/A GO:0005737 ... Q97ZK4 39753558
    973829 9frl:c (2.97) BS01 rna N/A GO:0003735 ... Q97ZZ6 39753558
    973830 9frl:e (2.97) BS01 rna N/A GO:0003735 ... Q97ZH4 39753558
    973831 9frm:A (2.0) BS01 A1IFQ N/A GO:0004645 ... P00489 N/A
    973832 9frn:A (1.87) BS01 EVB N/A N/A A0AAP7ZHZ3 38463617
    973833 9frn:A (1.87) BS02 BDF N/A N/A A0AAP7ZHZ3 38463617
    973834 9frn:A (1.87) BS03 BDF N/A N/A A0AAP7ZHZ3 38463617
    973835 9frn:A (1.87) BS04 EVB N/A N/A A0AAP7ZHZ3 38463617
    973836 9frn:A (1.87) BS05 BDF N/A N/A A0AAP7ZHZ3 38463617
    973837 9frn:A (1.87) BS06 EVB N/A N/A A0AAP7ZHZ3 38463617
    973838 9frn:B (1.87) BS01 EVB N/A N/A A0AAP7ZHZ3 38463617
    973839 9frn:B (1.87) BS02 BDF N/A N/A A0AAP7ZHZ3 38463617
    973840 9frn:B (1.87) BS03 EVB N/A N/A A0AAP7ZHZ3 38463617
    973841 9frn:B (1.87) BS04 BDF N/A N/A A0AAP7ZHZ3 38463617
    973842 9frn:C (1.87) BS01 EVB N/A N/A A0AAP7ZHZ3 38463617
    973843 9frn:C (1.87) BS02 BDF N/A N/A A0AAP7ZHZ3 38463617
    973844 9frn:C (1.87) BS03 BDF N/A N/A A0AAP7ZHZ3 38463617
    973845 9frn:C (1.87) BS04 BDF N/A N/A A0AAP7ZHZ3 38463617
    973846 9frn:C (1.87) BS05 EVB N/A N/A A0AAP7ZHZ3 38463617
    973847 9frn:D (1.87) BS01 BDF N/A N/A A0AAP7ZHZ3 38463617
    973848 9frn:D (1.87) BS02 BDF N/A N/A A0AAP7ZHZ3 38463617
    973849 9frn:E (1.87) BS01 BDF N/A N/A A0AAP7ZHZ3 38463617
    973850 9frn:E (1.87) BS02 BDF N/A N/A A0AAP7ZHZ3 38463617
    973851 9frn:E (1.87) BS03 BDF N/A N/A A0AAP7ZHZ3 38463617
    973852 9frn:F (1.87) BS01 BDF N/A N/A A0AAP7ZHZ3 38463617
    973853 9frn:F (1.87) BS02 BDF N/A N/A A0AAP7ZHZ3 38463617
    973854 9frn:F (1.87) BS03 BDF N/A N/A A0AAP7ZHZ3 38463617
    973855 9fro:C (1.71) BS01 FWQ N/A N/A A0A140UHM9 39592260
    973856 9fro:D (1.71) BS01 FWQ N/A N/A A0A140UHM9 39592260
    973857 9fro:D (1.71) BS02 FWQ N/A N/A A0A140UHM9 39592260
    973858 9fro:D (1.71) BS03 FWQ N/A N/A A0A140UHM9 39592260
    973859 9fro:E (1.71) BS01 FWQ N/A N/A A0A140UHM9 39592260
    973860 9frp:A (1.4) BS01 A1IFB N/A N/A Q53GL7 N/A
    973861 9frp:B (1.4) BS01 A1IFB N/A N/A Q53GL7 N/A
    973862 9frs:A (2.02) BS01 A1IFC N/A N/A Q53GL7 N/A
    973863 9frs:B (2.02) BS01 A1IFC N/A N/A Q53GL7 N/A
    973864 9fru:A (2.0) BS01 ZN N/A GO:0017136 ... Q8IXJ6 40390200
    973865 9fru:A (2.0) BS02 NAD N/A GO:0017136 ... Q8IXJ6 40390200
    973866 9fru:A (2.0) BS03 A1IBW N/A GO:0017136 ... Q8IXJ6 40390200
    973867 9frv:A (2.06) BS01 MN N/A GO:0000050 ... P78540 39540340
    973868 9frv:A (2.06) BS02 MN N/A GO:0000050 ... P78540 39540340
    973869 9frv:B (2.06) BS01 MN N/A GO:0000050 ... P78540 39540340
    973870 9frv:B (2.06) BS02 MN N/A GO:0000050 ... P78540 39540340
    973871 9frv:C (2.06) BS01 MN N/A GO:0000050 ... P78540 39540340
    973872 9frv:C (2.06) BS02 MN N/A GO:0000050 ... P78540 39540340
    973873 9frv:C (2.06) BS03 A1IFX N/A GO:0000050 ... P78540 39540340
