SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    979801 9gft:3 (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 39922193
    979802 9gft:4 (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 39922193
    979803 9gft:4 (3.1) BS02 rna N/A GO:0000028 ... P0A7W1 39922193
    979804 9gft:5 (3.1) BS01 rna N/A GO:0002181 ... P02358 39922193
    979805 9gft:6 (3.1) BS01 rna N/A GO:0000028 ... P02359 39922193
    979806 9gft:7 (3.1) BS01 rna N/A GO:0000028 ... P0A7W7 39922193
    979807 9gft:8 (3.1) BS01 rna N/A GO:0002181 ... P0A7X3 39922193
    979808 9gft:8 (3.1) BS02 rna N/A GO:0002181 ... P0A7X3 39922193
    979809 9gft:9 (3.1) BS01 rna N/A GO:0000049 ... P0A7R5 39922193
    979810 9gft:A1 (3.1) BS01 rna N/A GO:0000028 ... P68679 39922193
    979811 9gft:AB (3.1) BS01 rna N/A GO:0000028 ... P0A7V0 39922193
    979812 9gft:AC (3.1) BS01 rna N/A GO:0000028 ... P0A7V3 39922193
    979813 9gft:AC (3.1) BS02 rna N/A GO:0000028 ... P0A7V3 39922193
    979814 9gft:AD (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 39922193
    979815 9gft:AE (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 39922193
    979816 9gft:AE (3.1) BS02 rna N/A GO:0000028 ... P0A7W1 39922193
    979817 9gft:AF (3.1) BS01 rna N/A GO:0002181 ... P02358 39922193
    979818 9gft:AG (3.1) BS01 rna N/A GO:0000028 ... P02359 39922193
    979819 9gft:AH (3.1) BS01 rna N/A GO:0000028 ... P0A7W7 39922193
    979820 9gft:AI (3.1) BS01 rna N/A GO:0002181 ... P0A7X3 39922193
    979821 9gft:AJ (3.1) BS01 rna N/A GO:0000049 ... P0A7R5 39922193
    979822 9gft:AK (3.1) BS01 rna N/A GO:0000027 ... P0A7L0 39922193
    979823 9gft:AL (3.1) BS01 rna N/A GO:0000049 ... P0A7S9 39922193
    979824 9gft:AM (3.1) BS01 rna N/A GO:0000028 ... P0AG59 39922193
    979825 9gft:AN (3.1) BS01 rna N/A GO:0000028 ... P0ADZ4 39922193
    979826 9gft:AN (3.1) BS02 rna N/A GO:0000028 ... P0ADZ4 39922193
    979827 9gft:AO (3.1) BS01 rna N/A GO:0000028 ... P0A7T3 39922193
    979828 9gft:AP (3.1) BS01 rna N/A GO:0000028 ... P0AG63 39922193
    979829 9gft:AQ (3.1) BS01 rna N/A GO:0002181 ... P0A7T7 39922193
    979830 9gft:AR (3.1) BS01 rna N/A GO:0002181 ... P0A7U3 39922193
    979831 9gft:AS (3.1) BS01 rna N/A GO:0000028 ... P0A7U7 39922193
    979832 9gft:AT (3.1) BS01 rna N/A GO:0002181 ... P0A7M9 39922193
    979833 9gft:AT (3.1) BS02 rna N/A GO:0002181 ... P0A7M9 39922193
    979834 9gft:AX (3.1) BS01 rna N/A GO:0000027 ... P60422 39922193
    979835 9gft:AY (3.1) BS01 rna N/A GO:0000027 ... P60438 39922193
    979836 9gft:AZ (3.1) BS01 rna N/A GO:0001070 ... P60723 39922193
    979837 9gft:Aa (3.1) BS01 rna N/A GO:0000027 ... P62399 39922193
    979838 9gft:Aa (3.1) BS02 rna N/A GO:0000027 ... P62399 39922193
    979839 9gft:Aa (3.1) BS03 rna N/A GO:0000027 ... P62399 39922193
