SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    974801 9fxo:La (2.25) BS01 rna N/A GO:0000463 ... Q4Q8V7 N/A
    974802 9fxo:La (2.25) BS02 rna N/A GO:0000463 ... Q4Q8V7 N/A
    974803 9fxo:Lb (2.25) BS01 rna N/A GO:0002181 ... Q4Q178 N/A
    974804 9fxo:Lb (2.25) BS02 rna N/A GO:0002181 ... Q4Q178 N/A
    974805 9fxo:Lc (2.25) BS01 rna N/A GO:0000463 ... Q4Q9H4 N/A
    974806 9fxo:Lc (2.25) BS02 rna N/A GO:0000463 ... Q4Q9H4 N/A
    974807 9fxo:Ld (2.25) BS01 rna N/A GO:0003723 ... E9AEK1 N/A
    974808 9fxo:Ld (2.25) BS02 rna N/A GO:0003723 ... E9AEK1 N/A
    974809 9fxo:Le (2.25) BS01 rna N/A GO:0002181 ... E9AFF2 N/A
    974810 9fxo:Le (2.25) BS02 rna N/A GO:0002181 ... E9AFF2 N/A
    974811 9fxo:Le (2.25) BS03 rna N/A GO:0002181 ... E9AFF2 N/A
    974812 9fxo:Le (2.25) BS04 rna N/A GO:0002181 ... E9AFF2 N/A
    974813 9fxo:Lf (2.25) BS01 rna N/A GO:0003735 ... Q4QC11 N/A
    974814 9fxo:Lg (2.25) BS01 rna N/A GO:0002181 ... Q4QHL3 N/A
    974815 9fxo:Lg (2.25) BS02 rna N/A GO:0002181 ... Q4QHL3 N/A
    974816 9fxo:Lg (2.25) BS03 rna N/A GO:0002181 ... Q4QHL3 N/A
    974817 9fxo:Lh (2.25) BS01 rna N/A GO:0003735 ... Q4QDP9 N/A
    974818 9fxo:Lh (2.25) BS02 rna N/A GO:0003735 ... Q4QDP9 N/A
    974819 9fxo:Lh (2.25) BS03 rna N/A GO:0003735 ... Q4QDP9 N/A
    974820 9fxo:Lh (2.25) BS04 MG N/A GO:0003735 ... Q4QDP9 N/A
    974821 9fxo:Li (2.25) BS01 rna N/A GO:0002181 ... Q4QCE1 N/A
    974822 9fxo:Li (2.25) BS02 rna N/A GO:0002181 ... Q4QCE1 N/A
    974823 9fxo:Lj (2.25) BS01 rna N/A GO:0000448 ... E9AEH2 N/A
    974824 9fxo:Lj (2.25) BS02 rna N/A GO:0000448 ... E9AEH2 N/A
    974825 9fxo:Lj (2.25) BS03 rna N/A GO:0000448 ... E9AEH2 N/A
    974826 9fxo:Lj (2.25) BS04 ZN N/A GO:0000448 ... E9AEH2 N/A
    974827 9fxo:Lk (2.25) BS01 rna N/A GO:0002181 ... Q4Q8X0 N/A
    974828 9fxo:Lk (2.25) BS02 rna N/A GO:0002181 ... Q4Q8X0 N/A
    974829 9fxo:Lk (2.25) BS03 rna N/A GO:0002181 ... Q4Q8X0 N/A
    974830 9fxo:Ll (2.25) BS01 rna N/A GO:0002181 ... Q4QEQ0 N/A
    974831 9fxo:Ll (2.25) BS02 rna N/A GO:0002181 ... Q4QEQ0 N/A
    974832 9fxo:Ll (2.25) BS03 rna N/A GO:0002181 ... Q4QEQ0 N/A
    974833 9fxo:Lm (2.25) BS01 rna N/A GO:0003729 ... P69201 N/A
    974834 9fxo:Lm (2.25) BS02 rna N/A GO:0003729 ... P69201 N/A
    974835 9fxo:Lm (2.25) BS03 rna N/A GO:0003729 ... P69201 N/A
    974836 9fxo:Ln (2.25) BS01 rna N/A GO:0003735 ... A0A0M9FZM0 N/A
    974837 9fxo:Lo (2.25) BS01 rna N/A GO:0003735 ... Q4QC01 N/A
    974838 9fxo:Lo (2.25) BS02 rna N/A GO:0003735 ... Q4QC01 N/A
    974839 9fxo:Lo (2.25) BS03 rna N/A GO:0003735 ... Q4QC01 N/A
    974840 9fxo:Lo (2.25) BS04 ZN N/A GO:0003735 ... Q4QC01 N/A
