SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    979601 9gep:H (2.89) BS01 dna N/A GO:0000786 ... P02281 40963017
    979602 9gep:H (2.89) BS02 dna N/A GO:0000786 ... P02281 40963017
    979603 9gep:M (2.89) BS01 HEM N/A GO:0004601 ... P05164 40963017
    979604 9gep:N (2.89) BS01 HEM N/A GO:0004601 ... P05164 40963017
    979605 9geq:A (3.12) BS01 dna N/A GO:0000786 ... P84233 40963017
    979606 9geq:A (3.12) BS02 dna N/A GO:0000786 ... P84233 40963017
    979607 9geq:B (3.12) BS01 dna N/A GO:0003677 ... P62799 40963017
    979608 9geq:B (3.12) BS02 dna N/A GO:0003677 ... P62799 40963017
    979609 9geq:C (3.12) BS01 dna N/A GO:0000786 ... P06897 40963017
    979610 9geq:C (3.12) BS02 dna N/A GO:0000786 ... P06897 40963017
    979611 9geq:D (3.12) BS01 dna N/A GO:0000786 ... P02281 40963017
    979612 9geq:D (3.12) BS02 dna N/A GO:0000786 ... P02281 40963017
    979613 9geq:E (3.12) BS01 dna N/A GO:0000786 ... P84233 40963017
    979614 9geq:E (3.12) BS02 dna N/A GO:0000786 ... P84233 40963017
    979615 9geq:F (3.12) BS01 dna N/A GO:0003677 ... P62799 40963017
    979616 9geq:F (3.12) BS02 dna N/A GO:0003677 ... P62799 40963017
    979617 9geq:G (3.12) BS01 dna N/A GO:0000786 ... P06897 40963017
    979618 9geq:G (3.12) BS02 dna N/A GO:0000786 ... P06897 40963017
    979619 9geq:H (3.12) BS01 dna N/A GO:0000786 ... P02281 40963017
    979620 9geq:H (3.12) BS02 dna N/A GO:0000786 ... P02281 40963017
    979621 9geq:K (3.12) BS01 HEM N/A GO:0004601 ... P05164 40963017
    979622 9geq:L (3.12) BS01 BMA N/A GO:0004601 ... P05164 40963017
    979623 9geq:L (3.12) BS02 HEM N/A GO:0004601 ... P05164 40963017
    979624 9geq:L (3.12) BS03 CA N/A GO:0004601 ... P05164 40963017
    979625 9geq:M (3.12) BS01 HEM N/A GO:0004601 ... P05164 40963017
    979626 9geq:N (3.12) BS01 BMA N/A GO:0004601 ... P05164 40963017
    979627 9geq:N (3.12) BS02 MAN N/A GO:0004601 ... P05164 40963017
    979628 9geq:N (3.12) BS03 HEM N/A GO:0004601 ... P05164 40963017
    979629 9geq:N (3.12) BS04 CA N/A GO:0004601 ... P05164 40963017
    979630 9ger:A (3.58) BS01 dna N/A GO:0000786 ... P84233 40963017
    979631 9ger:E (3.58) BS01 dna N/A GO:0000786 ... P84233 40963017
    979632 9ger:G (3.58) BS01 dna N/A GO:0000786 ... P06897 40963017
    979633 9ger:K (3.58) BS01 HEM N/A GO:0004601 ... P05164 40963017
    979634 9ger:L (3.58) BS01 HEM N/A GO:0004601 ... P05164 40963017
    979635 9ger:L (3.58) BS02 CA N/A GO:0004601 ... P05164 40963017
    979636 9ger:M (3.58) BS01 HEM N/A GO:0004601 ... P05164 40963017
    979637 9ger:N (3.58) BS01 BMA N/A GO:0004601 ... P05164 40963017
    979638 9ger:N (3.58) BS02 HEM N/A GO:0004601 ... P05164 40963017
