SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    981801 9gp1:A (2.21) BS01 ZN N/A N/A O75164 N/A
    981802 9gp1:B (2.21) BS01 ZN N/A N/A O75164 N/A
    981803 9gp1:C (2.21) BS01 ZN N/A N/A O75164 N/A
    981804 9gp1:D (2.21) BS01 ZN N/A N/A O75164 N/A
    981805 9gp3:A (2.45) BS01 A1IOP N/A GO:0000082 ... P24941 40899577
    981806 9gp7:A (3.35) BS01 A1INJ N/A GO:0001614 ... Q99571 N/A
    981807 9gp7:B (3.35) BS01 A1INJ N/A GO:0001614 ... Q99571 N/A
    981808 9gp7:C (3.35) BS01 A1INJ N/A GO:0001614 ... Q99571 N/A
    981809 9gp9:A (2.88) BS01 ADP N/A GO:0008976 ... A0A1E4R1F9 39846220
    981810 9gp9:A (2.88) BS02 PO4 N/A GO:0008976 ... A0A1E4R1F9 39846220
    981811 9gp9:A (2.88) BS03 PO4 N/A GO:0008976 ... A0A1E4R1F9 39846220
    981812 9gp9:B (2.88) BS01 ADP N/A GO:0008976 ... A0A1E4R1F9 39846220
    981813 9gp9:B (2.88) BS02 PO4 N/A GO:0008976 ... A0A1E4R1F9 39846220
    981814 9gpb:A (2.9) BS01 PLP 2.4.1.1 GO:0004645 ... P00489 2770867
    981815 9gpb:B (2.9) BS01 PLP 2.4.1.1 GO:0004645 ... P00489 2770867
    981816 9gpb:C (2.9) BS01 PLP 2.4.1.1 GO:0004645 ... P00489 2770867
    981817 9gpb:D (2.9) BS01 PLP 2.4.1.1 GO:0004645 ... P00489 2770867
    981818 9gpd:A (1.35) BS01 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981819 9gpd:A (1.35) BS02 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981820 9gpd:A (1.35) BS03 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981821 9gpe:A (1.62) BS01 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981822 9gpe:A (1.62) BS02 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981823 9gpe:A (1.62) BS03 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981824 9gpe:A (1.62) BS04 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981825 9gpf:A (1.6) BS01 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981826 9gpf:A (1.6) BS02 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981827 9gpf:A (1.6) BS03 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981828 9gpf:A (1.6) BS04 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981829 9gpf:A (1.6) BS05 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981830 9gpg:A (1.7) BS01 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981831 9gpg:A (1.7) BS02 BMA N/A GO:0004553 ... A0A7C3MIF0 N/A
    981832 9gph:A (1.7) BS01 MAN N/A GO:0009298 ... B0K2C2 N/A
    981833 9gph:B (1.7) BS01 MAN N/A GO:0009298 ... B0K2C2 N/A
    981834 9gph:C (1.7) BS01 MAN N/A GO:0009298 ... B0K2C2 N/A
    981835 9gph:D (1.7) BS01 MAN N/A GO:0009298 ... B0K2C2 N/A
    981836 9gpj:A (1.53) BS01 dna N/A GO:0003676 ... P09651 N/A
    981837 9gpk:A (1.75) BS01 A1INK N/A GO:0003755 ... Q13451 39749563
    981838 9gpk:B (1.75) BS01 A1INK N/A GO:0003755 ... Q13451 39749563
    981839 9gpl:A (1.8) BS01 A1INL N/A GO:0003755 ... Q13451 39749563
    981840 9gpl:B (1.8) BS01 A1INL N/A GO:0003755 ... Q13451 39749563
