SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    981001 9gju:A (2.8) BS01 rna N/A GO:0000166 ... Q997F0 40050611
    981002 9gju:A (2.8) BS02 rna N/A GO:0000166 ... Q997F0 40050611
    981003 9gju:A (2.8) BS03 GNP N/A GO:0000166 ... Q997F0 40050611
    981004 9gju:A (2.8) BS04 ZN N/A GO:0000166 ... Q997F0 40050611
    981005 9gju:A (2.8) BS05 ZN N/A GO:0000166 ... Q997F0 40050611
    981006 9gju:A (2.8) BS06 MG N/A GO:0000166 ... Q997F0 40050611
    981007 9gjw:2 (3.3) BS01 ADP N/A GO:0000727 ... P29469 39824870
    981008 9gjw:3 (3.3) BS01 ADP N/A GO:0000727 ... P24279 39824870
    981009 9gjw:3 (3.3) BS02 ADP N/A GO:0000727 ... P24279 39824870
    981010 9gjw:4 (3.3) BS01 dna N/A GO:0000727 ... P30665 39824870
    981011 9gjw:4 (3.3) BS02 ZN N/A GO:0000727 ... P30665 39824870
    981012 9gjw:4 (3.3) BS03 ADP N/A GO:0000727 ... P30665 39824870
    981013 9gjw:5 (3.3) BS01 ADP N/A GO:0000727 ... P29496 39824870
    981014 9gjw:5 (3.3) BS02 ZN N/A GO:0000727 ... P29496 39824870
    981015 9gjw:6 (3.3) BS01 dna N/A GO:0000727 ... P53091 39824870
    981016 9gjw:6 (3.3) BS02 dna N/A GO:0000727 ... P53091 39824870
    981017 9gjw:6 (3.3) BS03 ADP N/A GO:0000727 ... P53091 39824870
    981018 9gjw:6 (3.3) BS04 ADP N/A GO:0000727 ... P53091 39824870
    981019 9gjw:6 (3.3) BS05 ZN N/A GO:0000727 ... P53091 39824870
    981020 9gjw:7 (3.3) BS01 ADP N/A GO:0000727 ... P38132 39824870
    981021 9gjw:7 (3.3) BS02 ZN N/A GO:0000727 ... P38132 39824870
    981022 9gjw:7 (3.3) BS03 ADP N/A GO:0000727 ... P38132 39824870
    981023 9gjw:A (3.3) BS01 ATP N/A GO:0003682 ... P54784 39824870
    981024 9gjw:C (3.3) BS01 dna N/A GO:0003677 ... P54790 39824870
    981025 9gjw:D (3.3) BS01 dna N/A GO:0000808 ... P54791 39824870
    981026 9gjw:D (3.3) BS02 ATP N/A GO:0000808 ... P54791 39824870
    981027 9gjw:E (3.3) BS01 ATP N/A GO:0000808 ... P50874 39824870
    981028 9gjx:A (2.4) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981029 9gjx:A (2.4) BS02 CB1 N/A GO:0005829 ... Q65MG6 N/A
    981030 9gjx:A (2.4) BS03 FMN N/A GO:0005829 ... Q65MG6 N/A
    981031 9gjx:B (2.4) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981032 9gjx:B (2.4) BS02 CB1 N/A GO:0005829 ... Q65MG6 N/A
    981033 9gjx:B (2.4) BS03 CB1 N/A GO:0005829 ... Q65MG6 N/A
    981034 9gjx:B (2.4) BS04 FMN N/A GO:0005829 ... Q65MG6 N/A
    981035 9gjx:C (2.4) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981036 9gjx:C (2.4) BS02 CB1 N/A GO:0005829 ... Q65MG6 N/A
    981037 9gjx:C (2.4) BS03 FMN N/A GO:0005829 ... Q65MG6 N/A
    981038 9gjx:D (2.4) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981039 9gjx:D (2.4) BS02 CB1 N/A GO:0005829 ... Q65MG6 N/A
    981040 9gjx:D (2.4) BS03 CB1 N/A GO:0005829 ... Q65MG6 N/A
    981041 9gjx:D (2.4) BS04 FMN N/A GO:0005829 ... Q65MG6 N/A
    981042 9gjx:E (2.4) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981043 9gjx:E (2.4) BS02 CB1 N/A GO:0005829 ... Q65MG6 N/A
    981044 9gjx:E (2.4) BS03 FMN N/A GO:0005829 ... Q65MG6 N/A
    981045 9gjx:F (2.4) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981046 9gjx:F (2.4) BS02 FMN N/A GO:0005829 ... Q65MG6 N/A
    981047 9gjy:A (1.62) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981048 9gjy:A (1.62) BS02 FMN N/A GO:0005829 ... Q65MG6 N/A
    981049 9gjy:B (1.62) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981050 9gjy:B (1.62) BS02 FMN N/A GO:0005829 ... Q65MG6 N/A