    979639 9ges:A (2.43) BS01 ZN N/A GO:0000795 ... Q9NPC3 N/A
    979640 9ges:A (2.43) BS02 ZN N/A GO:0000795 ... Q9NPC3 N/A
    979641 9ges:B (2.43) BS01 ZN N/A GO:0000795 ... Q9NPC3 N/A
    979642 9ges:B (2.43) BS02 ZN N/A GO:0000795 ... Q9NPC3 N/A
    979643 9ges:C (2.43) BS01 ZN N/A GO:0000795 ... Q9NPC3 N/A
    979644 9ges:C (2.43) BS02 ZN N/A GO:0000795 ... Q9NPC3 N/A
    979645 9ges:D (2.43) BS01 ZN N/A GO:0000795 ... Q9NPC3 N/A
    979646 9ges:D (2.43) BS02 ZN N/A GO:0000795 ... Q9NPC3 N/A
    979647 9get:A (1.29) BS01 A1IKM N/A N/A Q92793 N/A
    979648 9geu:A (1.56) BS01 A1IKL N/A N/A Q92793 N/A
    979649 9geu:B (1.56) BS01 BU3 N/A N/A Q92793 N/A
    979650 9geu:B (1.56) BS02 A1IKL N/A N/A Q92793 N/A
    979651 9gev:A (3.47) BS01 ATP N/A GO:0000492 ... Q9Y265 N/A
    979652 9gev:B (3.47) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    979653 9gev:C (3.47) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    979654 9gev:D (3.47) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    979655 9gev:E (3.47) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    979656 9gev:F (3.47) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    979657 9gev:G (3.47) BS01 dna N/A GO:0000070 ... Q9ULG1 N/A
    979658 9gev:G (3.47) BS02 dna N/A GO:0000070 ... Q9ULG1 N/A
    979659 9gev:G (3.47) BS03 ADP N/A GO:0000070 ... Q9ULG1 N/A
    979660 9gev:H (3.47) BS01 dna N/A GO:0005515 ... Q9C086 N/A
    979661 9gev:I (3.47) BS01 dna N/A GO:0000723 ... Q6PI98 N/A
    979662 9gev:J (3.47) BS01 dna N/A GO:0005515 ... Q9H9F9 N/A
    979663 9gev:M (3.47) BS01 dna N/A GO:0000786 ... P68431 N/A
    979664 9gev:M (3.47) BS02 dna N/A GO:0000786 ... P68431 N/A
    979665 9gev:N (3.47) BS01 dna N/A GO:0000781 ... P62805 N/A
    979666 9gev:N (3.47) BS02 dna N/A GO:0000781 ... P62805 N/A
    979667 9gev:O (3.47) BS01 dna N/A GO:0000786 ... P04908 N/A
    979668 9gev:O (3.47) BS02 dna N/A GO:0000786 ... P04908 N/A
    979669 9gev:P (3.47) BS01 dna N/A GO:0000786 ... Q16778 N/A
    979670 9gev:P (3.47) BS02 dna N/A GO:0000786 ... Q16778 N/A
    979671 9gev:Q (3.47) BS01 dna N/A GO:0000786 ... P68431 N/A
    979672 9gev:Q (3.47) BS02 dna N/A GO:0000786 ... P68431 N/A
    979673 9gev:R (3.47) BS01 dna N/A GO:0000781 ... P62805 N/A
    979674 9gev:R (3.47) BS02 dna N/A GO:0000781 ... P62805 N/A
    979675 9gev:S (3.47) BS01 dna N/A GO:0000786 ... P04908 N/A
    979676 9gev:S (3.47) BS02 dna N/A GO:0000786 ... P04908 N/A
    979677 9gev:T (3.47) BS01 dna N/A GO:0000786 ... Q16778 N/A
    979678 9gev:T (3.47) BS02 dna N/A GO:0000786 ... Q16778 N/A
    979679 9gew:A (1.47) BS01 A1IKI N/A N/A Q92793 N/A
    979680 9gew:A (1.47) BS02 BU3 N/A N/A Q92793 N/A
    979681 9gex:A (2.6) BS01 ZN N/A GO:0003690 ... P0A8D0 N/A
