SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    976001 9g2m:B (3.23) BS02 AOV N/A GO:0005524 ... G7CBF6 39880813
    976002 9g2m:B (3.23) BS03 MG N/A GO:0005524 ... G7CBF6 39880813
    976003 9g2p:A (2.5) BS01 ATP N/A GO:0005524 ... G7CBF5 39880813
    976004 9g2p:A (2.5) BS02 MG N/A GO:0005524 ... G7CBF5 39880813
    976005 9g2p:A (2.5) BS03 ZN N/A GO:0005524 ... G7CBF5 39880813
    976006 9g2p:A (2.5) BS04 ATP N/A GO:0005524 ... G7CBF5 39880813
    976007 9g2p:B (2.5) BS01 ATP N/A GO:0005524 ... G7CBF6 39880813
    976008 9g2p:B (2.5) BS02 MG N/A GO:0005524 ... G7CBF6 39880813
    976009 9g2p:B (2.5) BS03 ATP N/A GO:0005524 ... G7CBF6 39880813
    976010 9g2s:A (2.9) BS01 ATP N/A GO:0005524 ... G7CBF5 39880813
    976011 9g2s:A (2.9) BS02 MG N/A GO:0005524 ... G7CBF5 39880813
    976012 9g2s:A (2.9) BS03 ATP N/A GO:0005524 ... G7CBF5 39880813
    976013 9g2s:B (2.9) BS01 ATP N/A GO:0005524 ... G7CBF6 39880813
    976014 9g2s:B (2.9) BS02 ATP N/A GO:0005524 ... G7CBF6 39880813
    976015 9g2s:B (2.9) BS03 MG N/A GO:0005524 ... G7CBF6 39880813
    976016 9g2t:A (3.15) BS01 ATP N/A GO:0005524 ... G7CBF5 39880813
    976017 9g2t:A (3.15) BS02 MG N/A GO:0005524 ... G7CBF5 39880813
    976018 9g2t:A (3.15) BS03 ATP N/A GO:0005524 ... G7CBF5 39880813
    976019 9g2t:B (3.15) BS01 ATP N/A GO:0005524 ... G7CBF6 39880813
    976020 9g2t:B (3.15) BS02 ATP N/A GO:0005524 ... G7CBF6 39880813
    976021 9g2t:B (3.15) BS03 MG N/A GO:0005524 ... G7CBF6 39880813
    976022 9g2v:A (3.35) BS01 ADP N/A GO:0005524 ... G7CBF5 39880813
    976023 9g2v:A (3.35) BS02 ZN N/A GO:0005524 ... G7CBF5 39880813
    976024 9g2v:B (3.35) BS01 ADP N/A GO:0005524 ... G7CBF6 39880813
    976025 9g2x:A (2.85) BS01 ATP N/A GO:0005524 ... G7CBF5 39880813
    976026 9g2x:A (2.85) BS02 MG N/A GO:0005524 ... G7CBF5 39880813
    976027 9g2x:A (2.85) BS03 ZN N/A GO:0005524 ... G7CBF5 39880813
    976028 9g2x:A (2.85) BS04 ATP N/A GO:0005524 ... G7CBF5 39880813
    976029 9g2x:B (2.85) BS01 ATP N/A GO:0005524 ... G7CBF6 39880813
    976030 9g2x:B (2.85) BS02 ATP N/A GO:0005524 ... G7CBF6 39880813
    976031 9g2x:B (2.85) BS03 MG N/A GO:0005524 ... G7CBF6 39880813
    976032 9g2y:A (3.6) BS01 ADP N/A GO:0005524 ... G7CBF5 39880813
    976033 9g2y:B (3.6) BS01 ADP N/A GO:0005524 ... G7CBF6 39880813
    976034 9g2z:A (2.78) BS01 ATP N/A GO:0005524 ... G7CBF5 39880813
    976035 9g2z:A (2.78) BS02 MG N/A GO:0005524 ... G7CBF5 39880813
    976036 9g2z:A (2.78) BS03 ZN N/A GO:0005524 ... G7CBF5 39880813
    976037 9g2z:A (2.78) BS04 ATP N/A GO:0005524 ... G7CBF5 39880813
    976038 9g2z:B (2.78) BS01 ATP N/A GO:0005524 ... G7CBF6 39880813
    976039 9g2z:B (2.78) BS02 ATP N/A GO:0005524 ... G7CBF6 39880813
    976040 9g2z:B (2.78) BS03 MG N/A GO:0005524 ... G7CBF6 39880813
    976041 9g30:0 (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PLC9 40273100
