SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    978801 9gbv:A (2.32) BS01 dna N/A GO:0003677 ... P0AES4 N/A
    978802 9gbv:A (2.32) BS02 dna N/A GO:0003677 ... P0AES4 N/A
    978803 9gbv:B (2.32) BS01 dna N/A GO:0003677 ... P0AES6 N/A
    978804 9gbv:B (2.32) BS02 dna N/A GO:0003677 ... P0AES6 N/A
    978805 9gbv:C (2.32) BS01 dna N/A GO:0003677 ... P0AES4 N/A
    978806 9gbv:C (2.32) BS02 dna N/A GO:0003677 ... P0AES4 N/A
    978807 9gbv:D (2.32) BS01 dna N/A GO:0003677 ... P0AES6 N/A
    978808 9gbv:D (2.32) BS02 dna N/A GO:0003677 ... P0AES6 N/A
    978809 9gbw:B (3.5) BS01 rna N/A GO:0000388 ... Q9BV90 39809272
    978810 9gbw:C (3.5) BS01 rna N/A GO:0000388 ... Q16560 39809272
    978811 9gbw:C (3.5) BS02 rna N/A GO:0000388 ... Q16560 39809272
    978812 9gbw:D (3.5) BS01 rna N/A GO:0000388 ... Q8N8D1 39809272
    978813 9gbw:E (3.5) BS01 rna N/A GO:0000388 ... Q9UDW3 39809272
    978814 9gbw:E (3.5) BS02 rna N/A GO:0000388 ... Q9UDW3 39809272
    978815 9gbw:F (3.5) BS01 rna N/A GO:0000388 ... Q6IEG0 39809272
    978816 9gbw:F (3.5) BS02 rna N/A GO:0000388 ... Q6IEG0 39809272
    978817 9gbw:h (3.5) BS01 rna N/A GO:0000243 ... P62314 39809272
    978818 9gbw:i (3.5) BS01 rna N/A GO:0000244 ... P62316 39809272
    978819 9gbw:j (3.5) BS01 rna N/A GO:0000243 ... P62318 39809272
    978820 9gbw:k (3.5) BS01 rna N/A GO:0000244 ... P14678 39809272
    978821 9gbw:l (3.5) BS01 rna N/A GO:0000244 ... P62304 39809272
    978822 9gbw:m (3.5) BS01 rna N/A GO:0000244 ... P62306 39809272
    978823 9gbw:n (3.5) BS01 rna N/A GO:0000244 ... P62308 39809272
    978824 9gbz:B (3.4) BS01 rna N/A GO:0000388 ... Q9BV90 39809272
    978825 9gbz:C (3.4) BS01 rna N/A GO:0000388 ... Q16560 39809272
    978826 9gbz:C (3.4) BS02 rna N/A GO:0000388 ... Q16560 39809272
    978827 9gc0:D (3.2) BS01 rna N/A GO:0000388 ... Q8N8D1 39809272
    978828 9gc0:F (3.2) BS01 rna N/A GO:0000388 ... Q6IEG0 39809272
    978829 9gc0:h (3.2) BS01 rna N/A GO:0000243 ... P62314 39809272
    978830 9gc0:i (3.2) BS01 rna N/A GO:0000244 ... P62316 39809272
    978831 9gc0:j (3.2) BS01 rna N/A GO:0000243 ... P62318 39809272
    978832 9gc0:k (3.2) BS01 rna N/A GO:0000244 ... P14678 39809272
    978833 9gc0:l (3.2) BS01 rna N/A GO:0000244 ... P62304 39809272
    978834 9gc0:m (3.2) BS01 rna N/A GO:0000244 ... P62306 39809272
    978835 9gc0:n (3.2) BS01 rna N/A GO:0000244 ... P62308 39809272
    978836 9gc1:AAA (1.987) BS01 A1IJO N/A GO:0002003 ... P23946 39541507
    978837 9gc1:AAA (1.987) BS02 ZN N/A GO:0002003 ... P23946 39541507
    978838 9gc1:AAA (1.987) BS03 ZN N/A GO:0002003 ... P23946 39541507
    978839 9gc2:1 (3.29) BS01 CHL N/A GO:0009765 ... Q01667 40955088
    978840 9gc2:1 (3.29) BS02 CLA N/A GO:0009765 ... Q01667 40955088
    978841 9gc2:1 (3.29) BS03 CLA N/A GO:0009765 ... Q01667 40955088
    978842 9gc2:1 (3.29) BS04 CLA N/A GO:0009765 ... Q01667 40955088
    978843 9gc2:1 (3.29) BS05 CLA N/A GO:0009765 ... Q01667 40955088
    978844 9gc2:1 (3.29) BS06 CHL N/A GO:0009765 ... Q01667 40955088
    978845 9gc2:1 (3.29) BS07 CLA N/A GO:0009765 ... Q01667 40955088
    978846 9gc2:1 (3.29) BS08 CLA N/A GO:0009765 ... Q01667 40955088
    978847 9gc2:1 (3.29) BS09 CLA N/A GO:0009765 ... Q01667 40955088
    978848 9gc2:1 (3.29) BS10 CLA N/A GO:0009765 ... Q01667 40955088
    978849 9gc2:1 (3.29) BS11 CLA N/A GO:0009765 ... Q01667 40955088
    978850 9gc2:1 (3.29) BS12 CLA N/A GO:0009765 ... Q01667 40955088
    978851 9gc2:1 (3.29) BS13 CLA N/A GO:0009765 ... Q01667 40955088
    978852 9gc2:1 (3.29) BS14 XAT N/A GO:0009765 ... Q01667 40955088
    978853 9gc2:1 (3.29) BS15 CLA N/A GO:0009765 ... Q01667 40955088
