SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    979401 9gdp:C (2.6) BS03 dna N/A GO:0003677 ... A5F3P5 41533787
    979402 9gdp:D (2.6) BS01 rna N/A GO:0000287 ... A5F3P6 41533787
    979403 9gdp:D (2.6) BS02 dna N/A GO:0000287 ... A5F3P6 41533787
    979404 9gdp:D (2.6) BS03 dna N/A GO:0000287 ... A5F3P6 41533787
    979405 9gdp:D (2.6) BS04 ZN N/A GO:0000287 ... A5F3P6 41533787
    979406 9gdp:D (2.6) BS05 ZN N/A GO:0000287 ... A5F3P6 41533787
    979407 9gdp:D (2.6) BS06 MG N/A GO:0000287 ... A5F3P6 41533787
    979408 9gdp:F (2.6) BS01 rna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979409 9gdp:F (2.6) BS02 dna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979410 9gdp:F (2.6) BS03 dna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979411 9gdp:G (2.6) BS01 dna N/A GO:0003677 ... A5F572 41533787
    979412 9gdq:C (3.1) BS01 dna N/A GO:0003677 ... A5F3P5 41533787
    979413 9gdq:C (3.1) BS02 dna N/A GO:0003677 ... A5F3P5 41533787
    979414 9gdq:D (3.1) BS01 dna N/A GO:0000287 ... A5F3P6 41533787
    979415 9gdq:D (3.1) BS02 dna N/A GO:0000287 ... A5F3P6 41533787
    979416 9gdq:D (3.1) BS03 ZN N/A GO:0000287 ... A5F3P6 41533787
    979417 9gdq:D (3.1) BS04 ZN N/A GO:0000287 ... A5F3P6 41533787
    979418 9gdq:D (3.1) BS05 MG N/A GO:0000287 ... A5F3P6 41533787
    979419 9gdq:F (3.1) BS01 dna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979420 9gdq:F (3.1) BS02 dna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979421 9gdq:G (3.1) BS01 dna N/A GO:0003677 ... A5F572 41533787
    979422 9gdq:G (3.1) BS02 dna N/A GO:0003677 ... A5F572 41533787
    979423 9gdq:H (3.1) BS01 dna N/A N/A P15795 41533787
    979424 9gdq:H (3.1) BS02 dna N/A N/A P15795 41533787
    979425 9gdq:K (3.1) BS01 dna N/A N/A P15795 41533787
    979426 9gdq:K (3.1) BS02 dna N/A N/A P15795 41533787
    979427 9gdr:C (2.7) BS01 dna N/A GO:0003677 ... A5F3P5 41533787
    979428 9gdr:C (2.7) BS02 dna N/A GO:0003677 ... A5F3P5 41533787
    979429 9gdr:D (2.7) BS01 dna N/A GO:0000287 ... A5F3P6 41533787
    979430 9gdr:D (2.7) BS02 dna N/A GO:0000287 ... A5F3P6 41533787
    979431 9gdr:D (2.7) BS03 ZN N/A GO:0000287 ... A5F3P6 41533787
    979432 9gdr:D (2.7) BS04 ZN N/A GO:0000287 ... A5F3P6 41533787
    979433 9gdr:D (2.7) BS05 MG N/A GO:0000287 ... A5F3P6 41533787
    979434 9gdr:F (2.7) BS01 dna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979435 9gdr:F (2.7) BS02 dna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979436 9gdr:G (2.7) BS01 dna N/A GO:0003677 ... A5F572 41533787
    979437 9gdr:G (2.7) BS02 dna N/A GO:0003677 ... A5F572 41533787
    979438 9gdr:H (2.7) BS01 dna N/A N/A A0A0H3AHV1 41533787
    979439 9gdr:H (2.7) BS02 dna N/A N/A A0A0H3AHV1 41533787