    973874 9frw:G (2.85) BS01 MG N/A GO:0003674 ... P21243 41504611
    973875 9frw:K (2.85) BS01 MG N/A GO:0004298 ... P30656 41504611
    973876 9frw:U (2.85) BS01 MG N/A GO:0003674 ... P21243 41504611
    973877 9frw:V (2.85) BS01 MG N/A GO:0004298 ... P25043 41504611
    973878 9frw:W (2.85) BS01 MG N/A GO:0005515 ... P25451 41504611
    973879 9frw:Y (2.85) BS01 MG N/A GO:0004298 ... P30656 41504611
    973880 9frw:Z (2.85) BS01 MG N/A GO:0003674 ... P23724 41504611
    973881 9frz:A (1.7) BS01 A1IFZ N/A GO:0004222 ... P14756 N/A
    973882 9frz:A (1.7) BS02 CA N/A GO:0004222 ... P14756 N/A
    973883 9frz:A (1.7) BS03 ZN N/A GO:0004222 ... P14756 N/A
    973884 9fs0:A (1.3) BS01 CA N/A GO:0004222 ... P14756 N/A
    973885 9fs0:A (1.3) BS02 ZN N/A GO:0004222 ... P14756 N/A
    973886 9fs0:A (1.3) BS03 A1IFY N/A GO:0004222 ... P14756 N/A
    973887 9fs1:A (1.21) BS01 NCD N/A GO:0016787 ... P27708 39447673
    973888 9fs1:A (1.21) BS02 ZN N/A GO:0016787 ... P27708 39447673
    973889 9fs1:A (1.21) BS03 ZN N/A GO:0016787 ... P27708 39447673
    973890 9fs1:A (1.21) BS04 ZN N/A GO:0016787 ... P27708 39447673
    973891 9fs2:A (1.12) BS01 ZN N/A GO:0016787 ... P27708 39447673
    973892 9fs2:A (1.12) BS02 ZN N/A GO:0016787 ... P27708 39447673
    973893 9fs2:A (1.12) BS03 NCD N/A GO:0016787 ... P27708 39447673
    973894 9fs2:A (1.12) BS04 ZN N/A GO:0016787 ... P27708 39447673
    973895 9fs2:A (1.12) BS05 DOR N/A GO:0016787 ... P27708 39447673
    973896 9fs3:A (1.18) BS01 ZN N/A GO:0016787 ... P27708 39447673
    973897 9fs3:A (1.18) BS02 ZN N/A GO:0016787 ... P27708 39447673
    973898 9fs3:A (1.18) BS03 ZN N/A GO:0016787 ... P27708 39447673
    973899 9fs4:A (1.6) BS01 peptide N/A GO:0001836 ... P31947 N/A
    973900 9fs4:A (1.6) BS02 TJ8 N/A GO:0001836 ... P31947 N/A
    973901 9fs6:3 (2.9) BS01 rna N/A GO:0001682 ... P55858 39753558
    973902 9fs6:A (2.9) BS01 rna N/A GO:0003735 ... Q9UXD4 39753558
    973903 9fs6:B (2.9) BS01 rna N/A GO:0000028 ... P95993 39753558
    973904 9fs6:C (2.9) BS01 rna N/A GO:0005737 ... Q980V0 39753558
    973905 9fs6:C (2.9) BS02 ZN N/A GO:0005737 ... Q980V0 39753558
    973906 9fs6:C (2.9) BS03 ZN N/A GO:0005737 ... Q980V0 39753558
    973907 9fs6:D (2.9) BS01 rna N/A GO:0003723 ... P95987 39753558
    973908 9fs6:E (2.9) BS01 rna N/A GO:0003723 ... Q9UX94 39753558
    973909 9fs6:F (2.9) BS01 rna N/A GO:0003723 ... Q9UX87 39753558
    973910 9fs6:F (2.9) BS02 ZN N/A GO:0003723 ... Q9UX87 39753558
    973911 9fs6:G (2.9) BS01 rna N/A GO:0003735 ... Q980A6 39753558
    973912 9fs6:H (2.9) BS01 rna N/A GO:0003723 ... P35026 39753558
    973913 9fs6:I (2.9) BS01 rna N/A GO:0003735 ... Q9UX92 39753558
    973914 9fs6:J (2.9) BS01 rna N/A GO:0002181 ... Q980W3 39753558
    973915 9fs6:K (2.9) BS01 rna N/A GO:0000462 ... P95992 39753558
    973916 9fs6:L (2.9) BS01 rna N/A GO:0000049 ... P35027 39753558