    979840 9gft:Ab (3.1) BS01 rna N/A GO:0000027 ... P0AG55 39922193
    979841 9gft:Ac (3.1) BS01 rna N/A GO:0002181 ... P0A7R1 39922193
    979842 9gft:Ad (3.1) BS01 rna N/A GO:0000027 ... P0A7J7 39922193
    979843 9gft:Ae (3.1) BS01 rna N/A GO:0002181 ... P0AA10 39922193
    979844 9gft:Af (3.1) BS01 rna N/A GO:0002181 ... P0ADY3 39922193
    979845 9gft:Af (3.1) BS02 rna N/A GO:0002181 ... P0ADY3 39922193
    979846 9gft:Ag (3.1) BS01 rna N/A GO:0002181 ... P02413 39922193
    979847 9gft:Ah (3.1) BS01 rna N/A GO:0000027 ... P0ADY7 39922193
    979848 9gft:Ai (3.1) BS01 rna N/A GO:0000027 ... P0AG44 39922193
    979849 9gft:Aj (3.1) BS01 rna N/A GO:0002181 ... P0C018 39922193
    979850 9gft:Aj (3.1) BS02 rna N/A GO:0002181 ... P0C018 39922193
    979851 9gft:Ak (3.1) BS01 rna N/A GO:0000027 ... P0A7K6 39922193
    979852 9gft:Ak (3.1) BS02 rna N/A GO:0000027 ... P0A7K6 39922193
    979853 9gft:Al (3.1) BS01 rna N/A GO:0000027 ... P0A7L3 39922193
    979854 9gft:Am (3.1) BS01 rna N/A GO:0002181 ... P0AG48 39922193
    979855 9gft:An (3.1) BS01 rna N/A GO:0002181 ... P61175 39922193
    979856 9gft:Ao (3.1) BS01 rna N/A GO:0000027 ... P0ADZ0 39922193
    979857 9gft:Ap (3.1) BS01 rna N/A GO:0000027 ... P60624 39922193
    979858 9gft:Aq (3.1) BS01 rna N/A GO:0000027 ... P68919 39922193
    979859 9gft:Aq (3.1) BS02 rna N/A GO:0000027 ... P68919 39922193
    979860 9gft:Ar (3.1) BS01 rna N/A GO:0000027 ... P0A7L8 39922193
    979861 9gft:Ar (3.1) BS02 rna N/A GO:0000027 ... P0A7L8 39922193
    979862 9gft:As (3.1) BS01 rna N/A GO:0000027 ... P0A7M2 39922193
    979863 9gft:At (3.1) BS01 rna N/A GO:0000027 ... P0A7M6 39922193
    979864 9gft:Au (3.1) BS01 rna N/A GO:0000027 ... P0AG51 39922193
    979865 9gft:Av (3.1) BS01 rna N/A GO:0000027 ... P0A7N4 39922193
    979866 9gft:Aw (3.1) BS01 rna N/A GO:0000027 ... P0A7N9 39922193
    979867 9gft:Ax (3.1) BS01 rna N/A GO:0002181 ... P0A7P5 39922193
    979868 9gft:Ay (3.1) BS01 rna N/A GO:0002181 ... P0A7Q1 39922193
    979869 9gft:Az (3.1) BS01 rna N/A GO:0002181 ... P0A7Q6 39922193
    979870 9gft:B (3.1) BS01 rna N/A GO:0003676 ... P43329 39922193
    979871 9gft:B (3.1) BS02 rna N/A GO:0003676 ... P43329 39922193
    979872 9gft:B (3.1) BS03 rna N/A GO:0003676 ... P43329 39922193
    979873 9gft:C (3.1) BS01 rna N/A GO:0000027 ... P0A7L0 39922193
    979874 9gft:D (3.1) BS01 rna N/A GO:0002181 ... P0A7R9 39922193
    979875 9gft:E (3.1) BS01 rna N/A GO:0000049 ... P0A7S3 39922193
    979876 9gft:F (3.1) BS01 rna N/A GO:0000049 ... P0A7S9 39922193
    979877 9gft:G (3.1) BS01 rna N/A GO:0000028 ... P0AG59 39922193
    979878 9gft:H (3.1) BS01 rna N/A GO:0000028 ... P0ADZ4 39922193
    979879 9gft:H (3.1) BS02 rna N/A GO:0000028 ... P0ADZ4 39922193
