SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    980401 9ghd:4 (2.41) BS01 rna N/A GO:0002181 ... P0A7M9 40251147
    980402 9ghd:4 (2.41) BS02 rna N/A GO:0002181 ... P0A7M9 40251147
    980403 9ghd:4 (2.41) BS03 ZN N/A GO:0002181 ... P0A7M9 40251147
    980404 9ghd:B (2.41) BS01 rna N/A GO:0000028 ... P0A7V0 40251147
    980405 9ghd:C (2.41) BS01 rna N/A GO:0000028 ... P0A7V3 40251147
    980406 9ghd:D (2.41) BS01 rna N/A GO:0000028 ... P0A7V8 40251147
    980407 9ghd:E (2.41) BS01 rna N/A GO:0000028 ... P0A7W1 40251147
    980408 9ghd:F (2.41) BS01 rna N/A GO:0002181 ... P02358 40251147
    980409 9ghd:G (2.41) BS01 rna N/A GO:0000028 ... P02359 40251147
    980410 9ghd:H (2.41) BS01 rna N/A GO:0000028 ... P0A7W7 40251147
    980411 9ghd:I (2.41) BS01 rna N/A GO:0002181 ... P0A7X3 40251147
    980412 9ghd:J (2.41) BS01 rna N/A GO:0000049 ... P0A7R5 40251147
    980413 9ghd:K (2.41) BS01 rna N/A GO:0002181 ... P0A7R9 40251147
    980414 9ghd:L (2.41) BS01 rna N/A GO:0000049 ... P0A7S3 40251147
    980415 9ghd:M (2.41) BS01 rna N/A GO:0000049 ... P0A7S9 40251147
    980416 9ghd:N (2.41) BS01 rna N/A GO:0000028 ... P0AG59 40251147
    980417 9ghd:O (2.41) BS01 rna N/A GO:0000028 ... P0ADZ4 40251147
    980418 9ghd:O (2.41) BS02 rna N/A GO:0000028 ... P0ADZ4 40251147
    980419 9ghd:P (2.41) BS01 rna N/A GO:0000028 ... P0A7T3 40251147
    980420 9ghd:Q (2.41) BS01 rna N/A GO:0000028 ... P0AG63 40251147
    980421 9ghd:R (2.41) BS01 rna N/A GO:0002181 ... P0A7T7 40251147
    980422 9ghd:S (2.41) BS01 rna N/A GO:0002181 ... P0A7U3 40251147
    980423 9ghd:T (2.41) BS01 rna N/A GO:0000028 ... P0A7U7 40251147
    980424 9ghd:U (2.41) BS01 rna N/A GO:0000028 ... P68679 40251147
    980425 9ghd:V (2.41) BS01 rna N/A GO:0005515 ... Q8GNY5 40251147
    980426 9ghd:V (2.41) BS02 rna N/A GO:0005515 ... Q8GNY5 40251147
    980427 9ghd:W (2.41) BS01 rna N/A GO:0003746 ... Q2G0N1 40251147
    980428 9ghd:c (2.41) BS01 rna N/A GO:0000027 ... P60422 40251147
    980429 9ghd:c (2.41) BS02 MG N/A GO:0000027 ... P60422 40251147
    980430 9ghd:d (2.41) BS01 rna N/A GO:0000027 ... P60438 40251147
    980431 9ghd:e (2.41) BS01 rna N/A GO:0001070 ... P60723 40251147
    980432 9ghd:f (2.41) BS01 rna N/A GO:0000027 ... P62399 40251147
    980433 9ghd:f (2.41) BS02 rna N/A GO:0000027 ... P62399 40251147
    980434 9ghd:f (2.41) BS03 rna N/A GO:0000027 ... P62399 40251147
    980435 9ghd:g (2.41) BS01 rna N/A GO:0000027 ... P0AG55 40251147
    980436 9ghd:h (2.41) BS01 rna N/A GO:0002181 ... P0A7R1 40251147
    980437 9ghd:i (2.41) BS01 rna N/A GO:0002181 ... P0AA10 40251147
    980438 9ghd:j (2.41) BS01 rna N/A GO:0002181 ... P0ADY3 40251147
    980439 9ghd:j (2.41) BS02 rna N/A GO:0002181 ... P0ADY3 40251147
    980440 9ghd:k (2.41) BS01 rna N/A GO:0002181 ... P02413 40251147
    980441 9ghd:l (2.41) BS01 rna N/A GO:0000027 ... P0ADY7 40251147
    980442 9ghd:l (2.41) BS02 rna N/A GO:0000027 ... P0ADY7 40251147
    980443 9ghd:m (2.41) BS01 rna N/A GO:0000027 ... P0AG44 40251147
    980444 9ghd:n (2.41) BS01 rna N/A GO:0002181 ... P0C018 40251147
    980445 9ghd:n (2.41) BS02 rna N/A GO:0002181 ... P0C018 40251147
    980446 9ghd:o (2.41) BS01 rna N/A GO:0000027 ... P0A7K6 40251147
    980447 9ghd:o (2.41) BS02 rna N/A GO:0000027 ... P0A7K6 40251147
    980448 9ghd:p (2.41) BS01 rna N/A GO:0000027 ... P0A7L3 40251147
    980449 9ghd:q (2.41) BS01 rna N/A GO:0002181 ... P0AG48 40251147
    980450 9ghd:r (2.41) BS01 rna N/A GO:0002181 ... P61175 40251147
    980451 9ghd:s (2.41) BS01 rna N/A GO:0000027 ... P0ADZ0 40251147