    976042 9g30:0 (2.35) BS02 rna N/A GO:0002181 ... A0A1D8PLC9 40273100
    976043 9g30:2 (2.35) BS01 rna N/A GO:0003735 ... A0A1D8PGY0 40273100
    976044 9g30:2 (2.35) BS02 rna N/A GO:0003735 ... A0A1D8PGY0 40273100
    976045 9g30:6 (2.35) BS01 rna N/A GO:0003735 ... A0A1D8PPT5 40273100
    976046 9g30:6 (2.35) BS02 rna N/A GO:0003735 ... A0A1D8PPT5 40273100
    976047 9g30:7 (2.35) BS01 rna N/A GO:0002181 ... Q5A6A1 40273100
    976048 9g30:8 (2.35) BS01 rna N/A GO:0000027 ... A0A1D8PPS1 40273100
    976049 9g30:8 (2.35) BS02 rna N/A GO:0000027 ... A0A1D8PPS1 40273100
    976050 9g30:9 (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PCQ5 40273100
    976051 9g30:9 (2.35) BS02 rna N/A GO:0002181 ... A0A1D8PCQ5 40273100
    976052 9g30:9 (2.35) BS03 GET N/A GO:0002181 ... A0A1D8PCQ5 40273100
    976053 9g30:AA (2.35) BS01 rna N/A GO:0003735 ... A0A1D8PFG4 40273100
    976054 9g30:AB (2.35) BS01 rna N/A GO:0003723 ... A0A1D8PSC5 40273100
    976055 9g30:AC (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PF57 40273100
    976056 9g30:AD (2.35) BS01 rna N/A GO:0003674 ... A0A1D8PM75 40273100
    976057 9g30:AE (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PHF5 40273100
    976058 9g30:AF (2.35) BS01 rna N/A GO:0003735 ... A0A1D8PPN6 40273100
    976059 9g30:AG (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PHH4 40273100
    976060 9g30:AH (2.35) BS01 rna N/A GO:0003735 ... A0A1D8PDZ1 40273100
    976061 9g30:AH (2.35) BS02 ZN N/A GO:0003735 ... A0A1D8PDZ1 40273100
    976062 9g30:AI (2.35) BS01 rna N/A GO:0000463 ... A0A1D8PK30 40273100
    976063 9g30:AI (2.35) BS02 rna N/A GO:0000463 ... A0A1D8PK30 40273100
    976064 9g30:AJ (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PH21 40273100
    976065 9g30:AK (2.35) BS01 rna N/A GO:0000448 ... A0A1D8PF45 40273100
    976066 9g30:AK (2.35) BS02 rna N/A GO:0000448 ... A0A1D8PF45 40273100
    976067 9g30:AK (2.35) BS03 ZN N/A GO:0000448 ... A0A1D8PF45 40273100
    976068 9g30:AL (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PG16 40273100
    976069 9g30:AM (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PDT4 40273100
    976070 9g30:AM (2.35) BS02 rna N/A GO:0002181 ... A0A1D8PDT4 40273100
    976071 9g30:AN (2.35) BS01 rna N/A GO:0003735 ... A0A1D8PL68 40273100
    976072 9g30:AN (2.35) BS02 ZN N/A GO:0003735 ... A0A1D8PL68 40273100
    976073 9g30:AP (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PEV4 40273100
    976074 9g30:AP (2.35) BS02 ZN N/A GO:0002181 ... A0A1D8PEV4 40273100
    976075 9g30:AQ (2.35) BS01 rna N/A GO:0003735 ... A0A1D8PP14 40273100
    976076 9g30:AQ (2.35) BS02 ZN N/A GO:0003735 ... A0A1D8PP14 40273100
    976077 9g30:B (2.35) BS01 rna N/A GO:0000028 ... O42817 40273100
    976078 9g30:C (2.35) BS01 rna N/A GO:0003735 ... P40910 40273100
    976079 9g30:D (2.35) BS01 rna N/A GO:0000054 ... Q5A900 40273100
