SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    980001 9ggk:A (1.9) BS01 A1IK2 N/A N/A F8W4B7 39602240
    980002 9ggk:A (1.9) BS02 ZN N/A N/A F8W4B7 39602240
    980003 9ggk:A (1.9) BS03 ZN N/A N/A F8W4B7 39602240
    980004 9ggk:A (1.9) BS04 ZN N/A N/A F8W4B7 39602240
    980005 9ggl:A (3.13) BS01 A1ACV N/A GO:0043161 ... Q9NVX7 40175372
    980006 9ggl:B (3.13) BS01 ZN N/A GO:0000118 ... Q92769 40175372
    980007 9ggl:B (3.13) BS02 A1ACV N/A GO:0000118 ... Q92769 40175372
    980008 9ggm:B (2.71) BS01 ZN N/A GO:0000118 ... Q92769 40175372
    980009 9ggm:D (2.71) BS01 ZN N/A GO:0000118 ... Q92769 40175372
    980010 9ggn:A (2.9) BS01 A1ACV N/A GO:0043161 ... Q9NVX7 40175372
    980011 9ggn:B (2.9) BS01 A1ACV N/A GO:0000118 ... Q92769 40175372
    980012 9ggn:B (2.9) BS02 ZN N/A GO:0000118 ... Q92769 40175372
    980013 9ggn:C (2.9) BS01 A1ACV N/A GO:0043161 ... Q9NVX7 40175372
    980014 9ggn:D (2.9) BS01 A1ACV N/A GO:0000118 ... Q92769 40175372
    980015 9ggn:D (2.9) BS02 ZN N/A GO:0000118 ... Q92769 40175372
    980016 9ggo:A (2.0) BS01 CU N/A N/A N/A 39866698
    980017 9ggo:A (2.0) BS02 CU N/A N/A N/A 39866698
    980018 9ggq:A (2.6) BS01 dna N/A GO:0003677 ... P0AES4 39589884
    980019 9ggq:A (2.6) BS02 dna N/A GO:0003677 ... P0AES4 39589884
    980020 9ggq:B (2.6) BS01 dna N/A GO:0003677 ... P0AES6 39589884
    980021 9ggq:B (2.6) BS02 dna N/A GO:0003677 ... P0AES6 39589884
    980022 9ggq:C (2.6) BS01 dna N/A GO:0003677 ... P0AES4 39589884
    980023 9ggq:C (2.6) BS02 dna N/A GO:0003677 ... P0AES4 39589884
    980024 9ggq:D (2.6) BS01 dna N/A GO:0003677 ... P0AES6 39589884
    980025 9ggq:D (2.6) BS02 dna N/A GO:0003677 ... P0AES6 39589884
    980026 9ggr:1 (3.2) BS01 rna N/A GO:0000028 ... P0A7V0 39922193
    980027 9ggr:2 (3.2) BS01 rna N/A GO:0000028 ... P0A7V3 39922193
    980028 9ggr:2 (3.2) BS02 rna N/A GO:0000028 ... P0A7V3 39922193
    980029 9ggr:3 (3.2) BS01 rna N/A GO:0000028 ... P0A7V8 39922193
    980030 9ggr:4 (3.2) BS01 rna N/A GO:0000028 ... P0A7W1 39922193
    980031 9ggr:4 (3.2) BS02 rna N/A GO:0000028 ... P0A7W1 39922193
    980032 9ggr:5 (3.2) BS01 rna N/A GO:0002181 ... P02358 39922193
    980033 9ggr:6 (3.2) BS01 rna N/A GO:0000028 ... P02359 39922193
    980034 9ggr:6 (3.2) BS02 rna N/A GO:0000028 ... P02359 39922193
    980035 9ggr:7 (3.2) BS01 rna N/A GO:0000028 ... P0A7W7 39922193
    980036 9ggr:8 (3.2) BS01 rna N/A GO:0002181 ... P0A7X3 39922193
    980037 9ggr:8 (3.2) BS02 rna N/A GO:0002181 ... P0A7X3 39922193
    980038 9ggr:9 (3.2) BS01 rna N/A GO:0000049 ... P0A7R5 39922193
    980039 9ggr:A1 (3.2) BS01 rna N/A GO:0000028 ... P68679 39922193
    980040 9ggr:AB (3.2) BS01 rna N/A GO:0000028 ... P0A7V0 39922193
    980041 9ggr:AC (3.2) BS01 rna N/A GO:0000028 ... P0A7V3 39922193