    980452 9ghd:t (2.41) BS01 rna N/A GO:0000027 ... P60624 40251147
    980453 9ghd:u (2.41) BS01 rna N/A GO:0000027 ... P68919 40251147
    980454 9ghd:v (2.41) BS01 rna N/A GO:0000027 ... P0A7L8 40251147
    980455 9ghd:v (2.41) BS02 rna N/A GO:0000027 ... P0A7L8 40251147
    980456 9ghd:w (2.41) BS01 rna N/A GO:0000027 ... P0A7M2 40251147
    980457 9ghd:x (2.41) BS01 rna N/A GO:0000027 ... P0A7M6 40251147
    980458 9ghd:y (2.41) BS01 rna N/A GO:0000027 ... P0AG51 40251147
    980459 9ghd:y (2.41) BS02 rna N/A GO:0000027 ... P0AG51 40251147
    980460 9ghd:z (2.41) BS01 rna N/A GO:0000027 ... P0A7N4 40251147
    980461 9ghe:0 (1.87) BS01 rna N/A GO:0000027 ... P0A7N9 40251147
    980462 9ghe:1 (1.87) BS01 rna N/A GO:0002181 ... P0A7P5 40251147
    980463 9ghe:2 (1.87) BS01 rna N/A GO:0002181 ... P0A7Q1 40251147
    980464 9ghe:3 (1.87) BS01 rna N/A GO:0002181 ... P0A7Q6 40251147
    980465 9ghe:3 (1.87) BS02 ZN N/A GO:0002181 ... P0A7Q6 40251147
    980466 9ghe:4 (1.87) BS01 rna N/A GO:0002181 ... P0A7M9 40251147
    980467 9ghe:4 (1.87) BS02 ZN N/A GO:0002181 ... P0A7M9 40251147
    980468 9ghe:B (1.87) BS01 rna N/A GO:0000028 ... P0A7V0 40251147
    980469 9ghe:C (1.87) BS01 rna N/A GO:0000028 ... P0A7V3 40251147
    980470 9ghe:D (1.87) BS01 rna N/A GO:0000028 ... P0A7V8 40251147
    980471 9ghe:E (1.87) BS01 rna N/A GO:0000028 ... P0A7W1 40251147
    980472 9ghe:F (1.87) BS01 rna N/A GO:0002181 ... P02358 40251147
    980473 9ghe:G (1.87) BS01 rna N/A GO:0000028 ... P02359 40251147
    980474 9ghe:H (1.87) BS01 rna N/A GO:0000028 ... P0A7W7 40251147
    980475 9ghe:I (1.87) BS01 rna N/A GO:0002181 ... P0A7X3 40251147
    980476 9ghe:J (1.87) BS01 rna N/A GO:0000049 ... P0A7R5 40251147
    980477 9ghe:K (1.87) BS01 rna N/A GO:0002181 ... P0A7R9 40251147
    980478 9ghe:L (1.87) BS01 rna N/A GO:0000049 ... P0A7S3 40251147
    980479 9ghe:M (1.87) BS01 rna N/A GO:0000049 ... P0A7S9 40251147
    980480 9ghe:N (1.87) BS01 rna N/A GO:0000028 ... P0AG59 40251147
    980481 9ghe:O (1.87) BS01 rna N/A GO:0000028 ... P0ADZ4 40251147
    980482 9ghe:O (1.87) BS02 rna N/A GO:0000028 ... P0ADZ4 40251147
    980483 9ghe:P (1.87) BS01 rna N/A GO:0000028 ... P0A7T3 40251147
    980484 9ghe:Q (1.87) BS01 rna N/A GO:0000028 ... P0AG63 40251147
    980485 9ghe:R (1.87) BS01 rna N/A GO:0002181 ... P0A7T7 40251147
    980486 9ghe:S (1.87) BS01 rna N/A GO:0002181 ... P0A7U3 40251147
    980487 9ghe:T (1.87) BS01 rna N/A GO:0000028 ... P0A7U7 40251147
    980488 9ghe:U (1.87) BS01 rna N/A GO:0000028 ... P68679 40251147
    980489 9ghe:V (1.87) BS01 rna N/A GO:0005515 ... Q8GNY5 40251147
    980490 9ghe:V (1.87) BS02 rna N/A GO:0005515 ... Q8GNY5 40251147
    980491 9ghe:V (1.87) BS03 ZN N/A GO:0005515 ... Q8GNY5 40251147
    980492 9ghe:c (1.87) BS01 rna N/A GO:0000027 ... P60422 40251147
    980493 9ghe:c (1.87) BS02 MG N/A GO:0000027 ... P60422 40251147
    980494 9ghe:d (1.87) BS01 rna N/A GO:0000027 ... P60438 40251147
    980495 9ghe:e (1.87) BS01 rna N/A GO:0001070 ... P60723 40251147
    980496 9ghe:f (1.87) BS01 rna N/A GO:0000027 ... P62399 40251147
    980497 9ghe:f (1.87) BS02 rna N/A GO:0000027 ... P62399 40251147
    980498 9ghe:f (1.87) BS03 rna N/A GO:0000027 ... P62399 40251147
    980499 9ghe:g (1.87) BS01 rna N/A GO:0000027 ... P0AG55 40251147
    980500 9ghe:h (1.87) BS01 rna N/A GO:0002181 ... P0A7R1 40251147
    980501 9ghe:i (1.87) BS01 rna N/A GO:0002181 ... P0AA10 40251147
    980502 9ghe:j (1.87) BS01 rna N/A GO:0002181 ... P0ADY3 40251147
    980503 9ghe:j (1.87) BS02 rna N/A GO:0002181 ... P0ADY3 40251147
