SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    980601 9ghg:9 (2.22) BS02 ZN N/A GO:0003735 ... Q2FW29 40251147
    980602 9ghg:C (2.22) BS01 rna N/A GO:0005515 ... Q8GNY5 40251147
    980603 9ghg:C (2.22) BS02 rna N/A GO:0005515 ... Q8GNY5 40251147
    980604 9ghg:C (2.22) BS03 ZN N/A GO:0005515 ... Q8GNY5 40251147
    980605 9ghg:G (2.22) BS01 rna N/A GO:0002181 ... P60430 40251147
    980606 9ghg:G (2.22) BS02 rna N/A GO:0002181 ... P60430 40251147
    980607 9ghg:H (2.22) BS01 rna N/A GO:0003735 ... Q2FW06 40251147
    980608 9ghg:I (2.22) BS01 rna N/A GO:0003735 ... Q2FW07 40251147
    980609 9ghg:J (2.22) BS01 rna N/A GO:0000049 ... Q2FW18 40251147
    980610 9ghg:J (2.22) BS02 rna N/A GO:0000049 ... Q2FW18 40251147
    980611 9ghg:J (2.22) BS03 rna N/A GO:0000049 ... Q2FW18 40251147
    980612 9ghg:K (2.22) BS01 rna N/A GO:0002181 ... Q2FW21 40251147
    980613 9ghg:M (2.22) BS01 rna N/A GO:0003729 ... Q2FW38 40251147
    980614 9ghg:N (2.22) BS01 rna N/A GO:0003735 ... Q2FW16 40251147
    980615 9ghg:N (2.22) BS02 rna N/A GO:0003735 ... Q2FW16 40251147
    980616 9ghg:O (2.22) BS01 rna N/A GO:0003735 ... P0A0F8 40251147
    980617 9ghg:P (2.22) BS01 rna N/A GO:0003735 ... Q2FW13 40251147
    980618 9ghg:P (2.22) BS02 rna N/A GO:0003735 ... Q2FW13 40251147
    980619 9ghg:Q (2.22) BS01 rna N/A GO:0003735 ... Q2FW33 40251147
    980620 9ghg:R (2.22) BS01 rna N/A GO:0003735 ... Q2FW22 40251147
    980621 9ghg:R (2.22) BS02 rna N/A GO:0003735 ... Q2FW22 40251147
    980622 9ghg:S (2.22) BS01 rna N/A GO:0003735 ... Q2FZ42 40251147
    980623 9ghg:S (2.22) BS02 rna N/A GO:0003735 ... Q2FZ42 40251147
    980624 9ghg:T (2.22) BS01 rna N/A GO:0000027 ... Q2FXQ1 40251147
    980625 9ghg:U (2.22) BS01 rna N/A GO:0003723 ... Q2FXS8 40251147
    980626 9ghg:V (2.22) BS01 rna N/A GO:0003735 ... Q2FW11 40251147
    980627 9ghg:W (2.22) BS01 rna N/A GO:0003735 ... Q2FW08 40251147
    980628 9ghg:X (2.22) BS01 rna N/A GO:0003723 ... Q2FW17 40251147
    980629 9ghg:Y (2.22) BS01 rna N/A GO:0003723 ... Q2G0S0 40251147
    980630 9ghg:Z (2.22) BS01 rna N/A GO:0003735 ... Q2FXT0 40251147
    980631 9ghg:Z (2.22) BS02 rna N/A GO:0003735 ... Q2FXT0 40251147
    980632 9ghg:Z (2.22) BS03 rna N/A GO:0003735 ... Q2FXT0 40251147
    980633 9ghg:c (2.22) BS01 rna N/A GO:0003735 ... Q2FZ25 40251147
    980634 9ghg:d (2.22) BS01 rna N/A GO:0003676 ... Q2FW12 40251147
    980635 9ghg:e (2.22) BS01 rna N/A GO:0003723 ... Q2FXK6 40251147
    980636 9ghg:f (2.22) BS01 rna N/A GO:0003723 ... Q2FW23 40251147
    980637 9ghg:g (2.22) BS01 rna N/A GO:0003735 ... Q2G113 40251147
    980638 9ghg:h (2.22) BS01 rna N/A GO:0000049 ... P48940 40251147
    980639 9ghg:h (2.22) BS02 rna N/A GO:0000049 ... P48940 40251147