    980042 9ggr:AC (3.2) BS02 rna N/A GO:0000028 ... P0A7V3 39922193
    980043 9ggr:AD (3.2) BS01 rna N/A GO:0000028 ... P0A7V8 39922193
    980044 9ggr:AE (3.2) BS01 rna N/A GO:0000028 ... P0A7W1 39922193
    980045 9ggr:AE (3.2) BS02 rna N/A GO:0000028 ... P0A7W1 39922193
    980046 9ggr:AF (3.2) BS01 rna N/A GO:0002181 ... P02358 39922193
    980047 9ggr:AG (3.2) BS01 rna N/A GO:0000028 ... P02359 39922193
    980048 9ggr:AH (3.2) BS01 rna N/A GO:0000028 ... P0A7W7 39922193
    980049 9ggr:AI (3.2) BS01 rna N/A GO:0002181 ... P0A7X3 39922193
    980050 9ggr:AJ (3.2) BS01 rna N/A GO:0000049 ... P0A7R5 39922193
    980051 9ggr:AK (3.2) BS01 rna N/A GO:0000027 ... P0A7L0 39922193
    980052 9ggr:AL (3.2) BS01 rna N/A GO:0000049 ... P0A7S9 39922193
    980053 9ggr:AM (3.2) BS01 rna N/A GO:0000028 ... P0AG59 39922193
    980054 9ggr:AN (3.2) BS01 rna N/A GO:0000028 ... P0ADZ4 39922193
    980055 9ggr:AN (3.2) BS02 rna N/A GO:0000028 ... P0ADZ4 39922193
    980056 9ggr:AO (3.2) BS01 rna N/A GO:0000028 ... P0A7T3 39922193
    980057 9ggr:AP (3.2) BS01 rna N/A GO:0000028 ... P0AG63 39922193
    980058 9ggr:AQ (3.2) BS01 rna N/A GO:0002181 ... P0A7T7 39922193
    980059 9ggr:AR (3.2) BS01 rna N/A GO:0002181 ... P0A7U3 39922193
    980060 9ggr:AS (3.2) BS01 rna N/A GO:0000028 ... P0A7U7 39922193
    980061 9ggr:AT (3.2) BS01 rna N/A GO:0002181 ... P0A7M9 39922193
    980062 9ggr:AT (3.2) BS02 rna N/A GO:0002181 ... P0A7M9 39922193
    980063 9ggr:AX (3.2) BS01 rna N/A GO:0000027 ... P60422 39922193
    980064 9ggr:AY (3.2) BS01 rna N/A GO:0000027 ... P60438 39922193
    980065 9ggr:AZ (3.2) BS01 rna N/A GO:0001070 ... P60723 39922193
    980066 9ggr:Aa (3.2) BS01 rna N/A GO:0000027 ... P62399 39922193
    980067 9ggr:Aa (3.2) BS02 rna N/A GO:0000027 ... P62399 39922193
    980068 9ggr:Aa (3.2) BS03 rna N/A GO:0000027 ... P62399 39922193
    980069 9ggr:Ab (3.2) BS01 rna N/A GO:0000027 ... P0AG55 39922193
    980070 9ggr:Ac (3.2) BS01 rna N/A GO:0002181 ... P0A7R1 39922193
    980071 9ggr:Ad (3.2) BS01 rna N/A GO:0000027 ... P0A7J7 39922193
    980072 9ggr:Ae (3.2) BS01 rna N/A GO:0002181 ... P0AA10 39922193
    980073 9ggr:Af (3.2) BS01 rna N/A GO:0002181 ... P0ADY3 39922193
    980074 9ggr:Af (3.2) BS02 rna N/A GO:0002181 ... P0ADY3 39922193
    980075 9ggr:Ag (3.2) BS01 rna N/A GO:0002181 ... P02413 39922193
    980076 9ggr:Ah (3.2) BS01 rna N/A GO:0000027 ... P0ADY7 39922193
    980077 9ggr:Ah (3.2) BS02 rna N/A GO:0000027 ... P0ADY7 39922193
    980078 9ggr:Ai (3.2) BS01 rna N/A GO:0000027 ... P0AG44 39922193
    980079 9ggr:Aj (3.2) BS01 rna N/A GO:0002181 ... P0C018 39922193
    980080 9ggr:Aj (3.2) BS02 rna N/A GO:0002181 ... P0C018 39922193
