SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    979201 9gd1:C (4.0) BS02 dna N/A GO:0000786 ... P06897 39270644
    979202 9gd1:D (4.0) BS01 dna N/A GO:0000786 ... P02281 39270644
    979203 9gd1:D (4.0) BS02 dna N/A GO:0000786 ... P02281 39270644
    979204 9gd1:E (4.0) BS01 dna N/A GO:0000786 ... P84233 39270644
    979205 9gd1:E (4.0) BS02 dna N/A GO:0000786 ... P84233 39270644
    979206 9gd1:F (4.0) BS01 dna N/A GO:0000786 ... P62799 39270644
    979207 9gd1:F (4.0) BS02 dna N/A GO:0000786 ... P62799 39270644
    979208 9gd1:G (4.0) BS01 dna N/A GO:0000786 ... P06897 39270644
    979209 9gd1:G (4.0) BS02 dna N/A GO:0000786 ... P06897 39270644
    979210 9gd1:H (4.0) BS01 dna N/A GO:0000786 ... P02281 39270644
    979211 9gd1:K (4.0) BS01 dna N/A GO:0000786 ... P84233 39270644
    979212 9gd1:K (4.0) BS02 dna N/A GO:0000786 ... P84233 39270644
    979213 9gd1:L (4.0) BS01 dna N/A GO:0000786 ... P62799 39270644
    979214 9gd1:L (4.0) BS02 dna N/A GO:0000786 ... P62799 39270644
    979215 9gd1:M (4.0) BS01 dna N/A GO:0000786 ... P06897 39270644
    979216 9gd1:M (4.0) BS02 dna N/A GO:0000786 ... P06897 39270644
    979217 9gd1:N (4.0) BS01 dna N/A GO:0000786 ... P02281 39270644
    979218 9gd1:O (4.0) BS01 dna N/A GO:0000786 ... P84233 39270644
    979219 9gd1:O (4.0) BS02 dna N/A GO:0000786 ... P84233 39270644
    979220 9gd1:P (4.0) BS01 dna N/A GO:0000786 ... P62799 39270644
    979221 9gd1:P (4.0) BS02 dna N/A GO:0000786 ... P62799 39270644
    979222 9gd1:W (4.0) BS01 dna N/A GO:0000124 ... P32657 39270644
    979223 9gd1:W (4.0) BS02 dna N/A GO:0000124 ... P32657 39270644
    979224 9gd1:W (4.0) BS03 ADP N/A GO:0000124 ... P32657 39270644
    979225 9gd1:W (4.0) BS04 BEF N/A GO:0000124 ... P32657 39270644
    979226 9gd1:W (4.0) BS05 MG N/A GO:0000124 ... P32657 39270644
    979227 9gd2:A (4.2) BS01 dna N/A GO:0000786 ... P84233 39270644
    979228 9gd2:A (4.2) BS02 dna N/A GO:0000786 ... P84233 39270644
    979229 9gd2:B (4.2) BS01 dna N/A GO:0000786 ... P62799 39270644
    979230 9gd2:B (4.2) BS02 dna N/A GO:0000786 ... P62799 39270644
    979231 9gd2:C (4.2) BS01 dna N/A GO:0000786 ... P06897 39270644
    979232 9gd2:C (4.2) BS02 dna N/A GO:0000786 ... P06897 39270644
    979233 9gd2:C (4.2) BS03 peptide N/A GO:0000786 ... P06897 39270644
    979234 9gd2:D (4.2) BS01 dna N/A GO:0000786 ... P02281 39270644
    979235 9gd2:D (4.2) BS02 peptide N/A GO:0000786 ... P02281 39270644
    979236 9gd2:E (4.2) BS01 dna N/A GO:0000786 ... P84233 39270644
    979237 9gd2:E (4.2) BS02 dna N/A GO:0000786 ... P84233 39270644
    979238 9gd2:E (4.2) BS03 peptide N/A GO:0000786 ... P84233 39270644
    979239 9gd2:F (4.2) BS01 dna N/A GO:0000786 ... P62799 39270644