    980640 9ghg:i (2.22) BS01 rna N/A GO:0003735 ... Q2FW20 40251147
    980641 9ghg:j (2.22) BS01 rna N/A GO:0003723 ... Q2FW39 40251147
    980642 9ghg:j (2.22) BS02 rna N/A GO:0003723 ... Q2FW39 40251147
    980643 9ghg:k (2.22) BS01 rna N/A GO:0000049 ... P66335 40251147
    980644 9ghg:l (2.22) BS01 rna N/A GO:0003735 ... Q2FW31 40251147
    980645 9ghg:m (2.22) BS01 rna N/A GO:0000049 ... P0A0H0 40251147
    980646 9ghg:n (2.22) BS01 rna N/A GO:0000049 ... Q2FW30 40251147
    980647 9ghg:o (2.22) BS01 rna N/A GO:0003735 ... Q2FW19 40251147
    980648 9ghg:o (2.22) BS02 ZN N/A GO:0003735 ... Q2FW19 40251147
    980649 9ghg:p (2.22) BS01 rna N/A GO:0003735 ... Q2G2Q1 40251147
    980650 9ghg:p (2.22) BS02 rna N/A GO:0003735 ... Q2G2Q1 40251147
    980651 9ghg:q (2.22) BS01 rna N/A GO:0003735 ... Q2FZ45 40251147
    980652 9ghg:r (2.22) BS01 rna N/A GO:0003735 ... Q2FW15 40251147
    980653 9ghg:s (2.22) BS01 rna N/A GO:0003735 ... Q2G111 40251147
    980654 9ghg:t (2.22) BS01 rna N/A GO:0003723 ... Q2FW10 40251147
    980655 9ghg:u (2.22) BS01 rna N/A GO:0003723 ... Q2FXY6 40251147
    980656 9ghg:v (2.22) BS01 rna N/A GO:0003735 ... Q2FXZ7 40251147
    980657 9ghh:1 (2.7) BS01 rna N/A GO:0003735 ... Q2FZ60 40251147
    980658 9ghh:1 (2.7) BS02 rna N/A GO:0003735 ... Q2FZ60 40251147
    980659 9ghh:2 (2.7) BS01 rna N/A GO:0003735 ... Q2FW14 40251147
    980660 9ghh:3 (2.7) BS01 rna N/A GO:0003735 ... P0A0G2 40251147
    980661 9ghh:3 (2.7) BS02 rna N/A GO:0003735 ... P0A0G2 40251147
    980662 9ghh:4 (2.7) BS01 rna N/A GO:0003735 ... Q2FWD8 40251147
    980663 9ghh:5 (2.7) BS01 rna N/A GO:0003735 ... Q2FZF1 40251147
    980664 9ghh:5 (2.7) BS02 ZN N/A GO:0003735 ... Q2FZF1 40251147
    980665 9ghh:6 (2.7) BS01 rna N/A GO:0003735 ... Q2FYU6 40251147
    980666 9ghh:7 (2.7) BS01 rna N/A GO:0003735 ... Q2FUQ0 40251147
    980667 9ghh:8 (2.7) BS01 rna N/A GO:0003735 ... Q2FXQ0 40251147
    980668 9ghh:9 (2.7) BS01 rna N/A GO:0003735 ... Q2FW29 40251147
    980669 9ghh:9 (2.7) BS02 ZN N/A GO:0003735 ... Q2FW29 40251147
    980670 9ghh:C (2.7) BS01 rna N/A GO:0005515 ... Q8GNY5 40251147
    980671 9ghh:C (2.7) BS02 rna N/A GO:0005515 ... Q8GNY5 40251147
    980672 9ghh:C (2.7) BS03 ZN N/A GO:0005515 ... Q8GNY5 40251147
    980673 9ghh:G (2.7) BS01 rna N/A GO:0002181 ... P60430 40251147
    980674 9ghh:G (2.7) BS02 rna N/A GO:0002181 ... P60430 40251147
    980675 9ghh:H (2.7) BS01 rna N/A GO:0003735 ... Q2FW06 40251147
    980676 9ghh:I (2.7) BS01 rna N/A GO:0003735 ... Q2FW07 40251147
    980677 9ghh:J (2.7) BS01 rna N/A GO:0000049 ... Q2FW18 40251147
    980678 9ghh:J (2.7) BS02 rna N/A GO:0000049 ... Q2FW18 40251147
    980679 9ghh:J (2.7) BS03 rna N/A GO:0000049 ... Q2FW18 40251147