    979880 9gft:I (3.1) BS01 rna N/A GO:0000028 ... P0A7T3 39922193
    979881 9gft:J (3.1) BS01 rna N/A GO:0000028 ... P0AG63 39922193
    979882 9gft:K (3.1) BS01 rna N/A GO:0002181 ... P0A7T7 39922193
    979883 9gft:L (3.1) BS01 rna N/A GO:0002181 ... P0A7M9 39922193
    979884 9gft:L (3.1) BS02 rna N/A GO:0002181 ... P0A7M9 39922193
    979885 9gft:P (3.1) BS01 rna N/A GO:0000027 ... P60422 39922193
    979886 9gft:P (3.1) BS02 rna N/A GO:0000027 ... P60422 39922193
    979887 9gft:Q (3.1) BS01 rna N/A GO:0000027 ... P60438 39922193
    979888 9gft:R (3.1) BS01 rna N/A GO:0001070 ... P60723 39922193
    979889 9gft:S (3.1) BS01 rna N/A GO:0000027 ... P62399 39922193
    979890 9gft:S (3.1) BS02 rna N/A GO:0000027 ... P62399 39922193
    979891 9gft:S (3.1) BS03 rna N/A GO:0000027 ... P62399 39922193
    979892 9gft:T (3.1) BS01 rna N/A GO:0000027 ... P0AG55 39922193
    979893 9gft:U (3.1) BS01 rna N/A GO:0002181 ... P0A7R1 39922193
    979894 9gft:U (3.1) BS02 rna N/A GO:0002181 ... P0A7R1 39922193
    979895 9gft:V (3.1) BS01 rna N/A GO:0000027 ... P0A7J7 39922193
    979896 9gft:W (3.1) BS01 rna N/A GO:0002181 ... P0AA10 39922193
    979897 9gft:X (3.1) BS01 rna N/A GO:0002181 ... P0ADY3 39922193
    979898 9gft:X (3.1) BS02 rna N/A GO:0002181 ... P0ADY3 39922193
    979899 9gft:Y (3.1) BS01 rna N/A GO:0002181 ... P02413 39922193
    979900 9gft:Z (3.1) BS01 rna N/A GO:0000027 ... P0ADY7 39922193
    979901 9gft:Z (3.1) BS02 rna N/A GO:0000027 ... P0ADY7 39922193
    979902 9gft:a (3.1) BS01 rna N/A GO:0000027 ... P0AG44 39922193
    979903 9gft:b (3.1) BS01 rna N/A GO:0002181 ... P0C018 39922193
    979904 9gft:b (3.1) BS02 rna N/A GO:0002181 ... P0C018 39922193
    979905 9gft:c (3.1) BS01 rna N/A GO:0000027 ... P0A7K6 39922193
    979906 9gft:c (3.1) BS02 rna N/A GO:0000027 ... P0A7K6 39922193
    979907 9gft:d (3.1) BS01 rna N/A GO:0000027 ... P0A7L3 39922193
    979908 9gft:e (3.1) BS01 rna N/A GO:0002181 ... P0AG48 39922193
    979909 9gft:f (3.1) BS01 rna N/A GO:0002181 ... P61175 39922193
    979910 9gft:g (3.1) BS01 rna N/A GO:0000027 ... P0ADZ0 39922193
    979911 9gft:h (3.1) BS01 rna N/A GO:0000027 ... P60624 39922193
    979912 9gft:i (3.1) BS01 rna N/A GO:0000027 ... P68919 39922193
    979913 9gft:i (3.1) BS02 rna N/A GO:0000027 ... P68919 39922193
    979914 9gft:j (3.1) BS01 rna N/A GO:0000027 ... P0A7L8 39922193
    979915 9gft:j (3.1) BS02 rna N/A GO:0000027 ... P0A7L8 39922193
    979916 9gft:k (3.1) BS01 rna N/A GO:0000027 ... P0A7M2 39922193
    979917 9gft:l (3.1) BS01 rna N/A GO:0000027 ... P0A7M6 39922193
    979918 9gft:m (3.1) BS01 rna N/A GO:0000027 ... P0AG51 39922193
    979919 9gft:n (3.1) BS01 rna N/A GO:0000027 ... P0A7N4 39922193