    978854 9gc2:2 (3.29) BS01 CHL N/A GO:0009765 ... Q9SYW8 40955088
    978855 9gc2:2 (3.29) BS02 CLA N/A GO:0009765 ... Q9SYW8 40955088
    978856 9gc2:2 (3.29) BS03 CLA N/A GO:0009765 ... Q9SYW8 40955088
    978857 9gc2:2 (3.29) BS04 CLA N/A GO:0009765 ... Q9SYW8 40955088
    978858 9gc2:2 (3.29) BS05 CHL N/A GO:0009765 ... Q9SYW8 40955088
    978859 9gc2:2 (3.29) BS06 CHL N/A GO:0009765 ... Q9SYW8 40955088
    978860 9gc2:2 (3.29) BS07 CHL N/A GO:0009765 ... Q9SYW8 40955088
    978861 9gc2:2 (3.29) BS08 CLA N/A GO:0009765 ... Q9SYW8 40955088
    978862 9gc2:2 (3.29) BS09 CLA N/A GO:0009765 ... Q9SYW8 40955088
    978863 9gc2:2 (3.29) BS10 CLA N/A GO:0009765 ... Q9SYW8 40955088
    978864 9gc2:2 (3.29) BS11 CLA N/A GO:0009765 ... Q9SYW8 40955088
    978865 9gc2:2 (3.29) BS12 CLA N/A GO:0009765 ... Q9SYW8 40955088
    978866 9gc2:2 (3.29) BS13 CHL N/A GO:0009765 ... Q9SYW8 40955088
    978867 9gc2:2 (3.29) BS14 XAT N/A GO:0009765 ... Q9SYW8 40955088
    978868 9gc2:2 (3.29) BS15 CLA N/A GO:0009765 ... Q9SYW8 40955088
    978869 9gc2:3 (3.29) BS01 CHL N/A GO:0009765 ... Q9SY97 40955088
    978870 9gc2:3 (3.29) BS02 CLA N/A GO:0009765 ... Q9SY97 40955088
    978871 9gc2:3 (3.29) BS03 CLA N/A GO:0009765 ... Q9SY97 40955088
    978872 9gc2:3 (3.29) BS04 CLA N/A GO:0009765 ... Q9SY97 40955088
    978873 9gc2:3 (3.29) BS05 CLA N/A GO:0009765 ... Q9SY97 40955088
    978874 9gc2:3 (3.29) BS06 CLA N/A GO:0009765 ... Q9SY97 40955088
    978875 9gc2:3 (3.29) BS07 CLA N/A GO:0009765 ... Q9SY97 40955088
    978876 9gc2:3 (3.29) BS08 CHL N/A GO:0009765 ... Q9SY97 40955088
    978877 9gc2:3 (3.29) BS09 CLA N/A GO:0009765 ... Q9SY97 40955088
    978878 9gc2:3 (3.29) BS10 CLA N/A GO:0009765 ... Q9SY97 40955088
    978879 9gc2:3 (3.29) BS11 CLA N/A GO:0009765 ... Q9SY97 40955088
    978880 9gc2:3 (3.29) BS12 CLA N/A GO:0009765 ... Q9SY97 40955088
    978881 9gc2:3 (3.29) BS13 CLA N/A GO:0009765 ... Q9SY97 40955088
    978882 9gc2:3 (3.29) BS14 CLA N/A GO:0009765 ... Q9SY97 40955088
    978883 9gc2:3 (3.29) BS15 CLA N/A GO:0009765 ... Q9SY97 40955088
    978884 9gc2:3 (3.29) BS16 XAT N/A GO:0009765 ... Q9SY97 40955088
    978885 9gc2:3 (3.29) BS17 CLA N/A GO:0009765 ... Q9SY97 40955088
    978886 9gc2:4 (3.29) BS01 CHL N/A GO:0009765 ... P27521 40955088
    978887 9gc2:4 (3.29) BS02 CLA N/A GO:0009765 ... P27521 40955088
    978888 9gc2:4 (3.29) BS03 CLA N/A GO:0009765 ... P27521 40955088
    978889 9gc2:4 (3.29) BS04 CLA N/A GO:0009765 ... P27521 40955088
    978890 9gc2:4 (3.29) BS05 CLA N/A GO:0009765 ... P27521 40955088
    978891 9gc2:4 (3.29) BS06 CHL N/A GO:0009765 ... P27521 40955088
    978892 9gc2:4 (3.29) BS07 CHL N/A GO:0009765 ... P27521 40955088
    978893 9gc2:4 (3.29) BS08 CHL N/A GO:0009765 ... P27521 40955088
    978894 9gc2:4 (3.29) BS09 CLA N/A GO:0009765 ... P27521 40955088
    978895 9gc2:4 (3.29) BS10 CLA N/A GO:0009765 ... P27521 40955088
    978896 9gc2:4 (3.29) BS11 CLA N/A GO:0009765 ... P27521 40955088
    978897 9gc2:4 (3.29) BS12 CLA N/A GO:0009765 ... P27521 40955088
    978898 9gc2:4 (3.29) BS13 CLA N/A GO:0009765 ... P27521 40955088
    978899 9gc2:4 (3.29) BS14 CLA N/A GO:0009765 ... P27521 40955088
    978900 9gc2:4 (3.29) BS15 CHL N/A GO:0009765 ... P27521 40955088
    978901 9gc2:4 (3.29) BS16 XAT N/A GO:0009765 ... P27521 40955088
    978902 9gc2:A (3.29) BS01 peptide N/A GO:0000287 ... A0A8F5S1X0 40955088