    981051 9gjy:C (1.62) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981052 9gjy:C (1.62) BS02 FMN N/A GO:0005829 ... Q65MG6 N/A
    981053 9gjy:D (1.62) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981054 9gjy:D (1.62) BS02 FMN N/A GO:0005829 ... Q65MG6 N/A
    981055 9gjy:E (1.62) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981056 9gjy:E (1.62) BS02 FMN N/A GO:0005829 ... Q65MG6 N/A
    981057 9gjy:F (1.62) BS01 FMN N/A GO:0005829 ... Q65MG6 N/A
    981058 9gjy:F (1.62) BS02 FMN N/A GO:0005829 ... Q65MG6 N/A
    981059 9gjz:A (1.74) BS01 SAH N/A GO:0004482 ... K0BRZ6 39976734
    981060 9gjz:A (1.74) BS02 AT9 N/A GO:0004482 ... K0BRZ6 39976734
    981061 9gk0:A (0.95) BS01 URA N/A N/A N/A N/A
    981062 9gk0:A (0.95) BS02 URA N/A N/A N/A N/A
    981063 9gk1:A (2.95) BS01 HEM N/A GO:0002933 ... P08684 40209873
    981064 9gk6:A (1.327) BS01 ZN N/A GO:0006508 ... Q9NZ08 39691536
    981065 9gk6:A (1.327) BS02 A1IMM N/A GO:0006508 ... Q9NZ08 39691536
    981066 9gkb:A (2.32) BS01 A1IMO N/A GO:0005216 ... Q9UL62 N/A
    981067 9gkb:A (2.32) BS02 CA N/A GO:0005216 ... Q9UL62 N/A
    981068 9gkb:A (2.32) BS03 Y01 N/A GO:0005216 ... Q9UL62 N/A
    981069 9gkb:A (2.32) BS04 A1IMO N/A GO:0005216 ... Q9UL62 N/A
    981070 9gkb:B (2.32) BS01 A1IMO N/A GO:0005216 ... Q9UL62 N/A
    981071 9gkb:B (2.32) BS02 CA N/A GO:0005216 ... Q9UL62 N/A
    981072 9gkb:B (2.32) BS03 Y01 N/A GO:0005216 ... Q9UL62 N/A
    981073 9gkb:B (2.32) BS04 A1IMO N/A GO:0005216 ... Q9UL62 N/A
    981074 9gkb:C (2.32) BS01 A1IMO N/A GO:0005216 ... Q9UL62 N/A
    981075 9gkb:C (2.32) BS02 CA N/A GO:0005216 ... Q9UL62 N/A
    981076 9gkb:C (2.32) BS03 Y01 N/A GO:0005216 ... Q9UL62 N/A
    981077 9gkb:C (2.32) BS04 A1IMO N/A GO:0005216 ... Q9UL62 N/A
    981078 9gkb:D (2.32) BS01 A1IMO N/A GO:0005216 ... Q9UL62 N/A
    981079 9gkb:D (2.32) BS02 A1IMO N/A GO:0005216 ... Q9UL62 N/A
    981080 9gkb:D (2.32) BS03 CA N/A GO:0005216 ... Q9UL62 N/A
    981081 9gkb:D (2.32) BS04 Y01 N/A GO:0005216 ... Q9UL62 N/A
    981082 9gke:A (1.367) BS01 ZN N/A GO:0006508 ... Q9NZ08 39691536
    981083 9gke:A (1.367) BS02 A1IML N/A GO:0006508 ... Q9NZ08 39691536
    981084 9gkg:A (2.21) BS01 LRX N/A N/A Q13432 39814552
    981085 9gkg:K (2.21) BS01 LRX N/A N/A Q13432 39814552
    981086 9gki:A (3.8) BS01 FO4 N/A GO:0005576 ... P07845 40991702
    981087 9gki:A (3.8) BS02 FO4 N/A GO:0005576 ... P07845 40991702
    981088 9gki:A (3.8) BS03 FO4 N/A GO:0005576 ... P07845 40991702
    981089 9gki:B (3.8) BS01 FO4 N/A GO:0005576 ... P07845 40991702
    981090 9gki:n (3.8) BS01 FO4 N/A GO:0005576 ... P07845 40991702
    981091 9gki:n (3.8) BS02 FO4 N/A GO:0005576 ... P07845 40991702
    981092 9gki:n (3.8) BS03 FO4 N/A GO:0005576 ... P07845 40991702
    981093 9gki:v (3.8) BS01 FO4 N/A GO:0005576 ... P07845 40991702
    981094 9gki:v (3.8) BS02 FO4 N/A GO:0005576 ... P07845 40991702
    981095 9gkk:A (3.04) BS01 XKJ N/A GO:0005886 ... P54582 N/A
    981096 9gkk:C (3.04) BS01 XKJ N/A GO:0005886 ... P54582 N/A
    981097 9gkl:A (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981098 9gkl:A (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981099 9gkl:A (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981100 9gkl:A (2.5) BS04 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981101 9gkl:A (2.5) BS05 CLR N/A GO:0005576 ... B9W5G6 40991702
    981102 9gkl:A (2.5) BS06 CLR N/A GO:0005576 ... B9W5G6 40991702
    981103 9gkl:A (2.5) BS07 CLR N/A GO:0005576 ... B9W5G6 40991702