    981841 9gpm:A (1.55) BS01 A1INM N/A GO:0003755 ... Q13451 39749563
    981842 9gpm:B (1.55) BS01 A1INM N/A GO:0003755 ... Q13451 39749563
    981843 9gpn:A (1.8) BS01 A1INN N/A GO:0003755 ... Q13451 39749563
    981844 9gpn:B (1.8) BS01 A1INN N/A GO:0003755 ... Q13451 39749563
    981845 9gpo:A (1.68) BS01 A1INU N/A GO:0003755 ... Q13451 39749563
    981846 9gpo:B (1.68) BS01 A1INU N/A GO:0003755 ... Q13451 39749563
    981847 9gpp:A (2.1) BS01 A1INO N/A GO:0003755 ... Q13451 39749563
    981848 9gpp:B (2.1) BS01 A1INO N/A GO:0003755 ... Q13451 39749563
    981849 9gpq:A (1.35) BS01 A1INQ N/A GO:0003755 ... Q13451 39749563
    981850 9gpq:B (1.35) BS01 A1INQ N/A GO:0003755 ... Q13451 39749563
    981851 9gpr:A (1.75) BS01 A1INP N/A GO:0003755 ... Q13451 39749563
    981852 9gpr:B (1.75) BS01 A1INP N/A GO:0003755 ... Q13451 39749563
    981853 9gps:A (1.9) BS01 A1INV N/A GO:0003755 ... Q13451 39749563
    981854 9gps:B (1.9) BS01 A1INV N/A GO:0003755 ... Q13451 39749563
    981855 9gpt:A (2.0) BS01 A1INR N/A GO:0003755 ... Q13451 39749563
    981856 9gpt:B (2.0) BS01 A1INR N/A GO:0003755 ... Q13451 39749563
    981857 9gpu:A (1.36) BS01 A1INS N/A GO:0003755 ... Q13451 39749563
    981858 9gpu:B (1.36) BS01 A1INS N/A GO:0003755 ... Q13451 39749563
    981859 9gpv:A (1.7) BS01 A1INT N/A GO:0003755 ... Q13451 39749563
    981860 9gpv:B (1.7) BS01 A1INT N/A GO:0003755 ... Q13451 39749563
    981861 9gpw:A (1.74) BS01 A1INW N/A GO:0003755 ... Q13451 39749563
    981862 9gpw:B (1.74) BS01 A1INW N/A GO:0003755 ... Q13451 39749563
    981863 9gpx:A (1.8) BS01 A1INX N/A GO:0003755 ... Q13451 39749563
    981864 9gpx:B (1.8) BS01 A1INX N/A GO:0003755 ... Q13451 39749563
    981865 9gpy:A (1.5) BS01 A1INZ N/A GO:0003755 ... Q13451 39749563
    981866 9gpy:B (1.5) BS01 A1INZ N/A GO:0003755 ... Q13451 39749563
    981867 9gpy:C (1.5) BS01 A1INZ N/A GO:0003755 ... Q13451 39749563
    981868 9gpz:A (1.8) BS01 A1INY N/A GO:0003755 ... Q13451 39749563
    981869 9gpz:B (1.8) BS01 A1INY N/A GO:0003755 ... Q13451 39749563
    981870 9gq0:A (1.04) BS01 FUL N/A N/A P10153 N/A
    981871 9gq0:A (1.04) BS02 FUC N/A N/A P10153 N/A
    981872 9gq0:A (1.04) BS03 FUL N/A N/A P10153 N/A
    981873 9gq0:A (1.04) BS04 FUL N/A N/A P10153 N/A
    981874 9gq1:A (1.9) BS01 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981875 9gq1:A (1.9) BS02 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981876 9gq1:A (1.9) BS03 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981877 9gq1:A (1.9) BS04 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981878 9gq1:A (1.9) BS05 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981879 9gq1:A (1.9) BS06 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981880 9gq1:A (1.9) BS07 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981881 9gq1:A (1.9) BS08 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981882 9gq1:A (1.9) BS09 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981883 9gq1:A (1.9) BS10 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981884 9gq1:A (1.9) BS11 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981885 9gq1:B (1.9) BS01 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981886 9gq1:B (1.9) BS02 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981887 9gq1:B (1.9) BS03 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981888 9gq1:B (1.9) BS04 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981889 9gq1:B (1.9) BS05 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981890 9gq1:B (1.9) BS06 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981891 9gq1:B (1.9) BS07 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981892 9gq1:B (1.9) BS08 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981893 9gq1:B (1.9) BS09 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981894 9gq1:B (1.9) BS10 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981895 9gq1:B (1.9) BS11 CU1 N/A GO:0042802 ... A0A2D2D105 N/A
    981896 9gq2:A (2.301) BS01 A1IN0 N/A GO:0003755 ... Q13451 39752587
    981897 9gq2:B (2.301) BS01 A1IN0 N/A GO:0003755 ... Q13451 39752587
    981898 9gq3:A (2.3) BS01 A1IN1 N/A GO:0003755 ... Q13451 39752587
    981899 9gq3:B (2.3) BS01 A1IN1 N/A GO:0003755 ... Q13451 39752587
    981900 9gq4:A (1.8) BS01 A1IN2 N/A GO:0003755 ... Q13451 39752587
    981901 9gq4:B (1.8) BS01 A1IN2 N/A GO:0003755 ... Q13451 39752587
    981902 9gq5:A (1.93) BS01 A1IN3 N/A GO:0003755 ... Q13451 39752587
    981903 9gq5:B (1.93) BS01 A1IN3 N/A GO:0003755 ... Q13451 39752587
    981904 9gq6:A (1.88) BS01 A1IN4 N/A GO:0003755 ... Q13451 39752587
    981905 9gq6:B (1.88) BS01 A1IN4 N/A GO:0003755 ... Q13451 39752587
    981906 9gq7:A (2.3) BS01 A1IN5 N/A GO:0003755 ... Q13451 39752587
    981907 9gq7:B (2.3) BS01 A1IN5 N/A GO:0003755 ... Q13451 39752587
    981908 9gq8:A (2.16) BS01 A1IN6 N/A GO:0003755 ... Q13451 39752587
    981909 9gq8:B (2.16) BS01 A1IN6 N/A GO:0003755 ... Q13451 39752587
    981910 9gq9:A (2.0) BS01 A1IN3 N/A GO:0003755 ... Q13451 39752587
    981911 9gq9:B (2.0) BS01 A1IN3 N/A GO:0003755 ... Q13451 39752587
    981912 9gqa:A (1.93) BS01 A1IN7 N/A GO:0003755 ... Q13451 39752587
    981913 9gqa:B (1.93) BS01 A1IN7 N/A GO:0003755 ... Q13451 39752587
    981914 9gqb:A (2.0) BS01 A1IN8 N/A GO:0003755 ... Q13451 39752587
    981915 9gqb:B (2.0) BS01 A1IN8 N/A GO:0003755 ... Q13451 39752587
    981916 9gqc:A (2.5) BS01 A1IN9 N/A GO:0003755 ... Q13451 39752587
    981917 9gqc:B (2.5) BS01 A1IN9 N/A GO:0003755 ... Q13451 39752587
    981918 9gqd:A (2.5) BS01 A1IOA N/A GO:0003755 ... Q13451 39752587
    981919 9gqd:B (2.5) BS01 A1IOA N/A GO:0003755 ... Q13451 39752587
