SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    981401 9gm5:D (3.7) BS02 ATP N/A GO:0000808 ... P54791 39824870
    981402 9gm5:E (3.7) BS01 dna N/A GO:0000808 ... P50874 39824870
    981403 9gm5:E (3.7) BS02 ATP N/A GO:0000808 ... P50874 39824870
    981404 9gm6:A (3.7) BS01 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981405 9gm6:A (3.7) BS02 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981406 9gm6:B (3.7) BS01 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981407 9gm6:B (3.7) BS02 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981408 9gm7:A (4.3) BS01 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981409 9gm7:A (4.3) BS02 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981410 9gm7:B (4.3) BS01 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981411 9gm7:B (4.3) BS02 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981412 9gm8:A (3.9) BS01 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981413 9gm8:A (3.9) BS02 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981414 9gm8:B (3.9) BS01 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981415 9gm8:B (3.9) BS02 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981416 9gm9:A (7.8) BS01 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981417 9gm9:A (7.8) BS02 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981418 9gm9:B (7.8) BS01 dna N/A GO:0003677 ... A0A0F7LRY2 40168993
    981419 9gm9:B (7.8) BS02 dna N/A GO:0003677 ... A0A0F7LRY2 40168993
    981420 9gm9:B (7.8) BS03 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981421 9gm9:B (7.8) BS04 ATP N/A GO:0003677 ... A0A0F7LRY2 40168993
    981422 9gm9:C (7.8) BS01 dna N/A GO:0005509 ... A0A0F7LMQ4 40168993
    981423 9gm9:D (7.8) BS01 dna N/A GO:0005509 ... A0A0F7LMQ4 40168993
    981424 9gm9:E (7.8) BS01 dna N/A GO:0005737 ... A0A0F7LPV6 40168993
    981425 9gm9:F (7.8) BS01 dna N/A GO:0005737 ... A0A0F7LPV6 40168993
    981426 9gm9:Q (7.8) BS01 dna N/A GO:0005737 ... A0A0F7LPV6 40168993
    981427 9gm9:Q (7.8) BS02 dna N/A GO:0005737 ... A0A0F7LPV6 40168993
    981428 9gma:A (9.1) BS01 ATP N/A GO:0003677 ... Q7N6B7 40168993
    981429 9gma:A (9.1) BS02 ATP N/A GO:0003677 ... Q7N6B7 40168993
    981430 9gma:B (9.1) BS01 dna N/A GO:0003677 ... Q7N6B7 40168993
    981431 9gma:B (9.1) BS02 dna N/A GO:0003677 ... Q7N6B7 40168993
    981432 9gma:B (9.1) BS03 ATP N/A GO:0003677 ... Q7N6B7 40168993
    981433 9gma:B (9.1) BS04 ATP N/A GO:0003677 ... Q7N6B7 40168993
    981434 9gma:C (9.1) BS01 dna N/A GO:0005509 ... Q7N6B9 40168993
    981435 9gma:D (9.1) BS01 dna N/A GO:0005509 ... Q7N6B9 40168993
    981436 9gma:D (9.1) BS02 dna N/A GO:0005509 ... Q7N6B9 40168993
    981437 9gma:E (9.1) BS01 dna N/A GO:0005737 ... Q7N6B8 40168993
    981438 9gma:F (9.1) BS01 dna N/A GO:0005737 ... Q7N6B8 40168993