    976080 9g30:E (2.35) BS01 rna N/A GO:0003723 ... A0A1D8PSV5 40273100
    976081 9g30:F (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PCI6 40273100
    976082 9g30:G (2.35) BS01 rna N/A GO:0003723 ... Q5AG43 40273100
    976083 9g30:H (2.35) BS01 rna N/A GO:0003674 ... A0A1D8PL99 40273100
    976084 9g30:I (2.35) BS01 rna N/A GO:0003735 ... Q5AJ93 40273100
    976085 9g30:J (2.35) BS01 rna N/A GO:0002181 ... Q59T44 40273100
    976086 9g30:J (2.35) BS02 rna N/A GO:0002181 ... Q59T44 40273100
    976087 9g30:K (2.35) BS01 rna N/A GO:0003723 ... A0A1D8PGY8 40273100
    976088 9g30:L (2.35) BS01 rna N/A GO:0003674 ... A0A1D8PI15 40273100
    976089 9g30:M (2.35) BS01 rna N/A GO:0003674 ... A0A1D8PN83 40273100
    976090 9g30:N (2.35) BS01 rna N/A GO:0000028 ... Q5ADQ6 40273100
    976091 9g30:O (2.35) BS01 rna N/A GO:0000462 ... A0A1D8PPE0 40273100
    976092 9g30:O (2.35) BS02 rna N/A GO:0000462 ... A0A1D8PPE0 40273100
    976093 9g30:P (2.35) BS01 rna N/A GO:0000028 ... A0A1D8PDT3 40273100
    976094 9g30:Q (2.35) BS01 rna N/A GO:0003723 ... A0A1D8PK22 40273100
    976095 9g30:R (2.35) BS01 rna N/A GO:0000462 ... A0A1D8PCW6 40273100
    976096 9g30:S (2.35) BS01 rna N/A GO:0000028 ... A0A1D8PEY9 40273100
    976097 9g30:T (2.35) BS01 rna N/A GO:0000054 ... A0A1D8PQQ5 40273100
    976098 9g30:U (2.35) BS01 rna N/A GO:0003674 ... A0A1D8PK61 40273100
    976099 9g30:V (2.35) BS01 rna N/A GO:0000462 ... Q5A389 40273100
    976100 9g30:W (2.35) BS01 rna N/A GO:0000447 ... A0A1D8PCG7 40273100
    976101 9g30:X (2.35) BS01 rna N/A GO:0003674 ... Q96W54 40273100
    976102 9g30:Y (2.35) BS01 rna N/A GO:0003674 ... A0A1D8PDU3 40273100
    976103 9g30:Z (2.35) BS01 rna N/A GO:0002181 ... Q5A7K0 40273100
    976104 9g30:a (2.35) BS01 rna N/A GO:0003674 ... A0A1D8PNQ6 40273100
    976105 9g30:b (2.35) BS01 rna N/A GO:0003729 ... Q5ALV6 40273100
    976106 9g30:b (2.35) BS02 ZN N/A GO:0003729 ... Q5ALV6 40273100
    976107 9g30:c (2.35) BS01 rna N/A GO:0003674 ... A0A1D8PTI7 40273100
    976108 9g30:d (2.35) BS01 rna N/A GO:0000028 ... A0A1D8PQN0 40273100
    976109 9g30:e (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PTR4 40273100
    976110 9g30:e (2.35) BS02 ZN N/A GO:0002181 ... A0A1D8PTR4 40273100
    976111 9g30:f (2.35) BS01 rna N/A GO:0003735 ... A0A1D8PSK2 40273100
    976112 9g30:g (2.35) BS01 rna N/A GO:0000028 ... Q5A109 40273100
    976113 9g30:h (2.35) BS01 rna N/A GO:0001403 ... P83774 40273100
    976114 9g30:j (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PF08 40273100
    976115 9g30:k (2.35) BS01 rna N/A GO:0000027 ... Q59LS1 40273100
    976116 9g30:l (2.35) BS01 rna N/A GO:0003723 ... A0A1D8PFV1 40273100
    976117 9g30:l (2.35) BS02 rna N/A GO:0003723 ... A0A1D8PFV1 40273100
    976118 9g30:m (2.35) BS01 rna N/A GO:0000027 ... Q5AGZ7 40273100
    976119 9g30:m (2.35) BS02 rna N/A GO:0000027 ... Q5AGZ7 40273100
