SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    974001 9fsf:N (2.8) BS01 rna N/A GO:0003735 ... P39573 39753558
    974002 9fsf:O (2.8) BS01 rna N/A GO:0003676 ... P95986 39753558
    974003 9fsf:P (2.8) BS01 rna N/A GO:0002181 ... Q97ZQ5 39753558
    974004 9fsf:P (2.8) BS02 ZN N/A GO:0002181 ... Q97ZQ5 39753558
    974005 9fsf:Q (2.8) BS01 rna N/A GO:0000462 ... Q980A8 39753558
    974006 9fsf:R (2.8) BS01 rna N/A GO:0003735 ... Q9UX98 39753558
    974007 9fsf:R (2.8) BS02 ZN N/A GO:0003735 ... Q9UX98 39753558
    974008 9fsf:S (2.8) BS01 rna N/A GO:0003735 ... Q980K7 39753558
    974009 9fsf:T (2.8) BS01 rna N/A GO:0003723 ... Q9UXA3 39753558
    974010 9fsf:T (2.8) BS02 rna N/A GO:0003723 ... Q9UXA3 39753558
    974011 9fsf:U (2.8) BS01 rna N/A GO:0003735 ... Q980F7 39753558
    974012 9fsf:V (2.8) BS01 rna N/A GO:0002181 ... Q97ZY6 39753558
    974013 9fsf:W (2.8) BS01 rna N/A GO:0003735 ... Q97Z80 39753558
    974014 9fsf:W (2.8) BS02 ZN N/A GO:0003735 ... Q97Z80 39753558
    974015 9fsf:X (2.8) BS01 rna N/A GO:0000028 ... Q980Q5 39753558
    974016 9fsf:Y (2.8) BS01 rna N/A GO:0003735 ... Q97ZY7 39753558
    974017 9fsf:Z (2.8) BS01 rna N/A GO:0003676 ... Q9UXA0 39753558
    974018 9fsf:Z (2.8) BS02 rna N/A GO:0003676 ... Q9UXA0 39753558
    974019 9fsf:a (2.8) BS01 rna N/A GO:0005737 ... Q97ZK4 39753558
    974020 9fsf:a (2.8) BS02 ZN N/A GO:0005737 ... Q97ZK4 39753558
    974021 9fsf:a (2.8) BS03 ZN N/A GO:0005737 ... Q97ZK4 39753558
    974022 9fsf:c (2.8) BS01 rna N/A GO:0003735 ... Q97ZZ6 39753558
    974023 9fsf:e (2.8) BS01 rna N/A GO:0003735 ... Q97ZH4 39753558
    974024 9fsg:A (1.6) BS01 MG N/A N/A A0A7Z7HU23 N/A
    974025 9fsg:A (1.6) BS02 A1IF2 N/A N/A A0A7Z7HU23 N/A
    974026 9fsg:A (1.6) BS03 A1IF2 N/A N/A A0A7Z7HU23 N/A
    974027 9fsg:B (1.6) BS01 A1IF2 N/A N/A A0A7Z7HU23 N/A
    974028 9fsg:B (1.6) BS02 A1IF2 N/A N/A A0A7Z7HU23 N/A
    974029 9fsg:B (1.6) BS03 ZN N/A N/A A0A7Z7HU23 N/A
    974030 9fsh:A (2.08) BS01 TJQ N/A GO:0004842 ... Q9HAU4 40179885
    974031 9fsj:A (2.05) BS01 TJQ N/A GO:0004842 ... Q9HCE7 40179885
    974032 9fsl:A (2.417) BS01 FES N/A GO:0080146 ... Q6LX84 41291062
    974033 9fsl:B (2.417) BS01 FES N/A GO:0080146 ... Q6LX84 41291062
    974034 9fsn:A (2.2) BS01 MN N/A GO:0000122 ... Q9NWT6 39291299
    974035 9fsn:A (2.2) BS02 A1IF7 N/A GO:0000122 ... Q9NWT6 39291299
    974036 9fso:A (3.28) BS01 dna N/A GO:0000287 ... O14802 39747245
    974037 9fso:A (3.28) BS02 ZN N/A GO:0000287 ... O14802 39747245
    974038 9fso:A (3.28) BS03 ZN N/A GO:0000287 ... O14802 39747245
    974039 9fso:A (3.28) BS04 MG N/A GO:0000287 ... O14802 39747245
    974040 9fso:B (3.28) BS01 dna N/A GO:0000428 ... Q9NW08 39747245
    974041 9fso:B (3.28) BS02 ZN N/A GO:0000428 ... Q9NW08 39747245