    980680 9ghh:K (2.7) BS01 rna N/A GO:0002181 ... Q2FW21 40251147
    980681 9ghh:M (2.7) BS01 rna N/A GO:0003729 ... Q2FW38 40251147
    980682 9ghh:N (2.7) BS01 rna N/A GO:0003735 ... Q2FW16 40251147
    980683 9ghh:N (2.7) BS02 rna N/A GO:0003735 ... Q2FW16 40251147
    980684 9ghh:O (2.7) BS01 rna N/A GO:0003735 ... P0A0F8 40251147
    980685 9ghh:P (2.7) BS01 rna N/A GO:0003735 ... Q2FW13 40251147
    980686 9ghh:P (2.7) BS02 rna N/A GO:0003735 ... Q2FW13 40251147
    980687 9ghh:Q (2.7) BS01 rna N/A GO:0003735 ... Q2FW33 40251147
    980688 9ghh:R (2.7) BS01 rna N/A GO:0003735 ... Q2FW22 40251147
    980689 9ghh:R (2.7) BS02 rna N/A GO:0003735 ... Q2FW22 40251147
    980690 9ghh:S (2.7) BS01 rna N/A GO:0003735 ... Q2FZ42 40251147
    980691 9ghh:S (2.7) BS02 rna N/A GO:0003735 ... Q2FZ42 40251147
    980692 9ghh:T (2.7) BS01 rna N/A GO:0000027 ... Q2FXQ1 40251147
    980693 9ghh:U (2.7) BS01 rna N/A GO:0003723 ... Q2FXS8 40251147
    980694 9ghh:V (2.7) BS01 rna N/A GO:0003735 ... Q2FW11 40251147
    980695 9ghh:W (2.7) BS01 rna N/A GO:0003735 ... Q2FW08 40251147
    980696 9ghh:X (2.7) BS01 rna N/A GO:0003723 ... Q2FW17 40251147
    980697 9ghh:Y (2.7) BS01 rna N/A GO:0003723 ... Q2G0S0 40251147
    980698 9ghh:Z (2.7) BS01 rna N/A GO:0003735 ... Q2FXT0 40251147
    980699 9ghh:Z (2.7) BS02 rna N/A GO:0003735 ... Q2FXT0 40251147
    980700 9ghh:c (2.7) BS01 rna N/A GO:0003735 ... Q2FZ25 40251147
    980701 9ghh:d (2.7) BS01 rna N/A GO:0003676 ... Q2FW12 40251147
    980702 9ghh:e (2.7) BS01 rna N/A GO:0003723 ... Q2FXK6 40251147
    980703 9ghh:f (2.7) BS01 rna N/A GO:0003723 ... Q2FW23 40251147
    980704 9ghh:g (2.7) BS01 rna N/A GO:0003735 ... Q2G113 40251147
    980705 9ghh:h (2.7) BS01 rna N/A GO:0000049 ... P48940 40251147
    980706 9ghh:h (2.7) BS02 rna N/A GO:0000049 ... P48940 40251147
    980707 9ghh:i (2.7) BS01 rna N/A GO:0003735 ... Q2FW20 40251147
    980708 9ghh:j (2.7) BS01 rna N/A GO:0003723 ... Q2FW39 40251147
    980709 9ghh:j (2.7) BS02 rna N/A GO:0003723 ... Q2FW39 40251147
    980710 9ghh:k (2.7) BS01 rna N/A GO:0000049 ... P66335 40251147
    980711 9ghh:l (2.7) BS01 rna N/A GO:0003735 ... Q2FW31 40251147
    980712 9ghh:m (2.7) BS01 rna N/A GO:0000049 ... P0A0H0 40251147
    980713 9ghh:n (2.7) BS01 rna N/A GO:0000049 ... Q2FW30 40251147
    980714 9ghh:o (2.7) BS01 rna N/A GO:0003735 ... Q2FW19 40251147
    980715 9ghh:o (2.7) BS02 ZN N/A GO:0003735 ... Q2FW19 40251147
    980716 9ghh:p (2.7) BS01 rna N/A GO:0003735 ... Q2G2Q1 40251147
    980717 9ghh:p (2.7) BS02 rna N/A GO:0003735 ... Q2G2Q1 40251147
    980718 9ghh:q (2.7) BS01 rna N/A GO:0003735 ... Q2FZ45 40251147
    980719 9ghh:r (2.7) BS01 rna N/A GO:0003735 ... Q2FW15 40251147