    980081 9ggr:Ak (3.2) BS01 rna N/A GO:0000027 ... P0A7K6 39922193
    980082 9ggr:Ak (3.2) BS02 rna N/A GO:0000027 ... P0A7K6 39922193
    980083 9ggr:Al (3.2) BS01 rna N/A GO:0000027 ... P0A7L3 39922193
    980084 9ggr:Am (3.2) BS01 rna N/A GO:0002181 ... P0AG48 39922193
    980085 9ggr:An (3.2) BS01 rna N/A GO:0002181 ... P61175 39922193
    980086 9ggr:Ao (3.2) BS01 rna N/A GO:0000027 ... P0ADZ0 39922193
    980087 9ggr:Ap (3.2) BS01 rna N/A GO:0000027 ... P60624 39922193
    980088 9ggr:Aq (3.2) BS01 rna N/A GO:0000027 ... P68919 39922193
    980089 9ggr:Aq (3.2) BS02 rna N/A GO:0000027 ... P68919 39922193
    980090 9ggr:Ar (3.2) BS01 rna N/A GO:0000027 ... P0A7L8 39922193
    980091 9ggr:Ar (3.2) BS02 rna N/A GO:0000027 ... P0A7L8 39922193
    980092 9ggr:As (3.2) BS01 rna N/A GO:0000027 ... P0A7M2 39922193
    980093 9ggr:At (3.2) BS01 rna N/A GO:0000027 ... P0A7M6 39922193
    980094 9ggr:Au (3.2) BS01 rna N/A GO:0000027 ... P0AG51 39922193
    980095 9ggr:Av (3.2) BS01 rna N/A GO:0000027 ... P0A7N4 39922193
    980096 9ggr:Aw (3.2) BS01 rna N/A GO:0000027 ... P0A7N9 39922193
    980097 9ggr:Ax (3.2) BS01 rna N/A GO:0002181 ... P0A7P5 39922193
    980098 9ggr:Ay (3.2) BS01 rna N/A GO:0002181 ... P0A7Q1 39922193
    980099 9ggr:Az (3.2) BS01 rna N/A GO:0002181 ... P0A7Q6 39922193
    980100 9ggr:B (3.2) BS01 rna N/A GO:0003676 ... P43329 39922193
    980101 9ggr:B (3.2) BS02 rna N/A GO:0003676 ... P43329 39922193
    980102 9ggr:B (3.2) BS03 rna N/A GO:0003676 ... P43329 39922193
    980103 9ggr:C (3.2) BS01 rna N/A GO:0000027 ... P0A7L0 39922193
    980104 9ggr:D (3.2) BS01 rna N/A GO:0002181 ... P0A7R9 39922193
    980105 9ggr:E (3.2) BS01 rna N/A GO:0000049 ... P0A7S3 39922193
    980106 9ggr:F (3.2) BS01 rna N/A GO:0000049 ... P0A7S9 39922193
    980107 9ggr:G (3.2) BS01 rna N/A GO:0000028 ... P0AG59 39922193
    980108 9ggr:H (3.2) BS01 rna N/A GO:0000028 ... P0ADZ4 39922193
    980109 9ggr:H (3.2) BS02 rna N/A GO:0000028 ... P0ADZ4 39922193
    980110 9ggr:I (3.2) BS01 rna N/A GO:0000028 ... P0A7T3 39922193
    980111 9ggr:J (3.2) BS01 rna N/A GO:0000028 ... P0AG63 39922193
    980112 9ggr:K (3.2) BS01 rna N/A GO:0002181 ... P0A7T7 39922193
    980113 9ggr:L (3.2) BS01 rna N/A GO:0002181 ... P0A7M9 39922193
    980114 9ggr:L (3.2) BS02 rna N/A GO:0002181 ... P0A7M9 39922193
    980115 9ggr:P (3.2) BS01 rna N/A GO:0000027 ... P60422 39922193
    980116 9ggr:P (3.2) BS02 rna N/A GO:0000027 ... P60422 39922193
    980117 9ggr:Q (3.2) BS01 rna N/A GO:0000027 ... P60438 39922193
    980118 9ggr:R (3.2) BS01 rna N/A GO:0001070 ... P60723 39922193
    980119 9ggr:S (3.2) BS01 rna N/A GO:0000027 ... P62399 39922193
    980120 9ggr:S (3.2) BS02 rna N/A GO:0000027 ... P62399 39922193
    980121 9ggr:S (3.2) BS03 rna N/A GO:0000027 ... P62399 39922193