    974042 9fso:F (3.28) BS01 dna N/A GO:0003690 ... Q9H1D9 39747245
    974043 9fso:F (3.28) BS02 dna N/A GO:0003690 ... Q9H1D9 39747245
    974044 9fso:F (3.28) BS03 SF4 N/A GO:0003690 ... Q9H1D9 39747245
    974045 9fso:J (3.28) BS01 ZN N/A GO:0003676 ... Q9Y2Y1 39747245
    974046 9fso:M (3.28) BS01 dna N/A GO:0003677 ... P19388 39747245
    974047 9fso:P (3.28) BS01 ZN N/A GO:0001650 ... P53803 39747245
    974048 9fso:Q (3.28) BS01 ZN N/A GO:0003677 ... P62875 39747245
    974049 9fso:R (3.28) BS01 dna N/A GO:0003677 ... P20226 39747245
    974050 9fso:R (3.28) BS02 dna N/A GO:0003677 ... P20226 39747245
    974051 9fso:S (3.28) BS01 dna N/A GO:0000126 ... Q9HAW0 39747245
    974052 9fso:S (3.28) BS02 dna N/A GO:0000126 ... Q9HAW0 39747245
    974053 9fso:S (3.28) BS03 ZN N/A GO:0000126 ... Q9HAW0 39747245
    974054 9fso:T (3.28) BS01 dna N/A N/A A6H8Y1 39747245
    974055 9fso:W (3.28) BS01 dna N/A GO:0000978 ... Q5SXM2 39747245
    974056 9fso:W (3.28) BS02 dna N/A GO:0000978 ... Q5SXM2 39747245
    974057 9fso:Z (3.28) BS01 dna N/A GO:0000978 ... Q92966 39747245
    974058 9fso:Z (3.28) BS02 dna N/A GO:0000978 ... Q92966 39747245
    974059 9fso:Z (3.28) BS03 ZN N/A GO:0000978 ... Q92966 39747245
    974060 9fso:Z (3.28) BS04 ZN N/A GO:0000978 ... Q92966 39747245
    974061 9fsp:A (3.39) BS01 dna N/A GO:0000287 ... O14802 39747245
    974062 9fsp:A (3.39) BS02 ZN N/A GO:0000287 ... O14802 39747245
    974063 9fsp:A (3.39) BS03 ZN N/A GO:0000287 ... O14802 39747245
    974064 9fsp:A (3.39) BS04 MG N/A GO:0000287 ... O14802 39747245
    974065 9fsp:B (3.39) BS01 ZN N/A GO:0000428 ... Q9NW08 39747245
    974066 9fsp:F (3.39) BS01 dna N/A GO:0003690 ... Q9H1D9 39747245
    974067 9fsp:F (3.39) BS02 dna N/A GO:0003690 ... Q9H1D9 39747245
    974068 9fsp:F (3.39) BS03 SF4 N/A GO:0003690 ... Q9H1D9 39747245
    974069 9fsp:J (3.39) BS01 ZN N/A GO:0003676 ... Q9Y2Y1 39747245
    974070 9fsp:M (3.39) BS01 dna N/A GO:0003677 ... P19388 39747245
    974071 9fsp:P (3.39) BS01 ZN N/A GO:0001650 ... P53803 39747245
    974072 9fsp:Q (3.39) BS01 ZN N/A GO:0003677 ... P62875 39747245
    974073 9fsp:R (3.39) BS01 dna N/A GO:0003677 ... P20226 39747245
    974074 9fsp:R (3.39) BS02 dna N/A GO:0003677 ... P20226 39747245
    974075 9fsp:S (3.39) BS01 dna N/A GO:0000126 ... Q9HAW0 39747245
    974076 9fsp:S (3.39) BS02 dna N/A GO:0000126 ... Q9HAW0 39747245
    974077 9fsp:S (3.39) BS03 ZN N/A GO:0000126 ... Q9HAW0 39747245
    974078 9fsp:T (3.39) BS01 dna N/A N/A A6H8Y1 39747245
    974079 9fsp:T (3.39) BS02 dna N/A N/A A6H8Y1 39747245
    974080 9fsp:W (3.39) BS01 dna N/A GO:0000978 ... Q5SXM2 39747245
    974081 9fsp:W (3.39) BS02 dna N/A GO:0000978 ... Q5SXM2 39747245