    980720 9ghh:s (2.7) BS01 rna N/A GO:0003735 ... Q2G111 40251147
    980721 9ghh:t (2.7) BS01 rna N/A GO:0003723 ... Q2FW10 40251147
    980722 9ghh:u (2.7) BS01 rna N/A GO:0003723 ... Q2FXY6 40251147
    980723 9ghh:v (2.7) BS01 rna N/A GO:0003735 ... Q2FXZ7 40251147
    980724 9ghi:L (2.41) BS01 MAN N/A N/A N/A 40511941
    980725 9ghk:A (1.42) BS01 peptide N/A N/A P06241 N/A
    980726 9ghk:B (1.42) BS01 peptide N/A N/A P06241 N/A
    980727 9ghr:A (2.1) BS01 A1ILN N/A N/A P00533 N/A
    980728 9ghs:A (2.6) BS01 A1ILJ N/A N/A P00533 N/A
    980729 9ght:A (2.6) BS01 XA4 N/A N/A P00533 N/A
    980730 9ghu:A (2.25) BS01 A1ILK N/A N/A P00533 N/A
    980731 9ghv:A (2.5) BS01 A1ILI N/A N/A P00533 N/A
    980732 9ghx:A (2.19) BS01 VHL N/A GO:0003796 ... P00698 39382205
    980733 9ghx:A (2.19) BS02 VHL N/A GO:0003796 ... P00698 39382205
    980734 9ghx:A (2.19) BS03 REI N/A GO:0003796 ... P00698 39382205
    980735 9ghy:A (1.15) BS01 A1ILH N/A GO:0000413 ... P62937 39563809
    980736 9ghz:A (3.25) BS01 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980737 9ghz:A (3.25) BS02 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980738 9ghz:A (3.25) BS03 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980739 9ghz:A (3.25) BS04 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980740 9ghz:A (3.25) BS05 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980741 9ghz:A (3.25) BS06 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980742 9ghz:A (3.25) BS07 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980743 9ghz:A (3.25) BS08 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980744 9ghz:A (3.25) BS09 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980745 9ghz:A (3.25) BS10 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980746 9ghz:A (3.25) BS11 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980747 9ghz:A (3.25) BS12 CLR N/A GO:0000297 ... Q5BKX6 40836097
    980748 9gi1:a (3.0) BS01 ADP N/A GO:0005524 ... Q2G0P5 41087538
    980749 9gi1:b (3.0) BS01 peptide N/A GO:0005524 ... Q2G0P5 41087538
    980750 9gi1:b (3.0) BS02 AGS N/A GO:0005524 ... Q2G0P5 41087538
    980751 9gi1:b (3.0) BS03 ADP N/A GO:0005524 ... Q2G0P5 41087538
    980752 9gi1:b (3.0) BS04 MG N/A GO:0005524 ... Q2G0P5 41087538
    980753 9gi1:c (3.0) BS01 peptide N/A GO:0005524 ... Q2G0P5 41087538
    980754 9gi1:c (3.0) BS02 AGS N/A GO:0005524 ... Q2G0P5 41087538
    980755 9gi1:c (3.0) BS03 AGS N/A GO:0005524 ... Q2G0P5 41087538
    980756 9gi1:c (3.0) BS04 MG N/A GO:0005524 ... Q2G0P5 41087538
    980757 9gi1:d (3.0) BS01 peptide N/A GO:0005524 ... Q2G0P5 41087538
    980758 9gi1:d (3.0) BS02 AGS N/A GO:0005524 ... Q2G0P5 41087538
    980759 9gi1:d (3.0) BS03 AGS N/A GO:0005524 ... Q2G0P5 41087538