    974841 9fxo:Lp (2.25) BS01 rna N/A GO:0002181 ... Q4Q3L3 N/A
    974842 9fxo:Lp (2.25) BS02 rna N/A GO:0002181 ... Q4Q3L3 N/A
    974843 9fxo:Lp (2.25) BS03 rna N/A GO:0002181 ... Q4Q3L3 N/A
    974844 9fxo:Lp (2.25) BS04 ZN N/A GO:0002181 ... Q4Q3L3 N/A
    974845 9fxo:SA (2.25) BS01 rna N/A GO:0003735 ... Q4FX73 N/A
    974846 9fxo:SB (2.25) BS01 rna N/A GO:0000028 ... Q4Q0Q0 N/A
    974847 9fxo:SC (2.25) BS01 rna N/A GO:0003723 ... Q4Q4A0 N/A
    974848 9fxo:SD (2.25) BS01 rna N/A GO:0003723 ... Q4QIM3 N/A
    974849 9fxo:SE (2.25) BS01 rna N/A GO:0003723 ... Q4QG31 N/A
    974850 9fxo:SF (2.25) BS01 rna N/A GO:0003723 ... Q4QDL5 N/A
    974851 9fxo:SG (2.25) BS01 rna N/A GO:0003735 ... Q9NE83 N/A
    974852 9fxo:SH (2.25) BS01 rna N/A GO:0003729 ... Q868B1 N/A
    974853 9fxo:SH (2.25) BS02 rna N/A GO:0003729 ... Q868B1 N/A
    974854 9fxo:SI (2.25) BS01 rna N/A GO:0003735 ... E9AC32 N/A
    974855 9fxo:SJ (2.25) BS01 rna N/A GO:0003735 ... Q4QGW3 N/A
    974856 9fxo:SK (2.25) BS01 rna N/A GO:0002181 ... P25204 N/A
    974857 9fxo:SK (2.25) BS02 rna N/A GO:0002181 ... P25204 N/A
    974858 9fxo:SK (2.25) BS03 rna N/A GO:0002181 ... P25204 N/A
    974859 9fxo:SL (2.25) BS01 rna N/A GO:0000462 ... Q4Q9A5 N/A
    974860 9fxo:SM (2.25) BS01 rna N/A GO:0003735 ... Q4Q8G4 N/A
    974861 9fxo:SN (2.25) BS01 rna N/A GO:0003723 ... Q4Q1X7 N/A
    974862 9fxo:SO (2.25) BS01 rna N/A GO:0000028 ... Q4Q8H1 N/A
    974863 9fxo:SO (2.25) BS02 MG N/A GO:0000028 ... Q4Q8H1 N/A
    974864 9fxo:SP (2.25) BS01 rna N/A GO:0003735 ... Q4QC89 N/A
    974865 9fxo:SQ (2.25) BS01 rna N/A GO:0003735 ... Q4QG97 N/A
    974866 9fxo:SR (2.25) BS01 rna N/A GO:0003676 ... Q4Q1Y3 N/A
    974867 9fxo:SS (2.25) BS01 rna N/A GO:0002181 ... Q4Q817 N/A
    974868 9fxo:SS (2.25) BS02 ZN N/A GO:0002181 ... Q4Q817 N/A
    974869 9fxo:ST (2.25) BS01 rna N/A GO:0000462 ... Q4Q3M1 N/A
    974870 9fxo:ST (2.25) BS02 rna N/A GO:0000462 ... Q4Q3M1 N/A
    974871 9fxo:ST (2.25) BS03 rna N/A GO:0000462 ... Q4Q3M1 N/A
    974872 9fxo:SU (2.25) BS01 rna N/A GO:0003735 ... N/A N/A
    974873 9fxo:SV (2.25) BS01 rna N/A GO:0003735 ... Q4Q806 N/A
    974874 9fxo:SW (2.25) BS01 rna N/A GO:0003723 ... Q4QBV0 N/A
    974875 9fxo:SX (2.25) BS01 rna N/A GO:0003735 ... E9AEE8 N/A
    974876 9fxo:SX (2.25) BS02 MG N/A GO:0003735 ... E9AEE8 N/A
    974877 9fxo:SY (2.25) BS01 rna N/A GO:0000447 ... Q4QH01 N/A
    974878 9fxo:SZ (2.25) BS01 rna N/A GO:0002181 ... Q4Q1D2 N/A
    974879 9fxo:Sa (2.25) BS01 rna N/A GO:0003735 ... Q4Q9X4 N/A
    974880 9fxo:Sa (2.25) BS02 rna N/A GO:0003735 ... Q4Q9X4 N/A