    973917 9fs6:M (2.9) BS01 rna N/A GO:0003735 ... P95988 39753558
    973918 9fs6:N (2.9) BS01 rna N/A GO:0003735 ... P39573 39753558
    973919 9fs6:O (2.9) BS01 rna N/A GO:0003676 ... P95986 39753558
    973920 9fs6:P (2.9) BS01 rna N/A GO:0002181 ... Q97ZQ5 39753558
    973921 9fs6:P (2.9) BS02 ZN N/A GO:0002181 ... Q97ZQ5 39753558
    973922 9fs6:Q (2.9) BS01 rna N/A GO:0000462 ... Q980A8 39753558
    973923 9fs6:R (2.9) BS01 rna N/A GO:0003735 ... Q9UX98 39753558
    973924 9fs6:R (2.9) BS02 ZN N/A GO:0003735 ... Q9UX98 39753558
    973925 9fs6:S (2.9) BS01 rna N/A GO:0003735 ... Q980K7 39753558
    973926 9fs6:T (2.9) BS01 rna N/A GO:0003723 ... Q9UXA3 39753558
    973927 9fs6:T (2.9) BS02 rna N/A GO:0003723 ... Q9UXA3 39753558
    973928 9fs6:U (2.9) BS01 rna N/A GO:0003735 ... Q980F7 39753558
    973929 9fs6:V (2.9) BS01 rna N/A GO:0002181 ... Q97ZY6 39753558
    973930 9fs6:W (2.9) BS01 rna N/A GO:0003735 ... Q97Z80 39753558
    973931 9fs6:W (2.9) BS02 ZN N/A GO:0003735 ... Q97Z80 39753558
    973932 9fs6:X (2.9) BS01 rna N/A GO:0000028 ... Q980Q5 39753558
    973933 9fs6:Y (2.9) BS01 rna N/A GO:0003735 ... Q97ZY7 39753558
    973934 9fs6:Z (2.9) BS01 rna N/A GO:0003676 ... Q9UXA0 39753558
    973935 9fs6:a (2.9) BS01 rna N/A GO:0005737 ... Q97ZK4 39753558
    973936 9fs6:a (2.9) BS02 ZN N/A GO:0005737 ... Q97ZK4 39753558
    973937 9fs6:a (2.9) BS03 ZN N/A GO:0005737 ... Q97ZK4 39753558
    973938 9fs6:b (2.9) BS01 rna N/A GO:0003729 ... Q97ZR1 39753558
    973939 9fs6:b (2.9) BS02 ZN N/A GO:0003729 ... Q97ZR1 39753558
    973940 9fs6:c (2.9) BS01 rna N/A GO:0003735 ... Q97ZZ6 39753558
    973941 9fs6:e (2.9) BS01 rna N/A GO:0003735 ... Q97ZH4 39753558
    973942 9fs8:3 (3.7) BS01 rna N/A GO:0001682 ... P55858 39753558
    973943 9fs8:A (3.7) BS01 rna N/A GO:0003735 ... Q9UXD4 39753558
    973944 9fs8:B (3.7) BS01 rna N/A GO:0000028 ... P95993 39753558
    973945 9fs8:C (3.7) BS01 rna N/A GO:0005737 ... Q980V0 39753558
    973946 9fs8:C (3.7) BS02 ZN N/A GO:0005737 ... Q980V0 39753558
    973947 9fs8:C (3.7) BS03 ZN N/A GO:0005737 ... Q980V0 39753558
    973948 9fs8:D (3.7) BS01 rna N/A GO:0003723 ... P95987 39753558
    973949 9fs8:E (3.7) BS01 rna N/A GO:0003723 ... Q9UX94 39753558
    973950 9fs8:F (3.7) BS01 rna N/A GO:0003723 ... Q9UX87 39753558
    973951 9fs8:F (3.7) BS02 ZN N/A GO:0003723 ... Q9UX87 39753558
    973952 9fs8:G (3.7) BS01 rna N/A GO:0003735 ... Q980A6 39753558
    973953 9fs8:H (3.7) BS01 rna N/A GO:0003723 ... P35026 39753558
    973954 9fs8:I (3.7) BS01 rna N/A GO:0003735 ... Q9UX92 39753558
    973955 9fs8:J (3.7) BS01 rna N/A GO:0002181 ... Q980W3 39753558
    973956 9fs8:K (3.7) BS01 rna N/A GO:0000462 ... P95992 39753558
    973957 9fs8:L (3.7) BS01 rna N/A GO:0000049 ... P35027 39753558
    973958 9fs8:M (3.7) BS01 rna N/A GO:0003735 ... P95988 39753558