    974082 9fsp:Z (3.39) BS01 dna N/A GO:0000978 ... Q92966 39747245
    974083 9fsp:Z (3.39) BS02 dna N/A GO:0000978 ... Q92966 39747245
    974084 9fsp:Z (3.39) BS03 ZN N/A GO:0000978 ... Q92966 39747245
    974085 9fsq:A (3.51) BS01 ZN N/A GO:0000287 ... O14802 39747245
    974086 9fsq:A (3.51) BS02 ZN N/A GO:0000287 ... O14802 39747245
    974087 9fsq:A (3.51) BS03 MG N/A GO:0000287 ... O14802 39747245
    974088 9fsq:B (3.51) BS01 ZN N/A GO:0000428 ... Q9NW08 39747245
    974089 9fsq:F (3.51) BS01 dna N/A GO:0003690 ... Q9H1D9 39747245
    974090 9fsq:F (3.51) BS02 dna N/A GO:0003690 ... Q9H1D9 39747245
    974091 9fsq:F (3.51) BS03 SF4 N/A GO:0003690 ... Q9H1D9 39747245
    974092 9fsq:J (3.51) BS01 ZN N/A GO:0003676 ... Q9Y2Y1 39747245
    974093 9fsq:M (3.51) BS01 dna N/A GO:0003677 ... P19388 39747245
    974094 9fsq:P (3.51) BS01 ZN N/A GO:0001650 ... P53803 39747245
    974095 9fsq:Q (3.51) BS01 ZN N/A GO:0003677 ... P62875 39747245
    974096 9fsq:R (3.51) BS01 dna N/A GO:0003677 ... P20226 39747245
    974097 9fsq:R (3.51) BS02 dna N/A GO:0003677 ... P20226 39747245
    974098 9fsq:S (3.51) BS01 dna N/A GO:0000126 ... Q9HAW0 39747245
    974099 9fsq:S (3.51) BS02 dna N/A GO:0000126 ... Q9HAW0 39747245
    974100 9fsq:S (3.51) BS03 ZN N/A GO:0000126 ... Q9HAW0 39747245
    974101 9fsq:T (3.51) BS01 dna N/A N/A A6H8Y1 39747245
    974102 9fsq:W (3.51) BS01 dna N/A GO:0000978 ... Q5SXM2 39747245
    974103 9fsq:W (3.51) BS02 dna N/A GO:0000978 ... Q5SXM2 39747245
    974104 9fsq:Z (3.51) BS01 dna N/A GO:0000978 ... Q92966 39747245
    974105 9fsq:Z (3.51) BS02 dna N/A GO:0000978 ... Q92966 39747245
    974106 9fsq:Z (3.51) BS03 ZN N/A GO:0000978 ... Q92966 39747245
    974107 9fsq:Z (3.51) BS04 ZN N/A GO:0000978 ... Q92966 39747245
    974108 9fsr:A (3.76) BS01 dna N/A GO:0000287 ... O14802 39747245
    974109 9fsr:A (3.76) BS02 ZN N/A GO:0000287 ... O14802 39747245
    974110 9fsr:A (3.76) BS03 ZN N/A GO:0000287 ... O14802 39747245
    974111 9fsr:A (3.76) BS04 MG N/A GO:0000287 ... O14802 39747245
    974112 9fsr:B (3.76) BS01 dna N/A GO:0000428 ... Q9NW08 39747245
    974113 9fsr:B (3.76) BS02 ZN N/A GO:0000428 ... Q9NW08 39747245
    974114 9fsr:F (3.76) BS01 dna N/A GO:0003690 ... Q9H1D9 39747245
    974115 9fsr:F (3.76) BS02 SF4 N/A GO:0003690 ... Q9H1D9 39747245
    974116 9fsr:J (3.76) BS01 ZN N/A GO:0003676 ... Q9Y2Y1 39747245
    974117 9fsr:M (3.76) BS01 dna N/A GO:0003677 ... P19388 39747245
    974118 9fsr:P (3.76) BS01 ZN N/A GO:0001650 ... P53803 39747245
    974119 9fsr:Q (3.76) BS01 ZN N/A GO:0003677 ... P62875 39747245
    974120 9fsr:R (3.76) BS01 dna N/A GO:0003677 ... P20226 39747245
    974121 9fsr:R (3.76) BS02 dna N/A GO:0003677 ... P20226 39747245
    974122 9fsr:S (3.76) BS01 dna N/A GO:0000126 ... Q9HAW0 39747245