    981439 9gma:O (9.1) BS01 ATP N/A GO:0003677 ... Q7N6B7 40168993
    981440 9gma:O (9.1) BS02 ATP N/A GO:0003677 ... Q7N6B7 40168993
    981441 9gma:P (9.1) BS01 dna N/A GO:0003677 ... Q7N6B7 40168993
    981442 9gma:P (9.1) BS02 dna N/A GO:0003677 ... Q7N6B7 40168993
    981443 9gma:P (9.1) BS03 ATP N/A GO:0003677 ... Q7N6B7 40168993
    981444 9gma:P (9.1) BS04 ATP N/A GO:0003677 ... Q7N6B7 40168993
    981445 9gma:Q (9.1) BS01 dna N/A GO:0005737 ... Q7N6B8 40168993
    981446 9gma:Q (9.1) BS02 dna N/A GO:0005737 ... Q7N6B8 40168993
    981447 9gma:R (9.1) BS01 dna N/A GO:0005737 ... Q7N6B8 40168993
    981448 9gmc:A (1.77) BS01 SF4 N/A GO:0003824 ... A0A2T1C2J1 40354606
    981449 9gmc:A (1.77) BS02 SF4 N/A GO:0003824 ... A0A2T1C2J1 40354606
    981450 9gmc:A (1.77) BS03 SAH N/A GO:0003824 ... A0A2T1C2J1 40354606
    981451 9gmc:C (1.77) BS01 SF4 N/A GO:0003824 ... A0A2T1C2J1 40354606
    981452 9gmc:C (1.77) BS02 SF4 N/A GO:0003824 ... A0A2T1C2J1 40354606
    981453 9gmc:C (1.77) BS03 SAH N/A GO:0003824 ... A0A2T1C2J1 40354606
    981454 9gmk:A (3.5) BS01 dna N/A GO:0000786 ... Q71DI3 39900593
    981455 9gmk:A (3.5) BS02 dna N/A GO:0000786 ... Q71DI3 39900593
    981456 9gmk:B (3.5) BS01 dna N/A GO:0000781 ... P62805 39900593
    981457 9gmk:B (3.5) BS02 dna N/A GO:0000781 ... P62805 39900593
    981458 9gmk:C (3.5) BS01 dna N/A GO:0000786 ... Q6FI13 39900593
    981459 9gmk:C (3.5) BS02 dna N/A GO:0000786 ... Q6FI13 39900593
    981460 9gmk:D (3.5) BS01 dna N/A GO:0000786 ... P06899 39900593
    981461 9gmk:D (3.5) BS02 dna N/A GO:0000786 ... P06899 39900593
    981462 9gmk:E (3.5) BS01 dna N/A GO:0000786 ... Q71DI3 39900593
    981463 9gmk:E (3.5) BS02 dna N/A GO:0000786 ... Q71DI3 39900593
    981464 9gmk:F (3.5) BS01 dna N/A GO:0000781 ... P62805 39900593
    981465 9gmk:F (3.5) BS02 dna N/A GO:0000781 ... P62805 39900593
    981466 9gmk:G (3.5) BS01 dna N/A GO:0000786 ... Q6FI13 39900593
    981467 9gmk:G (3.5) BS02 dna N/A GO:0000786 ... Q6FI13 39900593
    981468 9gmk:H (3.5) BS01 dna N/A GO:0000786 ... P06899 39900593
    981469 9gmk:H (3.5) BS02 dna N/A GO:0000786 ... P06899 39900593
    981470 9gml:C (3.12) BS01 NI N/A GO:0005737 ... P41020 39571870
    981471 9gml:C (3.12) BS02 NI N/A GO:0005737 ... P41020 39571870
    981472 9gmo:0 (2.59) BS01 rna N/A GO:0003676 ... Q969S3 38746087
    981473 9gmo:D (2.59) BS01 rna N/A GO:0002181 ... P62917 38746087
    981474 9gmo:E (2.59) BS01 rna N/A GO:0002181 ... P39023 38746087
    981475 9gmo:F (2.59) BS01 rna N/A GO:0002181 ... P36578 38746087
    981476 9gmo:F (2.59) BS02 rna N/A GO:0002181 ... P36578 38746087
    981477 9gmo:G (2.59) BS01 rna N/A GO:0000027 ... P46777 38746087
    981478 9gmo:G (2.59) BS02 rna N/A GO:0000027 ... P46777 38746087