    978903 9gc2:A (3.29) BS02 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978904 9gc2:A (3.29) BS03 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978905 9gc2:A (3.29) BS04 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978906 9gc2:A (3.29) BS05 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978907 9gc2:A (3.29) BS06 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978908 9gc2:A (3.29) BS07 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978909 9gc2:A (3.29) BS08 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978910 9gc2:A (3.29) BS09 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978911 9gc2:A (3.29) BS10 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978912 9gc2:A (3.29) BS11 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978913 9gc2:A (3.29) BS12 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978914 9gc2:A (3.29) BS13 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978915 9gc2:A (3.29) BS14 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978916 9gc2:A (3.29) BS15 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978917 9gc2:A (3.29) BS16 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978918 9gc2:A (3.29) BS17 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978919 9gc2:A (3.29) BS18 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978920 9gc2:A (3.29) BS19 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978921 9gc2:A (3.29) BS20 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978922 9gc2:A (3.29) BS21 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978923 9gc2:A (3.29) BS22 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978924 9gc2:A (3.29) BS23 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978925 9gc2:A (3.29) BS24 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978926 9gc2:A (3.29) BS25 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978927 9gc2:A (3.29) BS26 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978928 9gc2:A (3.29) BS27 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978929 9gc2:A (3.29) BS28 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978930 9gc2:A (3.29) BS29 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978931 9gc2:A (3.29) BS30 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978932 9gc2:A (3.29) BS31 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978933 9gc2:A (3.29) BS32 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978934 9gc2:A (3.29) BS33 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978935 9gc2:A (3.29) BS34 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978936 9gc2:A (3.29) BS35 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978937 9gc2:A (3.29) BS36 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978938 9gc2:A (3.29) BS37 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978939 9gc2:A (3.29) BS38 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978940 9gc2:A (3.29) BS39 PQN N/A GO:0000287 ... A0A8F5S1X0 40955088
    978941 9gc2:A (3.29) BS40 SF4 N/A GO:0000287 ... A0A8F5S1X0 40955088
    978942 9gc2:A (3.29) BS41 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978943 9gc2:A (3.29) BS42 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978944 9gc2:A (3.29) BS43 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978945 9gc2:A (3.29) BS44 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978946 9gc2:A (3.29) BS45 CLA N/A GO:0000287 ... A0A8F5S1X0 40955088
    978947 9gc2:B (3.29) BS01 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978948 9gc2:B (3.29) BS02 SF4 N/A GO:0000287 ... A0A8F5P166 40955088