    974123 9fsr:S (3.76) BS02 dna N/A GO:0000126 ... Q9HAW0 39747245
    974124 9fsr:S (3.76) BS03 ZN N/A GO:0000126 ... Q9HAW0 39747245
    974125 9fsr:T (3.76) BS01 dna N/A N/A A6H8Y1 39747245
    974126 9fsr:T (3.76) BS02 dna N/A N/A A6H8Y1 39747245
    974127 9fsr:W (3.76) BS01 dna N/A GO:0000978 ... Q5SXM2 39747245
    974128 9fsr:W (3.76) BS02 dna N/A GO:0000978 ... Q5SXM2 39747245
    974129 9fsr:Z (3.76) BS01 dna N/A GO:0000978 ... Q92966 39747245
    974130 9fsr:Z (3.76) BS02 dna N/A GO:0000978 ... Q92966 39747245
    974131 9fsr:Z (3.76) BS03 ZN N/A GO:0000978 ... Q92966 39747245
    974132 9fss:A (4.14) BS01 dna N/A GO:0000287 ... O14802 39747245
    974133 9fss:A (4.14) BS02 ZN N/A GO:0000287 ... O14802 39747245
    974134 9fss:A (4.14) BS03 ZN N/A GO:0000287 ... O14802 39747245
    974135 9fss:A (4.14) BS04 MG N/A GO:0000287 ... O14802 39747245
    974136 9fss:B (4.14) BS01 dna N/A GO:0000428 ... Q9NW08 39747245
    974137 9fss:B (4.14) BS02 ZN N/A GO:0000428 ... Q9NW08 39747245
    974138 9fss:F (4.14) BS01 dna N/A GO:0003690 ... Q9H1D9 39747245
    974139 9fss:F (4.14) BS02 SF4 N/A GO:0003690 ... Q9H1D9 39747245
    974140 9fss:J (4.14) BS01 ZN N/A GO:0003676 ... Q9Y2Y1 39747245
    974141 9fss:M (4.14) BS01 dna N/A GO:0003677 ... P19388 39747245
    974142 9fss:P (4.14) BS01 ZN N/A GO:0001650 ... P53803 39747245
    974143 9fss:Q (4.14) BS01 ZN N/A GO:0003677 ... P62875 39747245
    974144 9fss:R (4.14) BS01 dna N/A GO:0003677 ... P20226 39747245
    974145 9fss:R (4.14) BS02 dna N/A GO:0003677 ... P20226 39747245
    974146 9fss:S (4.14) BS01 dna N/A GO:0000126 ... Q9HAW0 39747245
    974147 9fss:S (4.14) BS02 dna N/A GO:0000126 ... Q9HAW0 39747245
    974148 9fss:T (4.14) BS01 dna N/A N/A A6H8Y1 39747245
    974149 9fss:T (4.14) BS02 dna N/A N/A A6H8Y1 39747245
    974150 9fss:W (4.14) BS01 dna N/A GO:0000978 ... Q5SXM2 39747245
    974151 9fss:W (4.14) BS02 dna N/A GO:0000978 ... Q5SXM2 39747245
    974152 9fss:W (4.14) BS03 ZN N/A GO:0000978 ... Q5SXM2 39747245
    974153 9fss:Z (4.14) BS01 dna N/A GO:0000978 ... Q92966 39747245
    974154 9fss:Z (4.14) BS02 dna N/A GO:0000978 ... Q92966 39747245
    974155 9fss:Z (4.14) BS03 ZN N/A GO:0000978 ... Q92966 39747245
    974156 9fss:Z (4.14) BS04 ZN N/A GO:0000978 ... Q92966 39747245
    974157 9fst:G (2.75) BS01 MG N/A GO:0003674 ... P21243 41504611
    974158 9fst:I (2.75) BS01 MG N/A GO:0005515 ... P25451 41504611
    974159 9fst:K (2.75) BS01 A1IF8 N/A GO:0004298 ... P30656 41504611
    974160 9fst:K (2.75) BS02 MG N/A GO:0004298 ... P30656 41504611
    974161 9fst:N (2.75) BS01 A1IF8 N/A GO:0004298 ... P28065
    P38624
    41504611
    974162 9fst:N (2.75) BS02 MG N/A GO:0004298 ... P28065
    P38624
    41504611