    981479 9gmo:G (2.59) BS03 GTP N/A GO:0000027 ... P46777 38746087
    981480 9gmo:H (2.59) BS01 rna N/A GO:0002181 ... Q02878 38746087
    981481 9gmo:I (2.59) BS01 rna N/A GO:0002181 ... P40429 38746087
    981482 9gmo:J (2.59) BS01 rna N/A GO:0002181 ... P18621 38746087
    981483 9gmo:J (2.59) BS02 rna N/A GO:0002181 ... P18621 38746087
    981484 9gmo:K (2.59) BS01 rna N/A GO:0002181 ... Q07020 38746087
    981485 9gmo:L (2.59) BS01 rna N/A GO:0002181 ... P84098 38746087
    981486 9gmo:M (2.59) BS01 rna N/A GO:0002181 ... Q02543 38746087
    981487 9gmo:M (2.59) BS02 rna N/A GO:0002181 ... Q02543 38746087
    981488 9gmo:N (2.59) BS01 rna N/A GO:0001650 ... P46778 38746087
    981489 9gmo:N (2.59) BS02 rna N/A GO:0001650 ... P46778 38746087
    981490 9gmo:O (2.59) BS01 rna N/A GO:0002181 ... P35268 38746087
    981491 9gmo:P (2.59) BS01 rna N/A GO:0000122 ... P62829 38746087
    981492 9gmo:Q (2.59) BS01 rna N/A GO:0002181 ... P83731 38746087
    981493 9gmo:R (2.59) BS01 rna N/A GO:0002181 ... P62750 38746087
    981494 9gmo:R (2.59) BS02 rna N/A GO:0002181 ... P62750 38746087
    981495 9gmo:S (2.59) BS01 rna N/A GO:0002181 ... P61254 38746087
    981496 9gmo:S (2.59) BS02 rna N/A GO:0002181 ... P61254 38746087
    981497 9gmo:T (2.59) BS01 rna N/A GO:0002181 ... P61353 38746087
    981498 9gmo:U (2.59) BS01 rna N/A GO:0002181 ... P46776 38746087
    981499 9gmo:V (2.59) BS01 rna N/A GO:0002181 ... P47914 38746087
    981500 9gmo:W (2.59) BS01 rna N/A GO:0002181 ... P62888 38746087
    981501 9gmo:X (2.59) BS01 rna N/A GO:0002181 ... P62899 38746087
    981502 9gmo:Y (2.59) BS01 rna N/A GO:0002181 ... P62910 38746087
    981503 9gmo:Z (2.59) BS01 rna N/A GO:0002181 ... P18077 38746087
    981504 9gmo:a (2.59) BS01 rna N/A GO:0002181 ... P49207 38746087
    981505 9gmo:a (2.59) BS02 ZN N/A GO:0002181 ... P49207 38746087
    981506 9gmo:b (2.59) BS01 rna N/A GO:0000463 ... P42766 38746087
    981507 9gmo:b (2.59) BS02 rna N/A GO:0000463 ... P42766 38746087
    981508 9gmo:c (2.59) BS01 rna N/A GO:0002181 ... Q9Y3U8 38746087
    981509 9gmo:d (2.59) BS01 rna N/A GO:0000448 ... P61927 38746087
    981510 9gmo:d (2.59) BS02 rna N/A GO:0000448 ... P61927 38746087
    981511 9gmo:d (2.59) BS03 ZN N/A GO:0000448 ... P61927 38746087
    981512 9gmo:e (2.59) BS01 rna N/A GO:0002181 ... P63173 38746087
    981513 9gmo:f (2.59) BS01 rna N/A GO:0002181 ... P62891 38746087
    981514 9gmo:f (2.59) BS02 rna N/A GO:0002181 ... P62891 38746087
    981515 9gmo:g (2.59) BS01 rna N/A GO:0002181 ... P62987 38746087
    981516 9gmo:g (2.59) BS02 ZN N/A GO:0002181 ... P62987 38746087
    981517 9gmo:h (2.59) BS01 rna N/A GO:0000054 ... P56537 38746087
    981518 9gmo:i (2.59) BS01 rna N/A GO:0002181 ... P83881 38746087
    981519 9gmo:i (2.59) BS02 ZN N/A GO:0002181 ... P83881 38746087