    981920 9gqe:A (2.5) BS01 A1IOB N/A GO:0003755 ... Q13451 39752587
    981921 9gqe:B (2.5) BS01 A1IOB N/A GO:0003755 ... Q13451 39752587
    981922 9gqf:A (1.8) BS01 A1IOC N/A GO:0003755 ... Q13451 39752587
    981923 9gqf:B (1.8) BS01 A1IOC N/A GO:0003755 ... Q13451 39752587
    981924 9gqg:A (2.0) BS01 A1IOG N/A GO:0003755 ... Q13451 39752587
    981925 9gqg:B (2.0) BS01 A1IOG N/A GO:0003755 ... Q13451 39752587
    981926 9gqh:A (2.6) BS01 A1IOH N/A GO:0003755 ... Q13451 39752587
    981927 9gqh:B (2.6) BS01 A1IOH N/A GO:0003755 ... Q13451 39752587
    981928 9gqi:A (1.5) BS01 A1IOF N/A GO:0003755 ... Q13451 39752587
    981929 9gqi:B (1.5) BS01 A1IOF N/A GO:0003755 ... Q13451 39752587
    981930 9gqj:A (1.65) BS01 A1IOD N/A GO:0003755 ... Q13451 39752587
    981931 9gqj:B (1.65) BS01 A1IOD N/A GO:0003755 ... Q13451 39752587
    981932 9gqk:A (1.7) BS01 A1IOE N/A GO:0003755 ... Q13451 39752587
    981933 9gqk:B (1.7) BS01 A1IOE N/A GO:0003755 ... Q13451 39752587
    981934 9gql:A (1.401) BS01 A1IOS N/A GO:0005515 ... P36639 40878820
    981935 9gqm:A (1.01) BS01 FUC N/A N/A P10153 N/A
    981936 9gqm:A (1.01) BS02 GLC N/A N/A P10153 N/A
    981937 9gqo:A (3.46) BS01 CA N/A GO:0000166 ... Q8Y8Q5 40016426
    981938 9gqo:A (3.46) BS02 PO3 N/A GO:0000166 ... Q8Y8Q5 40016426
    981939 9gqo:A (3.46) BS03 MG N/A GO:0000166 ... Q8Y8Q5 40016426
    981940 9gqp:A (1.01) BS01 SLB N/A N/A P10153 N/A
    981941 9gqp:A (1.01) BS02 SLB N/A N/A P10153 N/A
    981942 9gqp:A (1.01) BS03 SLB N/A N/A P10153 N/A
    981943 9gqp:A (1.01) BS04 SLB N/A N/A P10153 N/A
    981944 9gqq:A (1.78) BS01 CA N/A GO:0004308 ... A0A509GK44 40924000
    981945 9gqq:A (1.78) BS02 CA N/A GO:0004308 ... A0A509GK44 40924000
    981946 9gqq:B (1.78) BS01 CA N/A GO:0004308 ... A0A509GK44 40924000
    981947 9gqq:B (1.78) BS02 CA N/A GO:0004308 ... A0A509GK44 40924000
    981948 9gqs:A (2.5) BS01 MAN N/A GO:0009298 ... B0K2C2 N/A
    981949 9gqs:B (2.5) BS01 MAN N/A GO:0009298 ... B0K2C2 N/A
    981950 9gqt:A (1.94) BS01 CA N/A GO:0004308 ... A0A509GK44 40924000
    981951 9gqt:A (1.94) BS02 CA N/A GO:0004308 ... A0A509GK44 40924000
    981952 9gqt:B (1.94) BS01 CA N/A GO:0004308 ... A0A509GK44 40924000
    981953 9gqt:B (1.94) BS02 CA N/A GO:0004308 ... A0A509GK44 40924000
    981954 9gqv:A (1.766) BS01 A1IOR N/A GO:0004315 ... G3XDA2 40233425
    981955 9gqv:B (1.766) BS01 A1IOR N/A GO:0004315 ... G3XDA2 40233425
    981956 9gqx:A (1.98) BS01 CA N/A GO:0004308 ... A0A8K1VZ50 40924000
    981957 9gqx:A (1.98) BS02 CA N/A GO:0004308 ... A0A8K1VZ50 40924000
    981958 9gqx:B (1.98) BS01 BMA N/A GO:0004308 ... A0A8K1VZ50 40924000
    981959 9gqx:B (1.98) BS02 CA N/A GO:0004308 ... A0A8K1VZ50 40924000
    981960 9gqx:B (1.98) BS03 CA N/A GO:0004308 ... A0A8K1VZ50 40924000
    981961 9gqy:B (2.8) BS01 FAD N/A GO:0016491 ... O95831 40578348