    980504 9ghe:k (1.87) BS01 rna N/A GO:0002181 ... P02413 40251147
    980505 9ghe:l (1.87) BS01 rna N/A GO:0000027 ... P0ADY7 40251147
    980506 9ghe:l (1.87) BS02 rna N/A GO:0000027 ... P0ADY7 40251147
    980507 9ghe:m (1.87) BS01 rna N/A GO:0000027 ... P0AG44 40251147
    980508 9ghe:n (1.87) BS01 rna N/A GO:0002181 ... P0C018 40251147
    980509 9ghe:n (1.87) BS02 rna N/A GO:0002181 ... P0C018 40251147
    980510 9ghe:o (1.87) BS01 rna N/A GO:0000027 ... P0A7K6 40251147
    980511 9ghe:o (1.87) BS02 rna N/A GO:0000027 ... P0A7K6 40251147
    980512 9ghe:p (1.87) BS01 rna N/A GO:0000027 ... P0A7L3 40251147
    980513 9ghe:q (1.87) BS01 rna N/A GO:0002181 ... P0AG48 40251147
    980514 9ghe:r (1.87) BS01 rna N/A GO:0002181 ... P61175 40251147
    980515 9ghe:s (1.87) BS01 rna N/A GO:0000027 ... P0ADZ0 40251147
    980516 9ghe:t (1.87) BS01 rna N/A GO:0000027 ... P60624 40251147
    980517 9ghe:u (1.87) BS01 rna N/A GO:0000027 ... P68919 40251147
    980518 9ghe:v (1.87) BS01 rna N/A GO:0000027 ... P0A7L8 40251147
    980519 9ghe:v (1.87) BS02 rna N/A GO:0000027 ... P0A7L8 40251147
    980520 9ghe:w (1.87) BS01 rna N/A GO:0000027 ... P0A7M2 40251147
    980521 9ghe:x (1.87) BS01 rna N/A GO:0000027 ... P0A7M6 40251147
    980522 9ghe:y (1.87) BS01 rna N/A GO:0000027 ... P0AG51 40251147
    980523 9ghe:y (1.87) BS02 rna N/A GO:0000027 ... P0AG51 40251147
    980524 9ghe:z (1.87) BS01 rna N/A GO:0000027 ... P0A7N4 40251147
    980525 9ghf:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 40251147
    980526 9ghf:1 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 40251147
    980527 9ghf:2 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 40251147
    980528 9ghf:3 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q6 40251147
    980529 9ghf:3 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 40251147
    980530 9ghf:4 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 40251147
    980531 9ghf:4 (2.4) BS02 rna N/A GO:0002181 ... P0A7M9 40251147
    980532 9ghf:4 (2.4) BS03 ZN N/A GO:0002181 ... P0A7M9 40251147
    980533 9ghf:B (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 40251147
    980534 9ghf:C (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 40251147
    980535 9ghf:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 40251147
    980536 9ghf:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 40251147
    980537 9ghf:F (2.4) BS01 rna N/A GO:0002181 ... P02358 40251147
    980538 9ghf:G (2.4) BS01 rna N/A GO:0000028 ... P02359 40251147
    980539 9ghf:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 40251147
    980540 9ghf:I (2.4) BS01 rna N/A GO:0002181 ... P0A7X3 40251147
    980541 9ghf:J (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 40251147
    980542 9ghf:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 40251147
    980543 9ghf:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 40251147
    980544 9ghf:M (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 40251147
    980545 9ghf:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 40251147
    980546 9ghf:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 40251147
    980547 9ghf:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 40251147
    980548 9ghf:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 40251147
    980549 9ghf:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 40251147
    980550 9ghf:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 40251147
    980551 9ghf:S (2.4) BS01 rna N/A GO:0002181 ... P0A7U3 40251147
    980552 9ghf:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 40251147