    974881 9fxo:Sb (2.25) BS01 rna N/A GO:0003729 ... Q4Q8L6 N/A
    974882 9fxo:Sb (2.25) BS02 MG N/A GO:0003729 ... Q4Q8L6 N/A
    974883 9fxo:Sb (2.25) BS03 ZN N/A GO:0003729 ... Q4Q8L6 N/A
    974884 9fxo:Sb (2.25) BS04 MG N/A GO:0003729 ... Q4Q8L6 N/A
    974885 9fxo:Sc (2.25) BS01 rna N/A GO:0003735 ... Q4Q140 N/A
    974886 9fxo:Sd (2.25) BS01 rna N/A GO:0000028 ... Q4Q931 N/A
    974887 9fxo:Se (2.25) BS01 rna N/A GO:0003735 ... Q4Q7P0 N/A
    974888 9fxo:Sf (2.25) BS01 rna N/A GO:0003729 ... Q4QFK7 N/A
    974889 9fxo:Sh (2.25) BS01 rna N/A GO:0003676 ... Q4Q5K7 N/A
    974890 9fxp:A (1.88) BS01 5WX N/A N/A O60885 39069741
    974891 9fxq:A (3.1) BS01 FAD N/A GO:0001735 ... A0A7N4P0D0 39322016
    974892 9fxr:A (2.303) BS01 PYR N/A GO:0008840 ... C3KFM9 39793398
    974893 9fxr:B (2.303) BS01 PYR N/A GO:0008840 ... C3KFM9 39793398
    974894 9fxr:B (2.303) BS02 PO4 N/A GO:0008840 ... C3KFM9 39793398
    974895 9fxr:C (2.303) BS01 PYR N/A GO:0008840 ... C3KFM9 39793398
    974896 9fxr:C (2.303) BS02 PO4 N/A GO:0008840 ... C3KFM9 39793398
    974897 9fxr:D (2.303) BS01 PYR N/A GO:0008840 ... C3KFM9 39793398
    974898 9fxr:H (2.303) BS01 PYR N/A GO:0008840 ... C3KFM9 39793398
    974899 9fxr:J (2.303) BS01 PO4 N/A GO:0008840 ... C3KFM9 39793398
    974900 9fxr:J (2.303) BS02 PYR N/A GO:0008840 ... C3KFM9 39793398
    974901 9fxr:L (2.303) BS01 PYR N/A GO:0008840 ... C3KFM9 39793398
    974902 9fxr:N (2.303) BS01 PYR N/A GO:0008840 ... C3KFM9 39793398
    974903 9fxt:H (2.3) BS01 SIA N/A N/A N/A 39886580
    974904 9fxt:I (2.3) BS01 SIA N/A N/A N/A 39886580
    974905 9fxt:L (2.3) BS01 SIA N/A N/A N/A 39886580
    974906 9fxt:M (2.3) BS01 SIA N/A N/A N/A 39886580
    974907 9fxu:A (2.25) BS01 A1IGZ N/A GO:0001953 ... Q64610 40233422
    974908 9fxu:A (2.25) BS02 ZN N/A GO:0001953 ... Q64610 40233422
    974909 9fxu:A (2.25) BS03 ZN N/A GO:0001953 ... Q64610 40233422
    974910 9fxu:A (2.25) BS04 CA N/A GO:0001953 ... Q64610 40233422
    974911 9fxv:A (2.3) BS01 peptide N/A GO:0003723 ... D4HI62 N/A
    974912 9fxw:A (1.95) BS01 MAN N/A GO:0001953 ... Q64610 40233422
    974913 9fxw:A (1.95) BS02 ZN N/A GO:0001953 ... Q64610 40233422
    974914 9fxw:A (1.95) BS03 ZN N/A GO:0001953 ... Q64610 40233422
    974915 9fxw:A (1.95) BS04 CA N/A GO:0001953 ... Q64610 40233422
    974916 9fxw:A (1.95) BS05 A1IG0 N/A GO:0001953 ... Q64610 40233422
    974917 9fxx:A (2.16) BS01 peptide N/A GO:0003723 ... D4HI62 N/A
    974918 9fxx:A (2.16) BS02 A1IG4 N/A GO:0003723 ... D4HI62 N/A
    974919 9fxy:A (2.0) BS01 ZN N/A GO:0001953 ... Q64610 40233422
    974920 9fxy:A (2.0) BS02 ZN N/A GO:0001953 ... Q64610 40233422