    979440 9gdr:K (2.7) BS01 dna N/A N/A A0A0H3AHV1 41533787
    979441 9gdr:K (2.7) BS02 dna N/A N/A A0A0H3AHV1 41533787
    979442 9gds:C (2.9) BS01 dna N/A GO:0003677 ... A5F3P5 41533787
    979443 9gds:C (2.9) BS02 dna N/A GO:0003677 ... A5F3P5 41533787
    979444 9gds:D (2.9) BS01 dna N/A GO:0000287 ... A5F3P6 41533787
    979445 9gds:D (2.9) BS02 dna N/A GO:0000287 ... A5F3P6 41533787
    979446 9gds:D (2.9) BS03 MG N/A GO:0000287 ... A5F3P6 41533787
    979447 9gds:D (2.9) BS04 ZN N/A GO:0000287 ... A5F3P6 41533787
    979448 9gds:D (2.9) BS05 ZN N/A GO:0000287 ... A5F3P6 41533787
    979449 9gds:F (2.9) BS01 dna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979450 9gds:F (2.9) BS02 dna N/A GO:0003677 ... A0A0H3AJ64 41533787
    979451 9gds:G (2.9) BS01 dna N/A GO:0003677 ... A5F572 41533787
    979452 9gds:G (2.9) BS02 dna N/A GO:0003677 ... A5F572 41533787
    979453 9gds:H (2.9) BS01 dna N/A N/A A0A0H3AHV1 41533787
    979454 9gds:H (2.9) BS02 dna N/A N/A A0A0H3AHV1 41533787
    979455 9gds:I (2.9) BS01 dna N/A N/A P15795 41533787
    979456 9gds:K (2.9) BS01 dna N/A N/A A0A0H3AHV1 41533787
    979457 9gds:K (2.9) BS02 dna N/A N/A A0A0H3AHV1 41533787
    979458 9gdv:A (2.218) BS01 Q6K N/A GO:0004672 ... P00533 39869768
    979459 9gdv:B (2.218) BS01 Q6K N/A GO:0004672 ... P00533 39869768
    979460 9ge2:R (2.51) BS01 A1IKH N/A GO:0004930 ... Q9Y2T6 40000629
    979461 9ge2:R (2.51) BS02 CLR N/A GO:0004930 ... Q9Y2T6 40000629
    979462 9ge3:R (2.87) BS01 A1IKT N/A GO:0004930 ... Q9Y2T6 40000629
    979463 9ge4:M (3.52) BS01 dna N/A GO:0000786 ... P68431 41775336
    979464 9ge4:M (3.52) BS02 dna N/A GO:0000786 ... P68431 41775336
    979465 9ge4:N (3.52) BS01 dna N/A GO:0000781 ... P62805 41775336
    979466 9ge4:N (3.52) BS02 dna N/A GO:0000781 ... P62805 41775336
    979467 9ge4:O (3.52) BS01 dna N/A GO:0000786 ... P0C0S5 41775336
    979468 9ge4:O (3.52) BS02 dna N/A GO:0000786 ... P0C0S5 41775336
    979469 9ge4:P (3.52) BS01 dna N/A GO:0000786 ... Q16778 41775336
    979470 9ge4:P (3.52) BS02 dna N/A GO:0000786 ... Q16778 41775336
    979471 9ge4:Q (3.52) BS01 dna N/A GO:0000786 ... P68431 41775336
    979472 9ge4:Q (3.52) BS02 dna N/A GO:0000786 ... P68431 41775336
    979473 9ge4:R (3.52) BS01 dna N/A GO:0000781 ... P62805 41775336
    979474 9ge4:R (3.52) BS02 dna N/A GO:0000781 ... P62805 41775336
    979475 9ge4:S (3.52) BS01 dna N/A GO:0000786 ... P0C0S5 41775336
    979476 9ge4:S (3.52) BS02 dna N/A GO:0000786 ... P0C0S5 41775336
    979477 9ge4:T (3.52) BS01 dna N/A GO:0000786 ... Q16778 41775336
    979478 9ge4:T (3.52) BS02 dna N/A GO:0000786 ... Q16778 41775336
    979479 9ge5:A (3.35) BS01 ATP N/A GO:0000492 ... Q9Y265 N/A