    979682 9gex:B (2.6) BS01 ZN N/A GO:0003690 ... P0A8D0 N/A
    979683 9gex:B (2.6) BS02 ATP N/A GO:0003690 ... P0A8D0 N/A
    979684 9gex:C (2.6) BS01 ZN N/A GO:0003690 ... P0A8D0 N/A
    979685 9gex:C (2.6) BS02 ADP N/A GO:0003690 ... P0A8D0 N/A
    979686 9gex:D (2.6) BS01 ZN N/A GO:0003690 ... P0A8D0 N/A
    979687 9gex:D (2.6) BS02 ATP N/A GO:0003690 ... P0A8D0 N/A
    979688 9gey:A (1.56) BS01 A1IKK N/A N/A Q92793 N/A
    979689 9gey:B (1.56) BS01 A1IKK N/A N/A Q92793 N/A
    979690 9gez:A (2.88) BS01 FAD N/A GO:0004791 ... C8CCG0 40304242
    979691 9gez:B (2.88) BS01 FAD N/A GO:0004791 ... C8CCG0 40304242
    979692 9gf1:A (1.5) BS01 BGC N/A GO:0030246 ... P17931 N/A
    979693 9gf1:A (1.5) BS02 GAL N/A GO:0030246 ... P17931 N/A
    979694 9gf5:H (1.57) BS01 A1IKQ N/A N/A N/A 41166443
    979695 9gf5:L (1.57) BS01 A1IKQ N/A N/A N/A 41166443
    979696 9gf6:M (3.8) BS01 dna N/A GO:0000786 ... P68431 41775336
    979697 9gf6:M (3.8) BS02 dna N/A GO:0000786 ... P68431 41775336
    979698 9gf6:N (3.8) BS01 dna N/A GO:0000781 ... P62805 41775336
    979699 9gf6:N (3.8) BS02 dna N/A GO:0000781 ... P62805 41775336
    979700 9gf6:O (3.8) BS01 dna N/A GO:0000786 ... P04908 41775336
    979701 9gf6:O (3.8) BS02 dna N/A GO:0000786 ... P04908 41775336
    979702 9gf6:P (3.8) BS01 dna N/A GO:0000786 ... Q16778 41775336
    979703 9gf6:P (3.8) BS02 dna N/A GO:0000786 ... Q16778 41775336
    979704 9gf6:Q (3.8) BS01 dna N/A GO:0000786 ... P68431 41775336
    979705 9gf6:Q (3.8) BS02 dna N/A GO:0000786 ... P68431 41775336
    979706 9gf6:R (3.8) BS01 dna N/A GO:0000781 ... P62805 41775336
    979707 9gf6:R (3.8) BS02 dna N/A GO:0000781 ... P62805 41775336
    979708 9gf6:S (3.8) BS01 dna N/A GO:0000786 ... P04908 41775336
    979709 9gf6:S (3.8) BS02 dna N/A GO:0000786 ... P04908 41775336
    979710 9gf6:T (3.8) BS01 dna N/A GO:0000786 ... Q16778 41775336
    979711 9gf6:T (3.8) BS02 dna N/A GO:0000786 ... Q16778 41775336
    979712 9gf7:A (1.9) BS01 A1IYL N/A GO:0008233 ... P0DTC1 39873316
    979713 9gf9:A (1.76) BS01 peptide N/A GO:0003676 ... P61823 39714600
    979714 9gf9:A (1.76) BS02 peptide N/A GO:0003676 ... P61823 39714600
    979715 9gf9:B (1.76) BS01 peptide N/A GO:0003676 ... P61823 39714600
    979716 9gf9:B (1.76) BS02 peptide N/A GO:0003676 ... P61823 39714600
    979717 9gf9:C (1.76) BS01 peptide N/A GO:0003676 ... P61823 39714600
    979718 9gf9:D (1.76) BS01 peptide N/A GO:0003676 ... P61823 39714600
    979719 9gf9:E (1.76) BS01 peptide N/A GO:0003676 ... P61823 39714600
    979720 9gf9:F (1.76) BS01 peptide N/A GO:0003676 ... P61823 39714600
    979721 9gfa:A (1.6) BS01 peptide N/A GO:0001836 ... P31947 N/A