    976120 9g30:n (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PCX8 40273100
    976121 9g30:o (2.35) BS01 rna N/A GO:0000463 ... A0A1D8PDL6 40273100
    976122 9g30:o (2.35) BS02 rna N/A GO:0000463 ... A0A1D8PDL6 40273100
    976123 9g30:p (2.35) BS01 rna N/A GO:0000470 ... Q5ANA1 40273100
    976124 9g30:p (2.35) BS02 rna N/A GO:0000470 ... Q5ANA1 40273100
    976125 9g30:p (2.35) BS03 GET N/A GO:0000470 ... Q5ANA1 40273100
    976126 9g30:q (2.35) BS01 rna N/A GO:0002181 ... Q5AEN2 40273100
    976127 9g30:r (2.35) BS01 rna N/A GO:0003735 ... Q5AIB8 40273100
    976128 9g30:r (2.35) BS02 rna N/A GO:0003735 ... Q5AIB8 40273100
    976129 9g30:s (2.35) BS01 rna N/A GO:0003723 ... A0A1D8PHW1 40273100
    976130 9g30:s (2.35) BS02 rna N/A GO:0003723 ... A0A1D8PHW1 40273100
    976131 9g30:t (2.35) BS01 rna N/A GO:0003723 ... O59931 40273100
    976132 9g30:t (2.35) BS02 rna N/A GO:0003723 ... O59931 40273100
    976133 9g30:u (2.35) BS01 rna N/A GO:0003723 ... A0A1D8PFL9 40273100
    976134 9g30:v (2.35) BS01 rna N/A GO:0002181 ... Q5A6R1 40273100
    976135 9g30:v (2.35) BS02 rna N/A GO:0002181 ... Q5A6R1 40273100
    976136 9g30:w (2.35) BS01 rna N/A GO:0003729 ... Q5AB87 40273100
    976137 9g30:x (2.35) BS01 rna N/A GO:0002181 ... Q59TE0 40273100
    976138 9g30:x (2.35) BS02 rna N/A GO:0002181 ... Q59TE0 40273100
    976139 9g30:y (2.35) BS01 rna N/A GO:0002181 ... A0A1D8PK43 40273100
    976140 9g30:z (2.35) BS01 rna N/A GO:0003723 ... A0A1D8PK40 40273100
    976141 9g30:z (2.35) BS02 rna N/A GO:0003723 ... A0A1D8PK40 40273100
    976142 9g33:CB (3.05) BS01 rna N/A GO:0000451 ... P15646 40399280
    976143 9g33:CD (3.05) BS01 rna N/A GO:0000154 ... Q12460 40399280
    976144 9g33:CD (3.05) BS02 rna N/A GO:0000154 ... Q12460 40399280
    976145 9g33:CE (3.05) BS01 rna N/A GO:0000447 ... Q12499 40399280
    976146 9g33:CE (3.05) BS02 rna N/A GO:0000447 ... Q12499 40399280
    976147 9g33:CF (3.05) BS01 rna N/A GO:0000245 ... P39990 40399280
    976148 9g33:CG (3.05) BS01 rna N/A GO:0000245 ... P39990 40399280
    976149 9g33:CH (3.05) BS01 rna N/A GO:0000447 ... Q06506 40399280
    976150 9g33:CI (3.05) BS01 rna N/A GO:0003723 ... P32899 40399280
    976151 9g33:CI (3.05) BS02 rna N/A GO:0003723 ... P32899 40399280
    976152 9g33:CJ (3.05) BS01 rna N/A GO:0005515 ... P53941 40399280
    976153 9g33:CJ (3.05) BS02 rna N/A GO:0005515 ... P53941 40399280
    976154 9g33:CK (3.05) BS01 rna N/A GO:0000447 ... P47083 40399280
    976155 9g33:CL (3.05) BS01 rna N/A GO:0000462 ... Q08965 40399280
    976156 9g33:CL (3.05) BS02 rna N/A GO:0000462 ... Q08965 40399280
    976157 9g33:CL (3.05) BS03 rna N/A GO:0000462 ... Q08965 40399280
    976158 9g33:CL (3.05) BS04 GTP N/A GO:0000462 ... Q08965 40399280
    976159 9g33:CM (3.05) BS01 rna N/A GO:0000447 ... Q08096 40399280
    976160 9g33:DE (3.05) BS01 rna N/A GO:0002181 ... P0CX35 40399280