    979480 9ge5:B (3.35) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    979481 9ge5:C (3.35) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    979482 9ge5:D (3.35) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    979483 9ge5:E (3.35) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    979484 9ge5:F (3.35) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    979485 9ge5:G (3.35) BS01 dna N/A GO:0005524 ... Q9ULG1 N/A
    979486 9ge5:G (3.35) BS02 dna N/A GO:0005524 ... Q9ULG1 N/A
    979487 9ge5:G (3.35) BS03 ADP N/A GO:0005524 ... Q9ULG1 N/A
    979488 9ge5:H (3.35) BS01 dna N/A GO:0006338 ... Q9C086 N/A
    979489 9ge5:I (3.35) BS01 dna N/A GO:0006338 ... Q6PI98 N/A
    979490 9ge5:J (3.35) BS01 ADP N/A GO:0005515 ... Q9H9F9 N/A
    979491 9ge5:M (3.35) BS01 dna N/A GO:0000786 ... P68431 N/A
    979492 9ge5:M (3.35) BS02 dna N/A GO:0000786 ... P68431 N/A
    979493 9ge5:N (3.35) BS01 dna N/A GO:0003677 ... P62805 N/A
    979494 9ge5:N (3.35) BS02 dna N/A GO:0003677 ... P62805 N/A
    979495 9ge5:Q (3.35) BS01 dna N/A GO:0000786 ... P68431 N/A
    979496 9ge5:Q (3.35) BS02 dna N/A GO:0000786 ... P68431 N/A
    979497 9ge5:R (3.35) BS01 dna N/A GO:0003677 ... P62805 N/A
    979498 9ge5:R (3.35) BS02 dna N/A GO:0003677 ... P62805 N/A
    979499 9ge5:S (3.35) BS01 dna N/A GO:0000786 ... P04908 N/A
    979500 9ge5:S (3.35) BS02 dna N/A GO:0000786 ... P04908 N/A
    979501 9ge5:T (3.35) BS01 dna N/A GO:0000786 ... P33778 N/A
    979502 9ge5:T (3.35) BS02 dna N/A GO:0000786 ... P33778 N/A
    979503 9ge7:B (3.66) BS01 ANP N/A GO:0005524 ... P0A9T8 N/A
    979504 9ge7:B (3.66) BS02 MG N/A GO:0005524 ... P0A9T8 N/A
    979505 9ge7:B (3.66) BS03 ANP N/A GO:0005524 ... P0A9T8 N/A
    979506 9ge7:C (3.66) BS01 ANP N/A GO:0005524 ... P0A9T8 N/A
    979507 9ge7:C (3.66) BS02 ANP N/A GO:0005524 ... P0A9T8 N/A
    979508 9ge7:C (3.66) BS03 MG N/A GO:0005524 ... P0A9T8 N/A
    979509 9ge8:B (4.55) BS01 ANP N/A GO:0005524 ... P0A9T8 N/A
    979510 9ge8:B (4.55) BS02 ANP N/A GO:0005524 ... P0A9T8 N/A
    979511 9ge8:C (4.55) BS01 ANP N/A GO:0005524 ... P0A9T8 N/A
    979512 9ge8:C (4.55) BS02 ANP N/A GO:0005524 ... P0A9T8 N/A
    979513 9ge8:C (4.55) BS03 MG N/A GO:0005524 ... P0A9T8 N/A
    979514 9gef:A (2.62) BS01 dna N/A GO:0003677 ... P72525 39361644
    979515 9gef:A (2.62) BS02 dna N/A GO:0003677 ... P72525 39361644
    979516 9gef:A (2.62) BS03 dna N/A GO:0003677 ... P72525 39361644
    979517 9gef:A (2.62) BS04 MG N/A GO:0003677 ... P72525 39361644
    979518 9gef:A (2.62) BS05 TE9 N/A GO:0003677 ... P72525 39361644
    979519 9gef:B (2.62) BS01 dna N/A GO:0003677 ... P72525 39361644
    979520 9gef:B (2.62) BS02 dna N/A GO:0003677 ... P72525 39361644