    979240 9gd2:F (4.2) BS02 dna N/A GO:0000786 ... P62799 39270644
    979241 9gd2:G (4.2) BS01 dna N/A GO:0000786 ... P06897 39270644
    979242 9gd2:G (4.2) BS02 dna N/A GO:0000786 ... P06897 39270644
    979243 9gd2:H (4.2) BS01 dna N/A GO:0000786 ... P02281 39270644
    979244 9gd2:H (4.2) BS02 dna N/A GO:0000786 ... P02281 39270644
    979245 9gd2:K (4.2) BS01 dna N/A GO:0000786 ... P84233 39270644
    979246 9gd2:K (4.2) BS02 dna N/A GO:0000786 ... P84233 39270644
    979247 9gd2:L (4.2) BS01 dna N/A GO:0000786 ... P62799 39270644
    979248 9gd2:L (4.2) BS02 dna N/A GO:0000786 ... P62799 39270644
    979249 9gd2:M (4.2) BS01 dna N/A GO:0000786 ... P06897 39270644
    979250 9gd2:M (4.2) BS02 dna N/A GO:0000786 ... P06897 39270644
    979251 9gd2:N (4.2) BS01 dna N/A GO:0000786 ... P02281 39270644
    979252 9gd2:O (4.2) BS01 dna N/A GO:0000786 ... P84233 39270644
    979253 9gd2:O (4.2) BS02 dna N/A GO:0000786 ... P84233 39270644
    979254 9gd2:P (4.2) BS01 dna N/A GO:0000786 ... P62799 39270644
    979255 9gd2:P (4.2) BS02 dna N/A GO:0000786 ... P62799 39270644
    979256 9gd2:Q (4.2) BS01 peptide N/A GO:0000786 ... P02281 39270644
    979257 9gd2:R (4.2) BS01 peptide N/A GO:0000786 ... P06897 39270644
    979258 9gd2:W (4.2) BS01 dna N/A GO:0000124 ... P32657 39270644
    979259 9gd2:W (4.2) BS02 dna N/A GO:0000124 ... P32657 39270644
    979260 9gd2:W (4.2) BS03 peptide N/A GO:0000124 ... P32657 39270644
    979261 9gd2:W (4.2) BS04 ADP N/A GO:0000124 ... P32657 39270644
    979262 9gd2:W (4.2) BS05 BEF N/A GO:0000124 ... P32657 39270644
    979263 9gd3:A (3.0) BS01 dna N/A GO:0000786 ... P84233 39270644
    979264 9gd3:A (3.0) BS02 dna N/A GO:0000786 ... P84233 39270644
    979265 9gd3:B (3.0) BS01 dna N/A GO:0000786 ... P62799 39270644
    979266 9gd3:B (3.0) BS02 dna N/A GO:0000786 ... P62799 39270644
    979267 9gd3:C (3.0) BS01 dna N/A GO:0000786 ... P06897 39270644
    979268 9gd3:C (3.0) BS02 dna N/A GO:0000786 ... P06897 39270644
    979269 9gd3:C (3.0) BS03 peptide N/A GO:0000786 ... P06897 39270644
    979270 9gd3:D (3.0) BS01 dna N/A GO:0000786 ... P02281 39270644
    979271 9gd3:D (3.0) BS02 peptide N/A GO:0000786 ... P02281 39270644
    979272 9gd3:E (3.0) BS01 dna N/A GO:0000786 ... P84233 39270644
    979273 9gd3:E (3.0) BS02 dna N/A GO:0000786 ... P84233 39270644
    979274 9gd3:E (3.0) BS03 peptide N/A GO:0000786 ... P84233 39270644
    979275 9gd3:F (3.0) BS01 dna N/A GO:0000786 ... P62799 39270644
    979276 9gd3:F (3.0) BS02 dna N/A GO:0000786 ... P62799 39270644
    979277 9gd3:G (3.0) BS01 dna N/A GO:0000786 ... P06897 39270644
    979278 9gd3:G (3.0) BS02 dna N/A GO:0000786 ... P06897 39270644
    979279 9gd3:H (3.0) BS01 dna N/A GO:0000786 ... P02281 39270644