    979920 9gft:o (3.1) BS01 rna N/A GO:0000027 ... P0A7N9 39922193
    979921 9gft:p (3.1) BS01 rna N/A GO:0002181 ... P0A7P5 39922193
    979922 9gft:q (3.1) BS01 rna N/A GO:0002181 ... P0A7Q1 39922193
    979923 9gft:r (3.1) BS01 rna N/A GO:0002181 ... P0A7Q6 39922193
    979924 9gft:s (3.1) BS01 rna N/A N/A A0A2I3CPK5 39922193
    979925 9gft:t (3.1) BS01 rna N/A GO:0002181 ... P0A7U3 39922193
    979926 9gft:u (3.1) BS01 rna N/A GO:0000028 ... P0A7U7 39922193
    979927 9gft:v (3.1) BS01 rna N/A GO:0000028 ... P68679 39922193
    979928 9gft:v (3.1) BS02 rna N/A GO:0000028 ... P68679 39922193
    979929 9gft:x (3.1) BS01 rna N/A GO:0002181 ... P0A7J3 39922193
    979930 9gft:y (3.1) BS01 rna N/A GO:0002181 ... P0A7R9 39922193
    979931 9gft:z (3.1) BS01 rna N/A GO:0000049 ... P0A7S3 39922193
    979932 9gfu:A (2.1) BS01 A1IK6 N/A GO:0003677 ... P37231 N/A
    979933 9gfu:B (2.1) BS01 A1IK6 N/A GO:0003677 ... P37231 N/A
    979934 9gfv:A (1.14) BS01 ZN N/A GO:0004064 ... P00918 39454912
    979935 9gfv:A (1.14) BS02 A1IKU N/A GO:0004064 ... P00918 39454912
    979936 9gfw:A (1.07) BS01 ZN N/A GO:0004064 ... P00918 39454912
    979937 9gfw:A (1.07) BS02 A1IKU N/A GO:0004064 ... P00918 39454912
    979938 9gfx:A (1.35) BS01 ZN N/A GO:0004064 ... P00918 39454912
    979939 9gfx:A (1.35) BS02 A1IKR N/A GO:0004064 ... P00918 39454912
    979940 9gfy:A (1.23) BS01 peptide N/A GO:0004190 ... P11838 39806814
    979941 9gfz:A (2.5) BS01 ANP N/A GO:0004672 ... Q6UD73 41193803
    979942 9gg5:R (3.26) BS01 PUC N/A GO:0001669 ... P21731 41730883
    979943 9gg5:R (3.26) BS02 CLR N/A GO:0001669 ... P21731 41730883
    979944 9gg5:R (3.26) BS03 CLR N/A GO:0001669 ... P21731 41730883
    979945 9gg7:A (1.24) BS01 peptide N/A GO:0001836 ... P31947 N/A
    979946 9gg7:A (1.24) BS02 TW8 N/A GO:0001836 ... P31947 N/A
    979947 9gg7:B (1.24) BS01 peptide N/A GO:0001836 ... P31947 N/A
    979948 9gg7:B (1.24) BS02 TW8 N/A GO:0001836 ... P31947 N/A
    979949 9gg8:A (1.1) BS01 peptide N/A GO:0001836 ... P31947 N/A
    979950 9gg8:A (1.1) BS02 TW8 N/A GO:0001836 ... P31947 N/A
    979951 9gg9:A (3.0) BS01 A1IKW N/A GO:0016301 ... P48736 39635891
    979952 9gga:A (2.24) BS01 peptide N/A GO:0001836 ... P31947 N/A
    979953 9gga:A (2.24) BS02 A1IKS N/A GO:0001836 ... P31947 N/A
    979954 9ggb:A (2.63) BS01 dna N/A GO:0000262 ... P54098 40205042
    979955 9ggb:A (2.63) BS02 dna N/A GO:0000262 ... P54098 40205042
    979956 9ggb:A (2.63) BS03 CA N/A GO:0000262 ... P54098 40205042
    979957 9ggb:A (2.63) BS04 DCP N/A GO:0000262 ... P54098 40205042
    979958 9ggb:A (2.63) BS05 A1IK1 N/A GO:0000262 ... P54098 40205042
    979959 9ggb:B (2.63) BS01 A1IK1 N/A GO:0003690 ... Q9UHN1 40205042
    979960 9ggc:A (2.39) BS01 dna N/A GO:0000262 ... P54098 40205042