    980760 9gi1:d (3.0) BS04 MG N/A GO:0005524 ... Q2G0P5 41087538
    980761 9gi1:d (3.0) BS05 MG N/A GO:0005524 ... Q2G0P5 41087538
    980762 9gi1:d (3.0) BS06 ADP N/A GO:0005524 ... Q2G0P5 41087538
    980763 9gi1:e (3.0) BS01 peptide N/A GO:0005524 ... Q2G0P5 41087538
    980764 9gi1:e (3.0) BS02 ADP N/A GO:0005524 ... Q2G0P5 41087538
    980765 9gi1:e (3.0) BS03 AGS N/A GO:0005524 ... Q2G0P5 41087538
    980766 9gi1:e (3.0) BS04 MG N/A GO:0005524 ... Q2G0P5 41087538
    980767 9gi1:e (3.0) BS05 MG N/A GO:0005524 ... Q2G0P5 41087538
    980768 9gi1:f (3.0) BS01 ADP N/A GO:0005524 ... Q2G0P5 41087538
    980769 9gi3:B (3.5) BS01 A1IL5 N/A GO:0016020 ... P9WJV3 39994240
    980770 9gi5:A (2.35) BS01 MN N/A N/A Q8H620 N/A
    980771 9gi5:A (2.35) BS02 AKG N/A N/A Q8H620 N/A
    980772 9gi5:B (2.35) BS01 MN N/A N/A Q8H620 N/A
    980773 9gi5:B (2.35) BS02 AKG N/A N/A Q8H620 N/A
    980774 9gi5:C (2.35) BS01 MN N/A N/A Q8H620 N/A
    980775 9gi5:C (2.35) BS02 AKG N/A N/A Q8H620 N/A
    980776 9gi5:D (2.35) BS01 MN N/A N/A Q8H620 N/A
    980777 9gi5:D (2.35) BS02 AKG N/A N/A Q8H620 N/A
    980778 9gi7:A (1.76) BS01 A1IMF N/A GO:0003796 ... P00698 39792069
    980779 9gi8:A (-1.00) BS01 ZN N/A N/A Q9NUM4 N/A
    980780 9gi8:B (-1.00) BS01 ZN N/A N/A Q9NUM4 N/A
    980781 9gi9:A (3.12) BS01 A1ILZ N/A GO:0004672 ... P00533 40465424
    980782 9gia:A (2.55) BS01 POP N/A GO:0008976 ... Q81F46 N/A
    980783 9gia:B (2.55) BS01 POP N/A GO:0008976 ... Q81F46 N/A
    980784 9gib:A (1.948) BS01 GLU N/A GO:0015276 ... Q00959 39560374
    980785 9gib:B (1.948) BS01 A1ILP N/A GO:0015276 ... Q05586 39560374
    980786 9gic:A (1.823) BS01 A1ILQ N/A GO:0015276 ... Q05586 39560374
    980787 9gid:A (2.0) BS01 A1ILT N/A GO:0015276 ... Q05586 39560374
    980788 9gie:A (2.36) BS01 A1ILS N/A GO:0015276 ... Q05586 39560374
    980789 9gie:B (2.36) BS01 A1ILS N/A GO:0015276 ... Q05586 39560374
    980790 9gif:A (1.9) BS01 A1ILR N/A GO:0015276 ... Q05586 39560374
    980791 9gig:A (2.09) BS01 GLU N/A GO:0015276 ... Q00959 39560374
    980792 9gig:B (2.09) BS01 A1ILO N/A GO:0015276 ... Q05586 39560374
    980793 9gih:A (2.271) BS01 A1IL2 N/A GO:0000702 ... O08760 N/A
    980794 9gij:A (1.476) BS01 A1IL0 N/A GO:0008233 ... P0DTC1 39453309
    980795 9gil:A (1.849) BS01 A1IL7 N/A GO:0008233 ... P0DTC1 39453309
    980796 9gil:B (1.849) BS01 A1IL7 N/A GO:0008233 ... P0DTC1 39453309
    980797 9gin:A (2.06) BS01 A1IL1 N/A GO:0005085 ... Q07890 39818983
    980798 9gio:C (1.486) BS01 3JF N/A N/A P40337 40236540
    980799 9gio:C (1.486) BS02 A1IMD N/A N/A P40337 40236540
    980800 9gip:A (1.463) BS01 A1ILY N/A GO:0042981 ... Q16548 39641779

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).