    979280 9gd3:W (3.0) BS01 dna N/A GO:0000124 ... P32657 39270644
    979281 9gd3:W (3.0) BS02 dna N/A GO:0000124 ... P32657 39270644
    979282 9gd3:W (3.0) BS03 ADP N/A GO:0000124 ... P32657 39270644
    979283 9gd3:W (3.0) BS04 BEF N/A GO:0000124 ... P32657 39270644
    979284 9gd3:W (3.0) BS05 MG N/A GO:0000124 ... P32657 39270644
    979285 9gd4:A (2.039) BS01 GDP N/A GO:0000144 ... P25342 40137961
    979286 9gd4:A (2.039) BS02 GDP N/A GO:0000144 ... P25342 40137961
    979287 9gd4:B (2.039) BS01 GDP N/A GO:0005525 ... P32457 40137961
    979288 9gd4:B (2.039) BS02 GDP N/A GO:0005525 ... P32457 40137961
    979289 9gd4:C (2.039) BS01 GDP N/A GO:0005525 ... P32468 40137961
    979290 9gd4:C (2.039) BS02 GDP N/A GO:0005525 ... P32468 40137961
    979291 9gd4:D (2.039) BS01 GDP N/A GO:0005525 ... Q07657 40137961
    979292 9gd4:D (2.039) BS02 GDP N/A GO:0005525 ... Q07657 40137961
    979293 9gd5:A (1.681) BS01 ZN N/A N/A O15164 N/A
    979294 9gd5:A (1.681) BS02 ZN N/A N/A O15164 N/A
    979295 9gd5:B (1.681) BS01 ZN N/A N/A O15164 N/A
    979296 9gd5:B (1.681) BS02 ZN N/A N/A O15164 N/A
    979297 9gd7:L (4.25) BS01 peptide N/A GO:0000723 ... P13010 40328761
    979298 9gd7:L (4.25) BS02 dna N/A GO:0000723 ... P13010 40328761
    979299 9gd7:L (4.25) BS03 dna N/A GO:0000723 ... P13010 40328761
    979300 9gd7:S (4.25) BS01 dna N/A GO:0000460 ... P78527 40328761
    979301 9gd7:S (4.25) BS02 dna N/A GO:0000460 ... P78527 40328761
    979302 9gd7:T (4.25) BS01 peptide N/A GO:0000723 ... P12956 40328761
    979303 9gd7:T (4.25) BS02 dna N/A GO:0000723 ... P12956 40328761
    979304 9gd7:T (4.25) BS03 dna N/A GO:0000723 ... P12956 40328761
    979305 9gda:C (2.7) BS01 dna N/A GO:0000345 ... P0A8V2 41326756
    979306 9gda:C (2.7) BS02 rna N/A GO:0000345 ... P0A8V2 41326756
    979307 9gda:C (2.7) BS03 dna N/A GO:0000345 ... P0A8V2 41326756
    979308 9gda:D (2.7) BS01 dna N/A GO:0000287 ... P0A8T7 41326756
    979309 9gda:D (2.7) BS02 rna N/A GO:0000287 ... P0A8T7 41326756
    979310 9gda:D (2.7) BS03 dna N/A GO:0000287 ... P0A8T7 41326756
    979311 9gda:D (2.7) BS04 MG N/A GO:0000287 ... P0A8T7 41326756
    979312 9gda:D (2.7) BS05 ZN N/A GO:0000287 ... P0A8T7 41326756
    979313 9gda:D (2.7) BS06 ZN N/A GO:0000287 ... P0A8T7 41326756
    979314 9gda:F (2.7) BS01 dna N/A GO:0003677 ... P06612 41326756
    979315 9gda:F (2.7) BS02 dna N/A GO:0003677 ... P06612 41326756
    979316 9gda:F (2.7) BS03 ZN N/A GO:0003677 ... P06612 41326756
    979317 9gda:F (2.7) BS04 ZN N/A GO:0003677 ... P06612 41326756
    979318 9gda:F (2.7) BS05 ZN N/A GO:0003677 ... P06612 41326756
    979319 9gdb:C (3.8) BS01 rna N/A GO:0000345 ... P0A8V2 41326756
    979320 9gdb:C (3.8) BS02 dna N/A GO:0000345 ... P0A8V2 41326756