    974163 9fst:W (2.75) BS01 MG N/A GO:0005515 ... P25451 41504611
    974164 9fst:Y (2.75) BS01 A1IF8 N/A GO:0004298 ... P30656 41504611
    974165 9fst:Y (2.75) BS02 MG N/A GO:0004298 ... P30656 41504611
    974166 9fst:Z (2.75) BS01 MG N/A GO:0003674 ... P23724 41504611
    974167 9fst:b (2.75) BS01 A1IF8 N/A GO:0004298 ... P28065
    P38624
    41504611
    974168 9fsu:G (2.75) BS01 MG N/A GO:0003674 ... P21243 41504611
    974169 9fsu:I (2.75) BS01 MG N/A GO:0005515 ... P25451 41504611
    974170 9fsu:K (2.75) BS01 MG N/A GO:0004298 ... P30656 41504611
    974171 9fsu:K (2.75) BS02 A1IFL N/A GO:0004298 ... P30656 41504611
    974172 9fsu:N (2.75) BS01 MG N/A GO:0004298 ... P28065
    P38624
    41504611
    974173 9fsu:N (2.75) BS02 A1IFL N/A GO:0004298 ... P28065
    P38624
    41504611
    974174 9fsu:V (2.75) BS01 MG N/A GO:0004298 ... P25043 41504611
    974175 9fsu:W (2.75) BS01 MG N/A GO:0005515 ... P25451 41504611
    974176 9fsu:Y (2.75) BS01 MG N/A GO:0004298 ... P30656 41504611
    974177 9fsu:Y (2.75) BS02 A1IFL N/A GO:0004298 ... P30656 41504611
    974178 9fsu:Z (2.75) BS01 MG N/A GO:0003674 ... P23724 41504611
    974179 9fsu:b (2.75) BS01 A1IFL N/A GO:0004298 ... P28065
    P38624
    41504611
    974180 9fsv:G (2.75) BS01 MG N/A GO:0003674 ... P21243 41504611
    974181 9fsv:H (2.75) BS01 A1IFL N/A GO:0004298 ... P25043
    P40306
    41504611
    974182 9fsv:I (2.75) BS01 MG N/A GO:0005515 ... P25451 41504611
    974183 9fsv:K (2.75) BS01 MG N/A GO:0004298 ... P30656 41504611
    974184 9fsv:K (2.75) BS02 A1IFL N/A GO:0004298 ... P30656 41504611
    974185 9fsv:N (2.75) BS01 MG N/A GO:0004175 ... P38624 41504611
    974186 9fsv:V (2.75) BS01 MG N/A GO:0004298 ... P25043
    P40306
    41504611
    974187 9fsv:V (2.75) BS02 A1IFL N/A GO:0004298 ... P25043
    P40306
    41504611
    974188 9fsv:W (2.75) BS01 MG N/A GO:0005515 ... P25451 41504611
    974189 9fsv:Y (2.75) BS01 MG N/A GO:0004298 ... P30656 41504611
    974190 9fsv:Y (2.75) BS02 A1IFL N/A GO:0004298 ... P30656 41504611
    974191 9fsv:Z (2.75) BS01 MG N/A GO:0003674 ... P23724 41504611
    974192 9ft0:G (2.75) BS01 MG N/A GO:0003674 ... P21243 41504611
    974193 9ft0:H (2.75) BS01 A1IFL N/A GO:0004298 ... P25043 41504611
    974194 9ft0:I (2.75) BS01 MG N/A GO:0005515 ... P25451 41504611
    974195 9ft0:K (2.75) BS01 MG N/A GO:0004298 ... P30656 41504611
    974196 9ft0:K (2.75) BS02 A1IFL N/A GO:0004298 ... P30656 41504611
    974197 9ft0:N (2.75) BS01 MG N/A GO:0004175 ... P38624 41504611
    974198 9ft0:V (2.75) BS01 MG N/A GO:0004298 ... P25043 41504611
    974199 9ft0:V (2.75) BS02 A1IFL N/A GO:0004298 ... P25043 41504611
    974200 9ft0:Y (2.75) BS01 MG N/A GO:0004298 ... P30656 41504611

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).