    979722 9gfa:A (1.6) BS02 A1IKN N/A GO:0001836 ... P31947 N/A
    979723 9gfb:A (3.55) BS01 ATP N/A GO:0000492 ... Q9Y265 N/A
    979724 9gfb:B (3.55) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    979725 9gfb:C (3.55) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    979726 9gfb:D (3.55) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    979727 9gfb:E (3.55) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    979728 9gfb:F (3.55) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    979729 9gfb:G (3.55) BS01 dna N/A GO:0000070 ... Q9ULG1 N/A
    979730 9gfb:G (3.55) BS02 dna N/A GO:0000070 ... Q9ULG1 N/A
    979731 9gfb:G (3.55) BS03 ADP N/A GO:0000070 ... Q9ULG1 N/A
    979732 9gfb:H (3.55) BS01 dna N/A GO:0005515 ... Q9C086 N/A
    979733 9gfb:H (3.55) BS02 ZN N/A GO:0005515 ... Q9C086 N/A
    979734 9gfb:I (3.55) BS01 dna N/A GO:0000723 ... Q6PI98 N/A
    979735 9gfb:J (3.55) BS01 dna N/A GO:0005515 ... Q9H9F9 N/A
    979736 9gfb:J (3.55) BS02 dna N/A GO:0005515 ... Q9H9F9 N/A
    979737 9gfb:M (3.55) BS01 dna N/A GO:0000786 ... P68431 N/A
    979738 9gfb:M (3.55) BS02 dna N/A GO:0000786 ... P68431 N/A
    979739 9gfb:N (3.55) BS01 dna N/A GO:0000781 ... P62805 N/A
    979740 9gfb:N (3.55) BS02 dna N/A GO:0000781 ... P62805 N/A
    979741 9gfb:O (3.55) BS01 dna N/A GO:0000786 ... P04908 N/A
    979742 9gfb:O (3.55) BS02 dna N/A GO:0000786 ... P04908 N/A
    979743 9gfb:P (3.55) BS01 dna N/A GO:0000786 ... Q16778 N/A
    979744 9gfb:P (3.55) BS02 dna N/A GO:0000786 ... Q16778 N/A
    979745 9gfb:Q (3.55) BS01 dna N/A GO:0000786 ... P68431 N/A
    979746 9gfb:Q (3.55) BS02 dna N/A GO:0000786 ... P68431 N/A
    979747 9gfb:R (3.55) BS01 dna N/A GO:0000781 ... P62805 N/A
    979748 9gfb:R (3.55) BS02 dna N/A GO:0000781 ... P62805 N/A
    979749 9gfb:S (3.55) BS01 dna N/A GO:0000786 ... P04908 N/A
    979750 9gfb:S (3.55) BS02 dna N/A GO:0000786 ... P04908 N/A
    979751 9gfb:T (3.55) BS01 dna N/A GO:0000786 ... Q16778 N/A
    979752 9gfb:T (3.55) BS02 dna N/A GO:0000786 ... Q16778 N/A
    979753 9gfc:A (2.501) BS01 peptide N/A GO:0005634 ... Q00987 39714600
    979754 9gfc:B (2.501) BS01 peptide N/A GO:0005634 ... Q00987 39714600
    979755 9gfc:C (2.501) BS01 peptide N/A GO:0005634 ... Q00987 39714600
    979756 9gfd:H (1.43) BS01 A1IKZ N/A N/A N/A 41166443
    979757 9gfd:L (1.43) BS01 HIS N/A N/A N/A 41166443
    979758 9gfd:L (1.43) BS02 A1IKZ N/A N/A N/A 41166443
    979759 9gfe:A (1.583) BS01 peptide N/A GO:0003677 ... P10276 39714600
    979760 9gfe:A (1.583) BS02 EQN N/A GO:0003677 ... P10276 39714600
    979761 9gff:H (2.8) BS01 FUC N/A N/A N/A 41469389
    979762 9gfh:H (2.72) BS01 FUC N/A N/A N/A 41469389