    979961 9ggc:A (2.39) BS02 dna N/A GO:0000262 ... P54098 40205042
    979962 9ggc:A (2.39) BS03 CA N/A GO:0000262 ... P54098 40205042
    979963 9ggc:A (2.39) BS04 DCP N/A GO:0000262 ... P54098 40205042
    979964 9ggd:A (2.67) BS01 dna N/A GO:0000262 ... P54098 40205042
    979965 9ggd:A (2.67) BS02 dna N/A GO:0000262 ... P54098 40205042
    979966 9ggd:A (2.67) BS03 CA N/A GO:0000262 ... P54098 40205042
    979967 9ggd:A (2.67) BS04 DCP N/A GO:0000262 ... P54098 40205042
    979968 9ggd:A (2.67) BS05 A1IK1 N/A GO:0000262 ... P54098 40205042
    979969 9ggd:B (2.67) BS01 A1IK1 N/A GO:0003690 ... Q9UHN1 40205042
    979970 9gge:A (2.69) BS01 dna N/A GO:0000262 ... P54098 40205042
    979971 9gge:A (2.69) BS02 dna N/A GO:0000262 ... P54098 40205042
    979972 9gge:A (2.69) BS03 CA N/A GO:0000262 ... P54098 40205042
    979973 9gge:A (2.69) BS04 DCP N/A GO:0000262 ... P54098 40205042
    979974 9ggf:A (2.65) BS01 dna N/A GO:0000262 ... P54098 40205042
    979975 9ggf:A (2.65) BS02 dna N/A GO:0000262 ... P54098 40205042
    979976 9ggf:A (2.65) BS03 CA N/A GO:0000262 ... P54098 40205042
    979977 9ggf:A (2.65) BS04 DCP N/A GO:0000262 ... P54098 40205042
    979978 9ggg:R (3.25) BS01 A1IK0 N/A GO:0001669 ... P21731 41730883
    979979 9ggg:R (3.25) BS02 CLR N/A GO:0001669 ... P21731 41730883
    979980 9ggh:A (2.14) BS01 A1IKY N/A N/A F8W4B7 39602240
    979981 9ggh:A (2.14) BS02 ZN N/A N/A F8W4B7 39602240
    979982 9ggh:A (2.14) BS03 ZN N/A N/A F8W4B7 39602240
    979983 9ggh:A (2.14) BS04 ZN N/A N/A F8W4B7 39602240
    979984 9ggh:A (2.14) BS05 ZN N/A N/A F8W4B7 39602240
    979985 9ggj:A (2.0) BS01 AS1 N/A GO:0003824 ... Q9LEU8 39384000
    979986 9ggj:A (2.0) BS02 FUM N/A GO:0003824 ... Q9LEU8 39384000
    979987 9ggj:B (2.0) BS01 AS1 N/A GO:0003824 ... Q9LEU8 39384000
    979988 9ggj:B (2.0) BS02 FUM N/A GO:0003824 ... Q9LEU8 39384000
    979989 9ggj:B (2.0) BS03 ARG N/A GO:0003824 ... Q9LEU8 39384000
    979990 9ggj:C (2.0) BS01 ARG N/A GO:0003824 ... Q9LEU8 39384000
    979991 9ggj:C (2.0) BS02 AS1 N/A GO:0003824 ... Q9LEU8 39384000
    979992 9ggj:D (2.0) BS01 AS1 N/A GO:0003824 ... Q9LEU8 39384000
    979993 9ggj:E (2.0) BS01 AS1 N/A GO:0003824 ... Q9LEU8 39384000
    979994 9ggj:E (2.0) BS02 FUM N/A GO:0003824 ... Q9LEU8 39384000
    979995 9ggj:F (2.0) BS01 AS1 N/A GO:0003824 ... Q9LEU8 39384000
    979996 9ggj:F (2.0) BS02 ARG N/A GO:0003824 ... Q9LEU8 39384000
    979997 9ggj:G (2.0) BS01 AS1 N/A GO:0003824 ... Q9LEU8 39384000
    979998 9ggj:G (2.0) BS02 AS1 N/A GO:0003824 ... Q9LEU8 39384000
    979999 9ggj:H (2.0) BS01 AS1 N/A GO:0003824 ... Q9LEU8 39384000
    980000 9ggj:H (2.0) BS02 AS1 N/A GO:0003824 ... Q9LEU8 39384000

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).