    981104 9gkl:A (2.5) BS08 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981105 9gkl:A (2.5) BS09 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981106 9gkl:B (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981107 9gkl:B (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981108 9gkl:B (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981109 9gkl:B (2.5) BS04 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981110 9gkl:B (2.5) BS05 CLR N/A GO:0005576 ... B9W5G6 40991702
    981111 9gkl:B (2.5) BS06 CLR N/A GO:0005576 ... B9W5G6 40991702
    981112 9gkl:B (2.5) BS07 CLR N/A GO:0005576 ... B9W5G6 40991702
    981113 9gkl:B (2.5) BS08 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981114 9gkl:B (2.5) BS09 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981115 9gkl:C (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981116 9gkl:C (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981117 9gkl:C (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981118 9gkl:C (2.5) BS04 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981119 9gkl:C (2.5) BS05 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981120 9gkl:C (2.5) BS06 CLR N/A GO:0005576 ... B9W5G6 40991702
    981121 9gkl:C (2.5) BS07 CLR N/A GO:0005576 ... B9W5G6 40991702
    981122 9gkl:C (2.5) BS08 CLR N/A GO:0005576 ... B9W5G6 40991702
    981123 9gkl:C (2.5) BS09 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981124 9gkl:C (2.5) BS10 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981125 9gkl:D (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981126 9gkl:D (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981127 9gkl:D (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981128 9gkl:D (2.5) BS04 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981129 9gkl:D (2.5) BS05 CLR N/A GO:0005576 ... B9W5G6 40991702
    981130 9gkl:D (2.5) BS06 CLR N/A GO:0005576 ... B9W5G6 40991702
    981131 9gkl:D (2.5) BS07 CLR N/A GO:0005576 ... B9W5G6 40991702
    981132 9gkl:D (2.5) BS08 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981133 9gkl:D (2.5) BS09 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981134 9gkl:E (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981135 9gkl:E (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981136 9gkl:E (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981137 9gkl:E (2.5) BS04 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981138 9gkl:E (2.5) BS05 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981139 9gkl:E (2.5) BS06 CLR N/A GO:0005576 ... B9W5G6 40991702
    981140 9gkl:E (2.5) BS07 CLR N/A GO:0005576 ... B9W5G6 40991702
    981141 9gkl:E (2.5) BS08 CLR N/A GO:0005576 ... B9W5G6 40991702
    981142 9gkl:E (2.5) BS09 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981143 9gkl:E (2.5) BS10 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981144 9gkl:F (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981145 9gkl:F (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981146 9gkl:F (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981147 9gkl:F (2.5) BS04 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981148 9gkl:F (2.5) BS05 CLR N/A GO:0005576 ... B9W5G6 40991702
    981149 9gkl:F (2.5) BS06 CLR N/A GO:0005576 ... B9W5G6 40991702
    981150 9gkl:F (2.5) BS07 CLR N/A GO:0005576 ... B9W5G6 40991702