    981520 9gmo:j (2.59) BS01 rna N/A GO:0002181 ... P61513 38746087
    981521 9gmo:j (2.59) BS02 ZN N/A GO:0002181 ... P61513 38746087
    981522 9gmo:k (2.59) BS01 rna N/A GO:0002181 ... P46779 38746087
    981523 9gmo:l (2.59) BS01 rna N/A GO:0002181 ... P61313 38746087
    981524 9gmo:l (2.59) BS02 rna N/A GO:0002181 ... P61313 38746087
    981525 9gmo:m (2.59) BS01 rna N/A GO:0000463 ... P18124 38746087
    981526 9gmo:m (2.59) BS02 rna N/A GO:0000463 ... P18124 38746087
    981527 9gmo:n (2.59) BS01 rna N/A GO:0000470 ... P62424 38746087
    981528 9gmo:n (2.59) BS02 rna N/A GO:0000470 ... P62424 38746087
    981529 9gmo:o (2.59) BS01 rna N/A GO:0002181 ... P32969 38746087
    981530 9gmo:p (2.59) BS01 rna N/A GO:0000122 ... P27635 38746087
    981531 9gmo:p (2.59) BS02 rna N/A GO:0000122 ... P27635 38746087
    981532 9gmo:q (2.59) BS01 rna N/A GO:0000027 ... P62913 38746087
    981533 9gmo:q (2.59) BS02 rna N/A GO:0000027 ... P62913 38746087
    981534 9gmo:r (2.59) BS01 rna N/A GO:0002181 ... P26373 38746087
    981535 9gmo:r (2.59) BS02 rna N/A GO:0002181 ... P26373 38746087
    981536 9gmo:s (2.59) BS01 rna N/A GO:0002181 ... P50914 38746087
    981537 9gmq:A (2.19) BS01 MXU N/A GO:0008233 ... P0DTC1 39817813
    981538 9gmq:B (2.19) BS01 MXU N/A GO:0008233 ... P0DTC1 39817813
    981539 9gmr:A (2.8) BS01 dna N/A GO:0000786 ... Q71DI3 39900593
    981540 9gmr:A (2.8) BS02 dna N/A GO:0000786 ... Q71DI3 39900593
    981541 9gmr:B (2.8) BS01 dna N/A GO:0000781 ... P62805 39900593
    981542 9gmr:B (2.8) BS02 dna N/A GO:0000781 ... P62805 39900593
    981543 9gmr:C (2.8) BS01 dna N/A GO:0000786 ... Q6FI13 39900593
    981544 9gmr:C (2.8) BS02 dna N/A GO:0000786 ... Q6FI13 39900593
    981545 9gmr:D (2.8) BS01 dna N/A GO:0000786 ... P06899 39900593
    981546 9gmr:D (2.8) BS02 dna N/A GO:0000786 ... P06899 39900593
    981547 9gmr:E (2.8) BS01 dna N/A GO:0000786 ... Q71DI3 39900593
    981548 9gmr:E (2.8) BS02 dna N/A GO:0000786 ... Q71DI3 39900593
    981549 9gmr:F (2.8) BS01 dna N/A GO:0000781 ... P62805 39900593
    981550 9gmr:F (2.8) BS02 dna N/A GO:0000781 ... P62805 39900593
    981551 9gmr:G (2.8) BS01 dna N/A GO:0000786 ... Q6FI13 39900593
    981552 9gmr:G (2.8) BS02 dna N/A GO:0000786 ... Q6FI13 39900593
    981553 9gmr:H (2.8) BS01 dna N/A GO:0000786 ... P06899 39900593
    981554 9gmr:H (2.8) BS02 dna N/A GO:0000786 ... P06899 39900593
    981555 9gmr:K (2.8) BS01 dna N/A GO:0000122 ... Q9NRC8 39900593
    981556 9gmr:K (2.8) BS02 dna N/A GO:0000122 ... Q9NRC8 39900593
    981557 9gmr:K (2.8) BS03 A1IY0 N/A GO:0000122 ... Q9NRC8 39900593
    981558 9gmr:K (2.8) BS04 ZN N/A GO:0000122 ... Q9NRC8 39900593
    981559 9gms:A (1.98) BS01 rna N/A GO:0003723 ... P9WI57 40530695