    980553 9ghf:U (2.4) BS01 rna N/A GO:0000028 ... P68679 40251147
    980554 9ghf:V (2.4) BS01 rna N/A GO:0005515 ... Q8GNY5 40251147
    980555 9ghf:V (2.4) BS02 ZN N/A GO:0005515 ... Q8GNY5 40251147
    980556 9ghf:c (2.4) BS01 rna N/A GO:0000027 ... P60422 40251147
    980557 9ghf:c (2.4) BS02 MG N/A GO:0000027 ... P60422 40251147
    980558 9ghf:d (2.4) BS01 rna N/A GO:0000027 ... P60438 40251147
    980559 9ghf:e (2.4) BS01 rna N/A GO:0001070 ... P60723 40251147
    980560 9ghf:f (2.4) BS01 rna N/A GO:0000027 ... P62399 40251147
    980561 9ghf:f (2.4) BS02 rna N/A GO:0000027 ... P62399 40251147
    980562 9ghf:f (2.4) BS03 rna N/A GO:0000027 ... P62399 40251147
    980563 9ghf:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 40251147
    980564 9ghf:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 40251147
    980565 9ghf:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 40251147
    980566 9ghf:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 40251147
    980567 9ghf:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 40251147
    980568 9ghf:k (2.4) BS01 rna N/A GO:0002181 ... P02413 40251147
    980569 9ghf:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 40251147
    980570 9ghf:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 40251147
    980571 9ghf:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 40251147
    980572 9ghf:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 40251147
    980573 9ghf:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 40251147
    980574 9ghf:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 40251147
    980575 9ghf:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 40251147
    980576 9ghf:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 40251147
    980577 9ghf:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 40251147
    980578 9ghf:r (2.4) BS01 rna N/A GO:0002181 ... P61175 40251147
    980579 9ghf:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 40251147
    980580 9ghf:t (2.4) BS01 rna N/A GO:0000027 ... P60624 40251147
    980581 9ghf:u (2.4) BS01 rna N/A GO:0000027 ... P68919 40251147
    980582 9ghf:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 40251147
    980583 9ghf:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 40251147
    980584 9ghf:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 40251147
    980585 9ghf:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 40251147
    980586 9ghf:y (2.4) BS01 rna N/A GO:0000027 ... P0AG51 40251147
    980587 9ghf:y (2.4) BS02 rna N/A GO:0000027 ... P0AG51 40251147
    980588 9ghf:z (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 40251147
    980589 9ghg:1 (2.22) BS01 rna N/A GO:0003735 ... Q2FZ60 40251147
    980590 9ghg:1 (2.22) BS02 rna N/A GO:0003735 ... Q2FZ60 40251147
    980591 9ghg:2 (2.22) BS01 rna N/A GO:0003735 ... Q2FW14 40251147
    980592 9ghg:3 (2.22) BS01 rna N/A GO:0003735 ... P0A0G2 40251147
    980593 9ghg:3 (2.22) BS02 rna N/A GO:0003735 ... P0A0G2 40251147
    980594 9ghg:4 (2.22) BS01 rna N/A GO:0003735 ... Q2FWD8 40251147
    980595 9ghg:5 (2.22) BS01 rna N/A GO:0003735 ... Q2FZF1 40251147
    980596 9ghg:5 (2.22) BS02 ZN N/A GO:0003735 ... Q2FZF1 40251147
    980597 9ghg:6 (2.22) BS01 rna N/A GO:0003735 ... Q2FYU6 40251147
    980598 9ghg:7 (2.22) BS01 rna N/A GO:0003735 ... Q2FUQ0 40251147
    980599 9ghg:8 (2.22) BS01 rna N/A GO:0003735 ... Q2FXQ0 40251147
    980600 9ghg:9 (2.22) BS01 rna N/A GO:0003735 ... Q2FW29 40251147

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).