    979321 9gdb:D (3.8) BS01 dna N/A GO:0000287 ... P0A8T7 41326756
    979322 9gdb:D (3.8) BS02 rna N/A GO:0000287 ... P0A8T7 41326756
    979323 9gdb:D (3.8) BS03 dna N/A GO:0000287 ... P0A8T7 41326756
    979324 9gdb:D (3.8) BS04 MG N/A GO:0000287 ... P0A8T7 41326756
    979325 9gdb:D (3.8) BS05 ZN N/A GO:0000287 ... P0A8T7 41326756
    979326 9gdb:D (3.8) BS06 ZN N/A GO:0000287 ... P0A8T7 41326756
    979327 9gdb:F (3.8) BS01 ZN N/A GO:0003677 ... P06612 41326756
    979328 9gdb:F (3.8) BS02 ZN N/A GO:0003677 ... P06612 41326756
    979329 9gdb:F (3.8) BS03 ZN N/A GO:0003677 ... P06612 41326756
    979330 9gdc:C (4.3) BS01 rna N/A GO:0000345 ... P0A8V2 41326756
    979331 9gdc:C (4.3) BS02 dna N/A GO:0000345 ... P0A8V2 41326756
    979332 9gdc:D (4.3) BS01 dna N/A GO:0000287 ... P0A8T7 41326756
    979333 9gdc:D (4.3) BS02 rna N/A GO:0000287 ... P0A8T7 41326756
    979334 9gdc:D (4.3) BS03 dna N/A GO:0000287 ... P0A8T7 41326756
    979335 9gdc:D (4.3) BS04 MG N/A GO:0000287 ... P0A8T7 41326756
    979336 9gdc:D (4.3) BS05 ZN N/A GO:0000287 ... P0A8T7 41326756
    979337 9gdc:D (4.3) BS06 ZN N/A GO:0000287 ... P0A8T7 41326756
    979338 9gdc:F (4.3) BS01 ZN N/A GO:0003677 ... P06612 41326756
    979339 9gdc:F (4.3) BS02 ZN N/A GO:0003677 ... P06612 41326756
    979340 9gdc:F (4.3) BS03 ZN N/A GO:0003677 ... P06612 41326756
    979341 9gdd:C (4.3) BS01 dna N/A GO:0000345 ... P0A8V2 41326756
    979342 9gdd:C (4.3) BS02 rna N/A GO:0000345 ... P0A8V2 41326756
    979343 9gdd:C (4.3) BS03 dna N/A GO:0000345 ... P0A8V2 41326756
    979344 9gdd:D (4.3) BS01 dna N/A GO:0000287 ... P0A8T7 41326756
    979345 9gdd:D (4.3) BS02 rna N/A GO:0000287 ... P0A8T7 41326756
    979346 9gdd:D (4.3) BS03 dna N/A GO:0000287 ... P0A8T7 41326756
    979347 9gdd:D (4.3) BS04 MG N/A GO:0000287 ... P0A8T7 41326756
    979348 9gdd:D (4.3) BS05 ZN N/A GO:0000287 ... P0A8T7 41326756
    979349 9gdd:D (4.3) BS06 ZN N/A GO:0000287 ... P0A8T7 41326756
    979350 9gdd:F (4.3) BS01 ZN N/A GO:0003677 ... P06612 41326756
    979351 9gdd:F (4.3) BS02 ZN N/A GO:0003677 ... P06612 41326756
    979352 9gdd:F (4.3) BS03 ZN N/A GO:0003677 ... P06612 41326756
    979353 9gde:C (4.0) BS01 dna N/A GO:0000345 ... P0A8V2 41326756
    979354 9gde:C (4.0) BS02 rna N/A GO:0000345 ... P0A8V2 41326756
    979355 9gde:C (4.0) BS03 dna N/A GO:0000345 ... P0A8V2 41326756
    979356 9gde:D (4.0) BS01 dna N/A GO:0000287 ... P0A8T7 41326756
    979357 9gde:D (4.0) BS02 rna N/A GO:0000287 ... P0A8T7 41326756
    979358 9gde:D (4.0) BS03 dna N/A GO:0000287 ... P0A8T7 41326756
    979359 9gde:D (4.0) BS04 MG N/A GO:0000287 ... P0A8T7 41326756
    979360 9gde:D (4.0) BS05 ZN N/A GO:0000287 ... P0A8T7 41326756