    981151 9gkl:F (2.5) BS08 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981152 9gkl:F (2.5) BS09 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981153 9gkl:G (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981154 9gkl:G (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981155 9gkl:G (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981156 9gkl:G (2.5) BS04 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981157 9gkl:G (2.5) BS05 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981158 9gkl:G (2.5) BS06 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981159 9gkl:G (2.5) BS07 CLR N/A GO:0005576 ... B9W5G6 40991702
    981160 9gkl:G (2.5) BS08 CLR N/A GO:0005576 ... B9W5G6 40991702
    981161 9gkl:G (2.5) BS09 CLR N/A GO:0005576 ... B9W5G6 40991702
    981162 9gkl:G (2.5) BS10 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981163 9gkl:U (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981164 9gkl:U (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981165 9gkl:U (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981166 9gkl:U (2.5) BS04 CLR N/A GO:0005576 ... B9W5G6 40991702
    981167 9gkl:U (2.5) BS05 CLR N/A GO:0005576 ... B9W5G6 40991702
    981168 9gkl:U (2.5) BS06 CLR N/A GO:0005576 ... B9W5G6 40991702
    981169 9gkl:U (2.5) BS07 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981170 9gkl:U (2.5) BS08 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981171 9gkl:U (2.5) BS09 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981172 9gkm:A (3.69) BS01 SY8 N/A GO:0004842 ... Q14669 40419785
    981173 9gko:A (4.9) BS01 FO4 N/A GO:0005576 ... P07845 40991702
    981174 9gko:A (4.9) BS02 FO4 N/A GO:0005576 ... P07845 40991702
    981175 9gko:A (4.9) BS03 FO4 N/A GO:0005576 ... P07845 40991702
    981176 9gko:D (4.9) BS01 FO4 N/A GO:0005576 ... P07845 40991702
    981177 9gko:D (4.9) BS02 FO4 N/A GO:0005576 ... P07845 40991702
    981178 9gko:D (4.9) BS03 FO4 N/A GO:0005576 ... P07845 40991702
    981179 9gko:n (4.9) BS01 FO4 N/A GO:0005576 ... P07845 40991702
    981180 9gko:n (4.9) BS02 FO4 N/A GO:0005576 ... P07845 40991702
    981181 9gkp:A (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981182 9gkp:A (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981183 9gkp:A (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981184 9gkp:A (2.5) BS04 CLR N/A GO:0005576 ... B9W5G6 40991702
    981185 9gkp:A (2.5) BS05 CLR N/A GO:0005576 ... B9W5G6 40991702
    981186 9gkp:A (2.5) BS06 CLR N/A GO:0005576 ... B9W5G6 40991702
    981187 9gkp:A (2.5) BS07 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981188 9gkp:A (2.5) BS08 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981189 9gkp:B (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981190 9gkp:B (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981191 9gkp:B (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981192 9gkp:B (2.5) BS04 CLR N/A GO:0005576 ... B9W5G6 40991702
    981193 9gkp:B (2.5) BS05 CLR N/A GO:0005576 ... B9W5G6 40991702
    981194 9gkp:B (2.5) BS06 CLR N/A GO:0005576 ... B9W5G6 40991702
    981195 9gkp:B (2.5) BS07 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981196 9gkp:B (2.5) BS08 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981197 9gkp:C (2.5) BS01 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981198 9gkp:C (2.5) BS02 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981199 9gkp:C (2.5) BS03 FO4 N/A GO:0005576 ... B9W5G6 40991702
    981200 9gkp:C (2.5) BS04 CLR N/A GO:0005576 ... B9W5G6 40991702

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).