    973959 9fs8:N (3.7) BS01 rna N/A GO:0003735 ... P39573 39753558
    973960 9fs8:O (3.7) BS01 rna N/A GO:0003676 ... P95986 39753558
    973961 9fs8:P (3.7) BS01 rna N/A GO:0002181 ... Q97ZQ5 39753558
    973962 9fs8:P (3.7) BS02 ZN N/A GO:0002181 ... Q97ZQ5 39753558
    973963 9fs8:Q (3.7) BS01 rna N/A GO:0000462 ... Q980A8 39753558
    973964 9fs8:R (3.7) BS01 rna N/A GO:0003735 ... Q9UX98 39753558
    973965 9fs8:R (3.7) BS02 ZN N/A GO:0003735 ... Q9UX98 39753558
    973966 9fs8:S (3.7) BS01 rna N/A GO:0003735 ... Q980K7 39753558
    973967 9fs8:T (3.7) BS01 rna N/A GO:0003723 ... Q9UXA3 39753558
    973968 9fs8:T (3.7) BS02 rna N/A GO:0003723 ... Q9UXA3 39753558
    973969 9fs8:U (3.7) BS01 rna N/A GO:0003735 ... Q980F7 39753558
    973970 9fs8:V (3.7) BS01 rna N/A GO:0002181 ... Q97ZY6 39753558
    973971 9fs8:W (3.7) BS01 rna N/A GO:0003735 ... Q97Z80 39753558
    973972 9fs8:W (3.7) BS02 ZN N/A GO:0003735 ... Q97Z80 39753558
    973973 9fs8:X (3.7) BS01 rna N/A GO:0000028 ... Q980Q5 39753558
    973974 9fs8:Y (3.7) BS01 rna N/A GO:0003735 ... Q97ZY7 39753558
    973975 9fs8:Z (3.7) BS01 rna N/A GO:0003676 ... Q9UXA0 39753558
    973976 9fs8:a (3.7) BS01 rna N/A GO:0005737 ... Q97ZK4 39753558
    973977 9fs8:a (3.7) BS02 ZN N/A GO:0005737 ... Q97ZK4 39753558
    973978 9fs8:a (3.7) BS03 ZN N/A GO:0005737 ... Q97ZK4 39753558
    973979 9fs8:b (3.7) BS01 rna N/A GO:0003729 ... Q97ZR1 39753558
    973980 9fs8:b (3.7) BS02 ZN N/A GO:0003729 ... Q97ZR1 39753558
    973981 9fs8:c (3.7) BS01 rna N/A GO:0003735 ... Q97ZZ6 39753558
    973982 9fs8:e (3.7) BS01 rna N/A GO:0003735 ... Q97ZH4 39753558
    973983 9fsf:3 (2.8) BS01 rna N/A GO:0001682 ... P55858 39753558
    973984 9fsf:A (2.8) BS01 rna N/A GO:0003735 ... Q9UXD4 39753558
    973985 9fsf:B (2.8) BS01 rna N/A GO:0000028 ... P95993 39753558
    973986 9fsf:C (2.8) BS01 rna N/A GO:0005737 ... Q980V0 39753558
    973987 9fsf:C (2.8) BS02 ZN N/A GO:0005737 ... Q980V0 39753558
    973988 9fsf:C (2.8) BS03 ZN N/A GO:0005737 ... Q980V0 39753558
    973989 9fsf:D (2.8) BS01 rna N/A GO:0003723 ... P95987 39753558
    973990 9fsf:E (2.8) BS01 rna N/A GO:0003723 ... Q9UX94 39753558
    973991 9fsf:F (2.8) BS01 rna N/A GO:0003723 ... Q9UX87 39753558
    973992 9fsf:F (2.8) BS02 rna N/A GO:0003723 ... Q9UX87 39753558
    973993 9fsf:F (2.8) BS03 ZN N/A GO:0003723 ... Q9UX87 39753558
    973994 9fsf:G (2.8) BS01 rna N/A GO:0003735 ... Q980A6 39753558
    973995 9fsf:H (2.8) BS01 rna N/A GO:0003723 ... P35026 39753558
    973996 9fsf:I (2.8) BS01 rna N/A GO:0003735 ... Q9UX92 39753558
    973997 9fsf:J (2.8) BS01 rna N/A GO:0002181 ... Q980W3 39753558
    973998 9fsf:K (2.8) BS01 rna N/A GO:0000462 ... P95992 39753558
    973999 9fsf:L (2.8) BS01 rna N/A GO:0000049 ... P35027 39753558
    974000 9fsf:M (2.8) BS01 rna N/A GO:0003735 ... P95988 39753558

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).