    979361 9gde:D (4.0) BS06 ZN N/A GO:0000287 ... P0A8T7 41326756
    979362 9gde:F (4.0) BS01 dna N/A GO:0003677 ... P06612 41326756
    979363 9gde:F (4.0) BS02 ZN N/A GO:0003677 ... P06612 41326756
    979364 9gde:F (4.0) BS03 ZN N/A GO:0003677 ... P06612 41326756
    979365 9gde:F (4.0) BS04 ZN N/A GO:0003677 ... P06612 41326756
    979366 9gdf:A (2.28) BS01 CU N/A GO:0004129 ... Q5SJ79 N/A
    979367 9gdf:A (2.28) BS02 HEM N/A GO:0004129 ... Q5SJ79 N/A
    979368 9gdf:A (2.28) BS03 HAS N/A GO:0004129 ... Q5SJ79 N/A
    979369 9gdf:B (2.28) BS01 CUA N/A GO:0004129 ... Q5SJ80 N/A
    979370 9gdg:B (1.462) BS01 A1IKF N/A N/A O15164 N/A
    979371 9gdg:B (1.462) BS02 ZN N/A N/A O15164 N/A
    979372 9gdg:B (1.462) BS03 ZN N/A N/A O15164 N/A
    979373 9gdh:C (3.9) BS01 rna N/A GO:0000345 ... P0A8V2 41326756
    979374 9gdh:C (3.9) BS02 dna N/A GO:0000345 ... P0A8V2 41326756
    979375 9gdh:D (3.9) BS01 dna N/A GO:0000287 ... P0A8T7 41326756
    979376 9gdh:D (3.9) BS02 rna N/A GO:0000287 ... P0A8T7 41326756
    979377 9gdh:D (3.9) BS03 dna N/A GO:0000287 ... P0A8T7 41326756
    979378 9gdh:D (3.9) BS04 MG N/A GO:0000287 ... P0A8T7 41326756
    979379 9gdh:D (3.9) BS05 ZN N/A GO:0000287 ... P0A8T7 41326756
    979380 9gdh:D (3.9) BS06 ZN N/A GO:0000287 ... P0A8T7 41326756
    979381 9gdh:F (3.9) BS01 dna N/A GO:0003677 ... P06612 41326756
    979382 9gdh:F (3.9) BS02 ZN N/A GO:0003677 ... P06612 41326756
    979383 9gdh:F (3.9) BS03 ZN N/A GO:0003677 ... P06612 41326756
    979384 9gdh:F (3.9) BS04 ZN N/A GO:0003677 ... P06612 41326756
    979385 9gdi:A (2.81) BS01 A1IJ1 N/A GO:0001779 ... O00329 39635891
    979386 9gdj:A (1.47) BS01 SAH N/A GO:0008168 ... A0A918GRY4 39926702
    979387 9gdj:B (1.47) BS01 SAH N/A GO:0008168 ... A0A918GRY4 39926702
    979388 9gdj:C (1.47) BS01 SAH N/A GO:0008168 ... A0A918GRY4 39926702
    979389 9gdo:C (3.0) BS01 dna N/A GO:0003677 ... A5F3P5 41533787
    979390 9gdo:C (3.0) BS02 dna N/A GO:0003677 ... A5F3P5 41533787
    979391 9gdo:D (3.0) BS01 dna N/A GO:0000287 ... A5F3P6 41533787
    979392 9gdo:D (3.0) BS02 dna N/A GO:0000287 ... A5F3P6 41533787
    979393 9gdo:D (3.0) BS03 MG N/A GO:0000287 ... A5F3P6 41533787
    979394 9gdo:D (3.0) BS04 ZN N/A GO:0000287 ... A5F3P6 41533787
    979395 9gdo:D (3.0) BS05 ZN N/A GO:0000287 ... A5F3P6 41533787
    979396 9gdo:F (3.0) BS01 dna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979397 9gdo:F (3.0) BS02 dna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979398 9gdo:G (3.0) BS01 dna N/A GO:0003677 ... A5F572 41533787
    979399 9gdp:C (2.6) BS01 rna N/A GO:0003677 ... A5F3P5 41533787
    979400 9gdp:C (2.6) BS02 dna N/A GO:0003677 ... A5F3P5 41533787

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).