    979521 9gef:B (2.62) BS03 dna N/A GO:0003677 ... P72525 39361644
    979522 9gef:B (2.62) BS04 MG N/A GO:0003677 ... P72525 39361644
    979523 9gef:B (2.62) BS05 TE9 N/A GO:0003677 ... P72525 39361644
    979524 9gej:A (1.84) BS01 A1IKJ N/A N/A Q92793 N/A
    979525 9gej:A (1.84) BS02 A1IKJ N/A N/A Q92793 N/A
    979526 9gej:B (1.84) BS01 A1IKJ N/A N/A Q92793 N/A
    979527 9gej:B (1.84) BS02 A1IKJ N/A N/A Q92793 N/A
    979528 9gej:C (1.84) BS01 A1IKJ N/A N/A Q92793 N/A
    979529 9gej:C (1.84) BS02 A1IKJ N/A N/A Q92793 N/A
    979530 9gej:D (1.84) BS01 A1IKJ N/A N/A Q92793 N/A
    979531 9gej:D (1.84) BS02 A1IKJ N/A N/A Q92793 N/A
    979532 9gej:E (1.84) BS01 A1IKJ N/A N/A Q92793 N/A
    979533 9gej:F (1.84) BS01 A1IKJ N/A N/A Q92793 N/A
    979534 9gej:F (1.84) BS02 A1IKJ N/A N/A Q92793 N/A
    979535 9gej:G (1.84) BS01 A1IKJ N/A N/A Q92793 N/A
    979536 9gej:G (1.84) BS02 A1IKJ N/A N/A Q92793 N/A
    979537 9gek:A (2.15) BS01 FRU N/A GO:0008643 ... Q969Z0 39727163
    979538 9gek:A (2.15) BS02 GLC N/A GO:0008643 ... Q969Z0 39727163
    979539 9gek:A (2.15) BS03 FRU N/A GO:0008643 ... Q969Z0 39727163
    979540 9gel:M (4.86) BS01 dna N/A GO:0000786 ... P68431 41775336
    979541 9gel:M (4.86) BS02 dna N/A GO:0000786 ... P68431 41775336
    979542 9gel:N (4.86) BS01 dna N/A GO:0000781 ... P62805 41775336
    979543 9gel:N (4.86) BS02 dna N/A GO:0000781 ... P62805 41775336
    979544 9gel:Q (4.86) BS01 dna N/A GO:0000786 ... P68431 41775336
    979545 9gel:Q (4.86) BS02 dna N/A GO:0000786 ... P68431 41775336
    979546 9gel:R (4.86) BS01 dna N/A GO:0000781 ... P62805 41775336
    979547 9gel:R (4.86) BS02 dna N/A GO:0000781 ... P62805 41775336
    979548 9gel:S (4.86) BS01 dna N/A GO:0000786 ... P04908 41775336
    979549 9gel:S (4.86) BS02 dna N/A GO:0000786 ... P04908 41775336
    979550 9gel:T (4.86) BS01 dna N/A GO:0000786 ... Q16778 41775336
    979551 9gem:A (2.015) BS01 A1IJI N/A GO:0005515 ... O95848 N/A
    979552 9gem:A (2.015) BS02 A1IJI N/A GO:0005515 ... O95848 N/A
    979553 9gem:B (2.015) BS01 A1IJI N/A GO:0005515 ... O95848 N/A
    979554 9gem:B (2.015) BS02 A1IJI N/A GO:0005515 ... O95848 N/A
    979555 9gem:D (2.015) BS01 A1IJI N/A GO:0005515 ... O95848 N/A
    979556 9gen:A (3.76) BS01 dna N/A GO:0000786 ... P84233 40963017
    979557 9gen:A (3.76) BS02 dna N/A GO:0000786 ... P84233 40963017
    979558 9gen:B (3.76) BS01 dna N/A GO:0003677 ... P62799 40963017
    979559 9gen:B (3.76) BS02 dna N/A GO:0003677 ... P62799 40963017
    979560 9gen:C (3.76) BS01 dna N/A GO:0000786 ... P06897 40963017
    979561 9gen:C (3.76) BS02 dna N/A GO:0000786 ... P06897 40963017
    979562 9gen:D (3.76) BS01 dna N/A GO:0000786 ... P02281 40963017