    976161 9g33:DF (3.05) BS01 rna N/A GO:0000054 ... P26783 40399280
    976162 9g33:DG (3.05) BS01 rna N/A GO:0000462 ... P0CX37 40399280
    976163 9g33:DI (3.05) BS01 rna N/A GO:0000462 ... P0CX39 40399280
    976164 9g33:DJ (3.05) BS01 rna N/A GO:0000462 ... O13516 40399280
    976165 9g33:DL (3.05) BS01 rna N/A GO:0000028 ... P0CX47 40399280
    976166 9g33:DQ (3.05) BS01 rna N/A GO:0000462 ... P0CX51 40399280
    976167 9g33:DQ (3.05) BS02 rna N/A GO:0000462 ... P0CX51 40399280
    976168 9g33:DX (3.05) BS01 rna N/A GO:0000462 ... P0CX29 40399280
    976169 9g33:DY (3.05) BS01 rna N/A GO:0000462 ... P0CX31 40399280
    976170 9g33:Dc (3.05) BS01 rna N/A GO:0000028 ... Q3E7X9 40399280
    976171 9g33:JA (3.05) BS01 rna N/A GO:0000049 ... P53914 40399280
    976172 9g33:JC (3.05) BS01 rna N/A GO:0000462 ... P48234 40399280
    976173 9g33:JE (3.05) BS01 rna N/A GO:0000447 ... P40079 40399280
    976174 9g33:JG (3.05) BS01 rna N/A GO:0000447 ... Q06287 40399280
    976175 9g33:JH (3.05) BS01 rna N/A GO:0000447 ... P38333 40399280
    976176 9g33:JK (3.05) BS01 rna N/A GO:0000462 ... Q06631 40399280
    976177 9g33:JM (3.05) BS01 rna N/A GO:0000447 ... Q12035 40399280
    976178 9g33:JM (3.05) BS02 rna N/A GO:0000447 ... Q12035 40399280
    976179 9g33:JN (3.05) BS01 rna N/A GO:0000462 ... P40546 40399280
    976180 9g33:JN (3.05) BS02 rna N/A GO:0000462 ... P40546 40399280
    976181 9g33:JN (3.05) BS03 rna N/A GO:0000462 ... P40546 40399280
    976182 9g33:JO (3.05) BS01 rna N/A GO:0000447 ... P25586 40399280
    976183 9g33:JP (3.05) BS01 rna N/A GO:0000462 ... P33750 40399280
    976184 9g33:JP (3.05) BS02 rna N/A GO:0000462 ... P33750 40399280
    976185 9g33:JP (3.05) BS03 rna N/A GO:0000462 ... P33750 40399280
    976186 9g33:JQ (3.05) BS01 rna N/A GO:0003674 ... P40470 40399280
    976187 9g33:UA (3.05) BS01 rna N/A GO:0000028 ... P25635 40399280
    976188 9g33:UA (3.05) BS02 rna N/A GO:0000028 ... P25635 40399280
    976189 9g33:UA (3.05) BS03 rna N/A GO:0000028 ... P25635 40399280
    976190 9g33:UB (3.05) BS01 rna N/A GO:0000028 ... Q99207 40399280
    976191 9g33:UB (3.05) BS02 rna N/A GO:0000028 ... Q99207 40399280
    976192 9g33:UC (3.05) BS01 rna N/A GO:0000447 ... Q12136 40399280
    976193 9g33:UD (3.05) BS01 rna N/A GO:0000462 ... Q06679 40399280
    976194 9g33:UE (3.05) BS01 rna N/A GO:0000462 ... Q04177 40399280
    976195 9g33:UF (3.05) BS01 rna N/A GO:0000447 ... Q02354 40399280
    976196 9g33:UG (3.05) BS01 rna N/A GO:0000447 ... P40055 40399280
    976197 9g33:UG (3.05) BS02 rna N/A GO:0000447 ... P40055 40399280
    976198 9g33:UG (3.05) BS03 rna N/A GO:0000447 ... P40055 40399280
    976199 9g33:UJ (3.05) BS01 rna N/A GO:0000447 ... P42945 40399280
    976200 9g33:UK (3.05) BS01 rna N/A GO:0000447 ... P34247 40399280

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).