    974921 9fxy:A (2.0) BS03 CA N/A GO:0001953 ... Q64610 40233422
    974922 9fxy:A (2.0) BS04 A1IG1 N/A GO:0001953 ... Q64610 40233422
    974923 9fxz:A (1.3) BS01 V19 N/A GO:0005178 ... O00214 39140038
    974924 9fxz:B (1.3) BS01 V19 N/A GO:0005178 ... O00214 39140038
    974925 9fy0:3 (2.9) BS01 rna N/A GO:0001682 ... P55858 39753558
    974926 9fy0:A (2.9) BS01 rna N/A GO:0003735 ... Q9UXD4 39753558
    974927 9fy0:B (2.9) BS01 rna N/A GO:0000028 ... P95993 39753558
    974928 9fy0:C (2.9) BS01 rna N/A GO:0005737 ... Q980V0 39753558
    974929 9fy0:C (2.9) BS02 ZN N/A GO:0005737 ... Q980V0 39753558
    974930 9fy0:C (2.9) BS03 ZN N/A GO:0005737 ... Q980V0 39753558
    974931 9fy0:D (2.9) BS01 rna N/A GO:0003723 ... P95987 39753558
    974932 9fy0:E (2.9) BS01 rna N/A GO:0003723 ... Q9UX94 39753558
    974933 9fy0:F (2.9) BS01 rna N/A GO:0003723 ... Q9UX87 39753558
    974934 9fy0:F (2.9) BS02 ZN N/A GO:0003723 ... Q9UX87 39753558
    974935 9fy0:G (2.9) BS01 rna N/A GO:0003735 ... Q980A6 39753558
    974936 9fy0:H (2.9) BS01 rna N/A GO:0003723 ... P35026 39753558
    974937 9fy0:I (2.9) BS01 rna N/A GO:0003735 ... Q9UX92 39753558
    974938 9fy0:J (2.9) BS01 rna N/A GO:0002181 ... Q980W3 39753558
    974939 9fy0:K (2.9) BS01 rna N/A GO:0000462 ... P95992 39753558
    974940 9fy0:L (2.9) BS01 rna N/A GO:0000049 ... P35027 39753558
    974941 9fy0:M (2.9) BS01 rna N/A GO:0003735 ... P95988 39753558
    974942 9fy0:N (2.9) BS01 rna N/A GO:0003735 ... P39573 39753558
    974943 9fy0:O (2.9) BS01 rna N/A GO:0003676 ... P95986 39753558
    974944 9fy0:P (2.9) BS01 rna N/A GO:0002181 ... Q97ZQ5 39753558
    974945 9fy0:P (2.9) BS02 ZN N/A GO:0002181 ... Q97ZQ5 39753558
    974946 9fy0:Q (2.9) BS01 rna N/A GO:0000462 ... Q980A8 39753558
    974947 9fy0:R (2.9) BS01 rna N/A GO:0003735 ... Q9UX98 39753558
    974948 9fy0:R (2.9) BS02 ZN N/A GO:0003735 ... Q9UX98 39753558
    974949 9fy0:S (2.9) BS01 rna N/A GO:0003735 ... Q980K7 39753558
    974950 9fy0:T (2.9) BS01 rna N/A GO:0003723 ... Q9UXA3 39753558
    974951 9fy0:T (2.9) BS02 rna N/A GO:0003723 ... Q9UXA3 39753558
    974952 9fy0:U (2.9) BS01 rna N/A GO:0003735 ... Q980F7 39753558
    974953 9fy0:V (2.9) BS01 rna N/A GO:0002181 ... Q97ZY6 39753558
    974954 9fy0:W (2.9) BS01 rna N/A GO:0003735 ... Q97Z80 39753558
    974955 9fy0:W (2.9) BS02 ZN N/A GO:0003735 ... Q97Z80 39753558
    974956 9fy0:X (2.9) BS01 rna N/A GO:0000028 ... Q980Q5 39753558
    974957 9fy0:Y (2.9) BS01 rna N/A GO:0003735 ... Q97ZY7 39753558
    974958 9fy0:Z (2.9) BS01 rna N/A GO:0003676 ... Q9UXA0 39753558
    974959 9fy0:a (2.9) BS01 rna N/A GO:0005737 ... Q97ZK4 39753558