    979563 9gen:D (3.76) BS02 dna N/A GO:0000786 ... P02281 40963017
    979564 9gen:E (3.76) BS01 dna N/A GO:0000786 ... P84233 40963017
    979565 9gen:E (3.76) BS02 dna N/A GO:0000786 ... P84233 40963017
    979566 9gen:F (3.76) BS01 dna N/A GO:0003677 ... P62799 40963017
    979567 9gen:F (3.76) BS02 dna N/A GO:0003677 ... P62799 40963017
    979568 9gen:G (3.76) BS01 dna N/A GO:0000786 ... P06897 40963017
    979569 9gen:G (3.76) BS02 dna N/A GO:0000786 ... P06897 40963017
    979570 9gen:H (3.76) BS01 dna N/A GO:0000786 ... P02281 40963017
    979571 9gen:H (3.76) BS02 dna N/A GO:0000786 ... P02281 40963017
    979572 9geo:A (2.79) BS01 dna N/A GO:0000786 ... P84233 40963017
    979573 9geo:A (2.79) BS02 dna N/A GO:0000786 ... P84233 40963017
    979574 9geo:B (2.79) BS01 dna N/A GO:0003677 ... P62799 40963017
    979575 9geo:B (2.79) BS02 dna N/A GO:0003677 ... P62799 40963017
    979576 9geo:C (2.79) BS01 dna N/A GO:0000786 ... P06897 40963017
    979577 9geo:C (2.79) BS02 dna N/A GO:0000786 ... P06897 40963017
    979578 9geo:D (2.79) BS01 dna N/A GO:0000786 ... P02281 40963017
    979579 9geo:D (2.79) BS02 dna N/A GO:0000786 ... P02281 40963017
    979580 9geo:E (2.79) BS01 dna N/A GO:0000786 ... P84233 40963017
    979581 9geo:E (2.79) BS02 dna N/A GO:0000786 ... P84233 40963017
    979582 9geo:F (2.79) BS01 dna N/A GO:0003677 ... P62799 40963017
    979583 9geo:F (2.79) BS02 dna N/A GO:0003677 ... P62799 40963017
    979584 9geo:G (2.79) BS01 dna N/A GO:0000786 ... P06897 40963017
    979585 9geo:G (2.79) BS02 dna N/A GO:0000786 ... P06897 40963017
    979586 9geo:H (2.79) BS01 dna N/A GO:0000786 ... P02281 40963017
    979587 9geo:H (2.79) BS02 dna N/A GO:0000786 ... P02281 40963017
    979588 9gep:A (2.89) BS01 dna N/A GO:0000786 ... P84233 40963017
    979589 9gep:A (2.89) BS02 dna N/A GO:0000786 ... P84233 40963017
    979590 9gep:B (2.89) BS01 dna N/A GO:0003677 ... P62799 40963017
    979591 9gep:B (2.89) BS02 dna N/A GO:0003677 ... P62799 40963017
    979592 9gep:C (2.89) BS01 dna N/A GO:0000786 ... P06897 40963017
    979593 9gep:C (2.89) BS02 dna N/A GO:0000786 ... P06897 40963017
    979594 9gep:D (2.89) BS01 dna N/A GO:0000786 ... P02281 40963017
    979595 9gep:D (2.89) BS02 dna N/A GO:0000786 ... P02281 40963017
    979596 9gep:E (2.89) BS01 dna N/A GO:0000786 ... P84233 40963017
    979597 9gep:E (2.89) BS02 dna N/A GO:0000786 ... P84233 40963017
    979598 9gep:F (2.89) BS01 dna N/A GO:0003677 ... P62799 40963017
    979599 9gep:G (2.89) BS01 dna N/A GO:0000786 ... P06897 40963017
    979600 9gep:G (2.89) BS02 dna N/A GO:0000786 ... P06897 40963017

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).