    981962 9gqy:B (2.8) BS02 NAD N/A GO:0016491 ... O95831 40578348
    981963 9gqy:C (2.8) BS01 FAD N/A GO:0016491 ... O95831 40578348
    981964 9gqy:C (2.8) BS02 NAD N/A GO:0016491 ... O95831 40578348
    981965 9gqz:B (2.36) BS01 peptide N/A GO:0016491 ... O95831 40578348
    981966 9gqz:B (2.36) BS02 FAD N/A GO:0016491 ... O95831 40578348
    981967 9gqz:B (2.36) BS03 NAD N/A GO:0016491 ... O95831 40578348
    981968 9gqz:C (2.36) BS01 peptide N/A GO:0016491 ... O95831 40578348
    981969 9gqz:C (2.36) BS02 FAD N/A GO:0016491 ... O95831 40578348
    981970 9gqz:C (2.36) BS03 NAD N/A GO:0016491 ... O95831 40578348
    981971 9gr0:B (2.61) BS01 peptide N/A GO:0016491 ... O95831 40578348
    981972 9gr0:B (2.61) BS02 FAD N/A GO:0016491 ... O95831 40578348
    981973 9gr0:B (2.61) BS03 NAD N/A GO:0016491 ... O95831 40578348
    981974 9gr0:C (2.61) BS01 peptide N/A GO:0016491 ... O95831 40578348
    981975 9gr0:C (2.61) BS02 FAD N/A GO:0016491 ... O95831 40578348
    981976 9gr0:C (2.61) BS03 NAD N/A GO:0016491 ... O95831 40578348
    981977 9gr1:0 (3.17) BS01 rna N/A GO:0000027 ... P0A7N9 39607923
    981978 9gr1:1 (3.17) BS01 rna N/A GO:0002181 ... P0A7P5 39607923
    981979 9gr1:2 (3.17) BS01 rna N/A GO:0002181 ... P0A7Q1 39607923
    981980 9gr1:3 (3.17) BS01 rna N/A GO:0002181 ... P0A7Q6 39607923
    981981 9gr1:3 (3.17) BS02 ZN N/A GO:0002181 ... P0A7Q6 39607923
    981982 9gr1:B (3.17) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    981983 9gr1:C (3.17) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    981984 9gr1:D (3.17) BS01 rna N/A GO:0000028 ... P0A7V8 39607923
    981985 9gr1:E (3.17) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    981986 9gr1:E (3.17) BS02 rna N/A GO:0000028 ... P0A7W1 39607923
    981987 9gr1:F (3.17) BS01 rna N/A GO:0002181 ... P02358 39607923
    981988 9gr1:G (3.17) BS01 rna N/A GO:0000028 ... P02359 39607923
    981989 9gr1:G (3.17) BS02 rna N/A GO:0000028 ... P02359 39607923
    981990 9gr1:G (3.17) BS03 rna N/A GO:0000028 ... P02359 39607923
    981991 9gr1:H (3.17) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    981992 9gr1:I (3.17) BS01 rna N/A GO:0002181 ... P0A7X3 39607923
    981993 9gr1:I (3.17) BS02 rna N/A GO:0002181 ... P0A7X3 39607923
    981994 9gr1:J (3.17) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    981995 9gr1:K (3.17) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    981996 9gr1:L (3.17) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    981997 9gr1:M (3.17) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    981998 9gr1:N (3.17) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    981999 9gr1:O (3.17) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    982000 9gr1:O (3.17) BS02 rna N/A GO:0000028 ... P0ADZ4 39607923

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).