    974960 9fy0:a (2.9) BS02 ZN N/A GO:0005737 ... Q97ZK4 39753558
    974961 9fy0:a (2.9) BS03 ZN N/A GO:0005737 ... Q97ZK4 39753558
    974962 9fy0:b (2.9) BS01 rna N/A GO:0003729 ... Q97ZR1 39753558
    974963 9fy0:b (2.9) BS02 ZN N/A GO:0003729 ... Q97ZR1 39753558
    974964 9fy0:c (2.9) BS01 rna N/A GO:0003735 ... Q97ZZ6 39753558
    974965 9fy0:e (2.9) BS01 rna N/A GO:0003735 ... Q97ZH4 39753558
    974966 9fy1:0 (2.3) BS01 rna N/A GO:0003735 ... O34687 N/A
    974967 9fy1:0 (2.3) BS02 ZN N/A GO:0003735 ... O34687 N/A
    974968 9fy1:1 (2.3) BS01 rna N/A GO:0005737 ... P56849 N/A
    974969 9fy1:2 (2.3) BS01 rna N/A GO:0006412 ... P05647 N/A
    974970 9fy1:3 (2.3) BS01 rna N/A GO:0003735 ... P55874 N/A
    974971 9fy1:4 (2.3) BS01 rna N/A GO:0005737 ... P20278 N/A
    974972 9fy1:4 (2.3) BS02 ZN N/A GO:0005737 ... P20278 N/A
    974973 9fy1:5 (2.3) BS01 rna N/A N/A A0A9Q7T0I1 N/A
    974974 9fy1:6 (2.3) BS01 rna N/A GO:0003735 ... Q03223 N/A
    974975 9fy1:6 (2.3) BS02 ZN N/A GO:0003735 ... Q03223 N/A
    974976 9fy1:8 (2.3) BS01 rna N/A GO:0005737 ... P28367 N/A
    974977 9fy1:8 (2.3) BS02 rna N/A GO:0005737 ... P28367 N/A
    974978 9fy1:8 (2.3) BS03 rna N/A GO:0005737 ... P28367 N/A
    974979 9fy1:8 (2.3) BS04 rna N/A GO:0005737 ... P28367 N/A
    974980 9fy1:C (2.3) BS01 rna N/A GO:0002181 ... P42919 N/A
    974981 9fy1:D (2.3) BS01 rna N/A GO:0003735 ... P42920 N/A
    974982 9fy1:E (2.3) BS01 rna N/A GO:0003735 ... P42921 N/A
    974983 9fy1:F (2.3) BS01 rna N/A GO:0000049 ... P12877 N/A
    974984 9fy1:F (2.3) BS02 rna N/A GO:0000049 ... P12877 N/A
    974985 9fy1:F (2.3) BS03 rna N/A GO:0000049 ... P12877 N/A
    974986 9fy1:G (2.3) BS01 rna N/A GO:0002181 ... P46898 N/A
    974987 9fy1:J (2.3) BS01 rna N/A GO:0003729 ... P70974 N/A
    974988 9fy1:K (2.3) BS01 rna N/A GO:0003735 ... P12875 N/A
    974989 9fy1:K (2.3) BS02 rna N/A GO:0003735 ... P12875 N/A
    974990 9fy1:L (2.3) BS01 rna N/A GO:0003735 ... P19946 N/A
    974991 9fy1:M (2.3) BS01 rna N/A GO:0003735 ... P14577 N/A
    974992 9fy1:M (2.3) BS02 rna N/A GO:0003735 ... P14577 N/A
    974993 9fy1:N (2.3) BS01 rna N/A GO:0003735 ... P20277 N/A
    974994 9fy1:O (2.3) BS01 rna N/A GO:0005737 ... P46899 N/A
    974995 9fy1:O (2.3) BS02 rna N/A GO:0005737 ... P46899 N/A
    974996 9fy1:P (2.3) BS01 rna N/A GO:0003735 ... O31742 N/A
    974997 9fy1:P (2.3) BS02 rna N/A GO:0003735 ... O31742 N/A
    974998 9fy1:Q (2.3) BS01 rna N/A GO:0000027 ... P55873 N/A
    974999 9fy1:R (2.3) BS01 rna N/A GO:0003735 ... P26908 N/A
    975000 9fy1:S (2.3) BS01 rna N/A GO:0003735 ... P42060 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).