    980122 9ggr:T (3.2) BS01 rna N/A GO:0000027 ... P0AG55 39922193
    980123 9ggr:U (3.2) BS01 rna N/A GO:0002181 ... P0A7R1 39922193
    980124 9ggr:U (3.2) BS02 rna N/A GO:0002181 ... P0A7R1 39922193
    980125 9ggr:V (3.2) BS01 rna N/A GO:0000027 ... P0A7J7 39922193
    980126 9ggr:W (3.2) BS01 rna N/A GO:0002181 ... P0AA10 39922193
    980127 9ggr:X (3.2) BS01 rna N/A GO:0002181 ... P0ADY3 39922193
    980128 9ggr:X (3.2) BS02 rna N/A GO:0002181 ... P0ADY3 39922193
    980129 9ggr:Y (3.2) BS01 rna N/A GO:0002181 ... P02413 39922193
    980130 9ggr:Z (3.2) BS01 rna N/A GO:0000027 ... P0ADY7 39922193
    980131 9ggr:Z (3.2) BS02 rna N/A GO:0000027 ... P0ADY7 39922193
    980132 9ggr:a (3.2) BS01 rna N/A GO:0000027 ... P0AG44 39922193
    980133 9ggr:b (3.2) BS01 rna N/A GO:0002181 ... P0C018 39922193
    980134 9ggr:b (3.2) BS02 rna N/A GO:0002181 ... P0C018 39922193
    980135 9ggr:c (3.2) BS01 rna N/A GO:0000027 ... P0A7K6 39922193
    980136 9ggr:c (3.2) BS02 rna N/A GO:0000027 ... P0A7K6 39922193
    980137 9ggr:d (3.2) BS01 rna N/A GO:0000027 ... P0A7L3 39922193
    980138 9ggr:e (3.2) BS01 rna N/A GO:0002181 ... P0AG48 39922193
    980139 9ggr:f (3.2) BS01 rna N/A GO:0002181 ... P61175 39922193
    980140 9ggr:g (3.2) BS01 rna N/A GO:0000027 ... P0ADZ0 39922193
    980141 9ggr:h (3.2) BS01 rna N/A GO:0000027 ... P60624 39922193
    980142 9ggr:i (3.2) BS01 rna N/A GO:0000027 ... P68919 39922193
    980143 9ggr:i (3.2) BS02 rna N/A GO:0000027 ... P68919 39922193
    980144 9ggr:j (3.2) BS01 rna N/A GO:0000027 ... P0A7L8 39922193
    980145 9ggr:j (3.2) BS02 rna N/A GO:0000027 ... P0A7L8 39922193
    980146 9ggr:k (3.2) BS01 rna N/A GO:0000027 ... P0A7M2 39922193
    980147 9ggr:l (3.2) BS01 rna N/A GO:0000027 ... P0A7M6 39922193
    980148 9ggr:m (3.2) BS01 rna N/A GO:0000027 ... P0AG51 39922193
    980149 9ggr:m (3.2) BS02 rna N/A GO:0000027 ... P0AG51 39922193
    980150 9ggr:n (3.2) BS01 rna N/A GO:0000027 ... P0A7N4 39922193
    980151 9ggr:o (3.2) BS01 rna N/A GO:0000027 ... P0A7N9 39922193
    980152 9ggr:p (3.2) BS01 rna N/A GO:0002181 ... P0A7P5 39922193
    980153 9ggr:q (3.2) BS01 rna N/A GO:0002181 ... P0A7Q1 39922193
    980154 9ggr:r (3.2) BS01 rna N/A GO:0002181 ... P0A7Q6 39922193
    980155 9ggr:s (3.2) BS01 rna N/A N/A A0A2I3CPK5 39922193
    980156 9ggr:t (3.2) BS01 rna N/A GO:0002181 ... P0A7U3 39922193
    980157 9ggr:u (3.2) BS01 rna N/A GO:0000028 ... P0A7U7 39922193
    980158 9ggr:v (3.2) BS01 rna N/A GO:0000028 ... P68679 39922193
    980159 9ggr:v (3.2) BS02 rna N/A GO:0000028 ... P68679 39922193
    980160 9ggr:x (3.2) BS01 rna N/A GO:0002181 ... P0A7J3 39922193
    980161 9ggr:y (3.2) BS01 rna N/A GO:0002181 ... P0A7R9 39922193