    978949 9gc2:B (3.29) BS03 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978950 9gc2:B (3.29) BS04 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978951 9gc2:B (3.29) BS05 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978952 9gc2:B (3.29) BS06 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978953 9gc2:B (3.29) BS07 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978954 9gc2:B (3.29) BS08 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978955 9gc2:B (3.29) BS09 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978956 9gc2:B (3.29) BS10 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978957 9gc2:B (3.29) BS11 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978958 9gc2:B (3.29) BS12 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978959 9gc2:B (3.29) BS13 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978960 9gc2:B (3.29) BS14 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978961 9gc2:B (3.29) BS15 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978962 9gc2:B (3.29) BS16 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978963 9gc2:B (3.29) BS17 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978964 9gc2:B (3.29) BS18 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978965 9gc2:B (3.29) BS19 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978966 9gc2:B (3.29) BS20 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978967 9gc2:B (3.29) BS21 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978968 9gc2:B (3.29) BS22 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978969 9gc2:B (3.29) BS23 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978970 9gc2:B (3.29) BS24 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978971 9gc2:B (3.29) BS25 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978972 9gc2:B (3.29) BS26 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978973 9gc2:B (3.29) BS27 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978974 9gc2:B (3.29) BS28 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978975 9gc2:B (3.29) BS29 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978976 9gc2:B (3.29) BS30 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978977 9gc2:B (3.29) BS31 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978978 9gc2:B (3.29) BS32 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978979 9gc2:B (3.29) BS33 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978980 9gc2:B (3.29) BS34 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978981 9gc2:B (3.29) BS35 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978982 9gc2:B (3.29) BS36 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978983 9gc2:B (3.29) BS37 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978984 9gc2:B (3.29) BS38 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978985 9gc2:B (3.29) BS39 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978986 9gc2:B (3.29) BS40 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978987 9gc2:B (3.29) BS41 PQN N/A GO:0000287 ... A0A8F5P166 40955088
    978988 9gc2:B (3.29) BS42 CLA N/A GO:0000287 ... A0A8F5P166 40955088
    978989 9gc2:C (3.29) BS01 SF4 N/A GO:0003729 ... P62090 40955088
    978990 9gc2:C (3.29) BS02 SF4 N/A GO:0003729 ... P62090 40955088
    978991 9gc2:F (3.29) BS01 CLA N/A GO:0009522 ... Q9SHE8 40955088
    978992 9gc2:F (3.29) BS02 CLA N/A GO:0009522 ... Q9SHE8 40955088
    978993 9gc2:F (3.29) BS03 CLA N/A GO:0009522 ... Q9SHE8 40955088
    978994 9gc2:F (3.29) BS04 CLA N/A GO:0009522 ... Q9SHE8 40955088
    978995 9gc2:F (3.29) BS05 CLA N/A GO:0009522 ... Q9SHE8 40955088
    978996 9gc2:G (3.29) BS01 CLA N/A GO:0009522 ... Q9S7N7 40955088
    978997 9gc2:G (3.29) BS02 CLA N/A GO:0009522 ... Q9S7N7 40955088
    978998 9gc2:G (3.29) BS03 CLA N/A GO:0009522 ... Q9S7N7 40955088
    978999 9gc2:G (3.29) BS04 CLA N/A GO:0009522 ... Q9S7N7 40955088
    979000 9gc2:H (3.29) BS01 CLA N/A GO:0009522 ... Q9SUI7 40955088

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).