    979763 9gfi:A (2.1) BS01 peptide N/A GO:0003677 ... P10276 39714600
    979764 9gfi:A (2.1) BS02 EQN N/A GO:0003677 ... P10276 39714600
    979765 9gfj:H (1.48) BS01 A1IKV N/A N/A N/A 41166443
    979766 9gfj:L (1.48) BS01 A1IKV N/A N/A N/A 41166443
    979767 9gfk:A (1.841) BS01 peptide N/A GO:0005634 ... Q00987 40014761
    979768 9gfk:A (1.841) BS02 peptide N/A GO:0005634 ... Q00987 40014761
    979769 9gfk:B (1.841) BS01 peptide N/A GO:0005634 ... Q00987 40014761
    979770 9gfk:B (1.841) BS02 peptide N/A GO:0005634 ... Q00987 40014761
    979771 9gfk:B (1.841) BS03 peptide N/A GO:0005634 ... Q00987 40014761
    979772 9gfk:C (1.841) BS01 peptide N/A GO:0005634 ... Q00987 40014761
    979773 9gfk:C (1.841) BS02 peptide N/A GO:0005634 ... Q00987 40014761
    979774 9gfk:C (1.841) BS03 peptide N/A GO:0005634 ... Q00987 40014761
    979775 9gfk:D (1.841) BS01 peptide N/A GO:0005634 ... Q00987 40014761
    979776 9gfk:D (1.841) BS02 peptide N/A GO:0005634 ... Q00987 40014761
    979777 9gfk:D (1.841) BS03 peptide N/A GO:0005634 ... Q00987 40014761
    979778 9gfm:M (3.8) BS01 dna N/A GO:0000786 ... P68431 41775336
    979779 9gfm:M (3.8) BS02 dna N/A GO:0000786 ... P68431 41775336
    979780 9gfm:N (3.8) BS01 dna N/A GO:0003677 ... P62805 41775336
    979781 9gfm:N (3.8) BS02 dna N/A GO:0003677 ... P62805 41775336
    979782 9gfm:O (3.8) BS01 dna N/A GO:0000786 ... P04908 41775336
    979783 9gfm:O (3.8) BS02 dna N/A GO:0000786 ... P04908 41775336
    979784 9gfm:P (3.8) BS01 dna N/A GO:0000786 ... Q16778 41775336
    979785 9gfm:P (3.8) BS02 dna N/A GO:0000786 ... Q16778 41775336
    979786 9gfm:Q (3.8) BS01 dna N/A GO:0000786 ... P68431 41775336
    979787 9gfm:Q (3.8) BS02 dna N/A GO:0000786 ... P68431 41775336
    979788 9gfm:R (3.8) BS01 dna N/A GO:0003677 ... P62805 41775336
    979789 9gfm:R (3.8) BS02 dna N/A GO:0003677 ... P62805 41775336
    979790 9gfm:S (3.8) BS01 dna N/A GO:0000786 ... P04908 41775336
    979791 9gfm:S (3.8) BS02 dna N/A GO:0000786 ... P04908 41775336
    979792 9gfm:T (3.8) BS01 dna N/A GO:0000786 ... Q16778 41775336
    979793 9gfm:T (3.8) BS02 dna N/A GO:0000786 ... Q16778 41775336
    979794 9gfs:A (1.92) BS01 SAH N/A GO:0005634 ... P0DPA9 40170967
    979795 9gfs:B (1.92) BS01 SAH N/A GO:0005634 ... P0DPA9 40170967
    979796 9gfs:C (1.92) BS01 SAH N/A GO:0005634 ... P0DPA9 40170967
    979797 9gfs:D (1.92) BS01 SAH N/A GO:0005634 ... P0DPA9 40170967
    979798 9gft:1 (3.1) BS01 rna N/A GO:0000028 ... P0A7V0 39922193
    979799 9gft:2 (3.1) BS01 rna N/A GO:0000028 ... P0A7V3 39922193
    979800 9gft:2 (3.1) BS02 rna N/A GO:0000028 ... P0A7V3 39922193

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).