    980162 9ggr:z (3.2) BS01 rna N/A GO:0000049 ... P0A7S3 39922193
    980163 9ggt:A (1.71) BS01 GDP N/A GO:0003924 ... P01116 40162713
    980164 9ggt:A (1.71) BS02 A1IK7 N/A GO:0003924 ... P01116 40162713
    980165 9ggu:A (1.6) BS01 GDP N/A GO:0003924 ... P01116 40162713
    980166 9ggu:A (1.6) BS02 A1IMC N/A GO:0003924 ... P01116 40162713
    980167 9ggv:A (1.19) BS01 GDP N/A GO:0003924 ... P01116 40162713
    980168 9ggv:A (1.19) BS02 A1IK9 N/A GO:0003924 ... P01116 40162713
    980169 9ggw:A (1.82) BS01 GDP N/A GO:0003924 ... P01116 40162713
    980170 9ggw:A (1.82) BS02 A1ILA N/A GO:0003924 ... P01116 40162713
    980171 9ggw:B (1.82) BS01 GDP N/A GO:0003924 ... P01116 40162713
    980172 9ggw:B (1.82) BS02 A1ILA N/A GO:0003924 ... P01116 40162713
    980173 9ggx:A (1.3) BS01 GNP N/A GO:0003924 ... P01116 40162713
    980174 9ggx:A (1.3) BS02 CO N/A GO:0003924 ... P01116 40162713
    980175 9ggx:A (1.3) BS03 A1IMB N/A GO:0003924 ... P01116 40162713
    980176 9ggy:A (1.266) BS01 GDP N/A GO:0003924 ... P01116 40162713
    980177 9ggy:A (1.266) BS02 A1IK3 N/A GO:0003924 ... P01116 40162713
    980178 9ggz:A (1.37) BS01 GNP N/A GO:0003924 ... P01116 40162713
    980179 9ggz:A (1.37) BS02 CO N/A GO:0003924 ... P01116 40162713
    980180 9ggz:A (1.37) BS03 A1IK8 N/A GO:0003924 ... P01116 40162713
    980181 9gh0:A (1.57) BS01 GNP N/A GO:0003924 ... P01116 40162713
    980182 9gh0:A (1.57) BS02 CO N/A GO:0003924 ... P01116 40162713
    980183 9gh0:A (1.57) BS03 A1IMA N/A GO:0003924 ... P01116 40162713
    980184 9gh1:A (1.33) BS01 GNP N/A GO:0003924 ... P01116 40162713
    980185 9gh1:A (1.33) BS02 CO N/A GO:0003924 ... P01116 40162713
    980186 9gh1:A (1.33) BS03 A1IK5 N/A GO:0003924 ... P01116 40162713
    980187 9gh2:A (1.35) BS01 GNP N/A GO:0003924 ... P01116 40162713
    980188 9gh2:A (1.35) BS02 CO N/A GO:0003924 ... P01116 40162713
    980189 9gh2:A (1.35) BS03 A1ILF N/A GO:0003924 ... P01116 40162713
    980190 9gh7:A (2.079) BS01 peptide N/A GO:0004998 ... P02786 40207629
    980191 9gh7:A (2.079) BS02 CA N/A GO:0004998 ... P02786 40207629
    980192 9gh7:A (2.079) BS03 A1ILE N/A GO:0004998 ... P02786 40207629
    980193 9gh9:A (1.49) BS01 PLP N/A GO:0030170 ... A0A7Y6F089 40796981
    980194 9gh9:B (1.49) BS01 PLP N/A GO:0030170 ... A0A7Y6F089 40796981
    980195 9gha:0 (2.24) BS01 rna N/A GO:0000027 ... P0A7N9 40251147
    980196 9gha:1 (2.24) BS01 rna N/A GO:0002181 ... P0A7P5 40251147
    980197 9gha:2 (2.24) BS01 rna N/A GO:0002181 ... P0A7Q1 40251147
    980198 9gha:3 (2.24) BS01 rna N/A GO:0002181 ... P0A7Q6 40251147
    980199 9gha:3 (2.24) BS02 ZN N/A GO:0002181 ... P0A7Q6 40251147
    980200 9gha:4 (2.24) BS01 rna N/A GO:0002181 ... P0A7M9 40251147

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).