    981560 9gms:A (1.98) BS02 A1IM2 N/A GO:0003723 ... P9WI57 40530695
    981561 9gms:B (1.98) BS01 rna N/A GO:0003723 ... P9WI57 40530695
    981562 9gms:B (1.98) BS02 A1IM2 N/A GO:0003723 ... P9WI57 40530695
    981563 9gms:C (1.98) BS01 rna N/A GO:0003723 ... P9WI57 40530695
    981564 9gms:C (1.98) BS02 A1IM2 N/A GO:0003723 ... P9WI57 40530695
    981565 9gmt:A (1.93) BS01 rna N/A GO:0003723 ... P9WI57 40530695
    981566 9gmt:A (1.93) BS02 A1IM2 N/A GO:0003723 ... P9WI57 40530695
    981567 9gmt:B (1.93) BS01 rna N/A GO:0003723 ... P9WI57 40530695
    981568 9gmt:B (1.93) BS02 A1IM2 N/A GO:0003723 ... P9WI57 40530695
    981569 9gmt:C (1.93) BS01 rna N/A GO:0003723 ... P9WI57 40530695
    981570 9gmt:C (1.93) BS02 A1IM2 N/A GO:0003723 ... P9WI57 40530695
    981571 9gmu:A (3.8) BS01 MG N/A N/A P11215 N/A
    981572 9gmu:B (3.8) BS01 MG N/A N/A P11215 N/A
    981573 9gmw:A (3.0) BS01 rna N/A GO:0000049 ... Q7Z7L1 39627193
    981574 9gmw:A (3.0) BS02 ZN N/A GO:0000049 ... Q7Z7L1 39627193
    981575 9gmw:A (3.0) BS03 MN N/A GO:0000049 ... Q7Z7L1 39627193
    981576 9gmw:B (3.0) BS01 rna N/A GO:0000049 ... Q7Z7L1 39627193
    981577 9gmw:B (3.0) BS02 ZN N/A GO:0000049 ... Q7Z7L1 39627193
    981578 9gmw:B (3.0) BS03 MN N/A GO:0000049 ... Q7Z7L1 39627193
    981579 9gmw:B (3.0) BS04 MN N/A GO:0000049 ... Q7Z7L1 39627193
    981580 9gmx:A (2.82) BS01 rna N/A GO:0000049 ... Q7Z7L1 39627193
    981581 9gmx:A (2.82) BS02 ZN N/A GO:0000049 ... Q7Z7L1 39627193
    981582 9gmx:A (2.82) BS03 MN N/A GO:0000049 ... Q7Z7L1 39627193
    981583 9gmx:B (2.82) BS01 ZN N/A GO:0000049 ... Q7Z7L1 39627193
    981584 9gmx:B (2.82) BS02 MN N/A GO:0000049 ... Q7Z7L1 39627193
    981585 9gmy:A (1.97) BS01 GTP N/A GO:0000226 ... P81947 N/A
    981586 9gmy:A (1.97) BS02 CA N/A GO:0000226 ... P81947 N/A
    981587 9gmy:B (1.97) BS01 GDP N/A GO:0000226 ... Q6B856 N/A
    981588 9gmy:B (1.97) BS02 CA N/A GO:0000226 ... Q6B856 N/A
    981589 9gmy:B (1.97) BS03 A1IM9 N/A GO:0000226 ... Q6B856 N/A
    981590 9gmy:C (1.97) BS01 GTP N/A GO:0000226 ... P81947 N/A
    981591 9gmy:C (1.97) BS02 CA N/A GO:0000226 ... P81947 N/A
    981592 9gmy:D (1.97) BS01 GDP N/A GO:0000226 ... Q6B856 N/A
    981593 9gmy:D (1.97) BS02 A1IM9 N/A GO:0000226 ... Q6B856 N/A
    981594 9gmy:F (1.97) BS01 ACP N/A GO:0000226 ... A0A8V0Z8P0 N/A
    981595 9gmy:F (1.97) BS02 MG N/A GO:0000226 ... A0A8V0Z8P0 N/A
    981596 9gmz:A (3.2) BS01 peptide N/A GO:0016887 ... A0ACD6BA40 40103227
    981597 9gmz:A (3.2) BS02 ANP N/A GO:0016887 ... A0ACD6BA40 40103227
    981598 9gmz:B (3.2) BS01 peptide N/A GO:0016887 ... A0ACD6BA40 40103227
    981599 9gmz:B (3.2) BS02 ANP N/A GO:0016887 ... A0ACD6BA40 40103227
    981600 9gmz:B (3.2) BS03 ANP N/A GO:0016887 ... A0ACD6BA40 40103227

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).