SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    982601 9gui:B (3.0) BS04 AKG N/A GO:0003677 ... P29283 39995039
    982602 9guj:A (4.3) BS01 dna N/A GO:0003677 ... P29283 39995039
    982603 9guj:A (4.3) BS02 dna N/A GO:0003677 ... P29283 39995039
    982604 9guj:A (4.3) BS03 AKG N/A GO:0003677 ... P29283 39995039
    982605 9guj:A (4.3) BS04 AKG N/A GO:0003677 ... P29283 39995039
    982606 9guj:B (4.3) BS01 dna N/A GO:0003677 ... P29283 39995039
    982607 9guj:B (4.3) BS02 AKG N/A GO:0003677 ... P29283 39995039
    982608 9guj:D (4.3) BS01 dna N/A GO:0003677 ... P29283 39995039
    982609 9guj:D (4.3) BS02 dna N/A GO:0003677 ... P29283 39995039
    982610 9guj:D (4.3) BS03 AKG N/A GO:0003677 ... P29283 39995039
    982611 9guj:F (4.3) BS01 dna N/A GO:0003677 ... P29283 39995039
    982612 9guj:F (4.3) BS02 dna N/A GO:0003677 ... P29283 39995039
    982613 9guj:F (4.3) BS03 AKG N/A GO:0003677 ... P29283 39995039
    982614 9guk:A (3.8) BS01 dna N/A GO:0003677 ... P29283 39995039
    982615 9guk:A (3.8) BS02 dna N/A GO:0003677 ... P29283 39995039
    982616 9guk:A (3.8) BS03 AKG N/A GO:0003677 ... P29283 39995039
    982617 9guk:B (3.8) BS01 dna N/A GO:0003677 ... P29283 39995039
    982618 9guk:B (3.8) BS02 dna N/A GO:0003677 ... P29283 39995039
    982619 9guk:B (3.8) BS03 AKG N/A GO:0003677 ... P29283 39995039
    982620 9guk:D (3.8) BS01 dna N/A GO:0003677 ... P29283 39995039
    982621 9guk:D (3.8) BS02 dna N/A GO:0003677 ... P29283 39995039
    982622 9guk:D (3.8) BS03 AKG N/A GO:0003677 ... P29283 39995039
    982623 9guk:F (3.8) BS01 dna N/A GO:0003677 ... P29283 39995039
    982624 9guk:F (3.8) BS02 dna N/A GO:0003677 ... P29283 39995039
    982625 9guk:F (3.8) BS03 AKG N/A GO:0003677 ... P29283 39995039
    982626 9gul:1 (2.2) BS01 rna N/A N/A N/A 40973728
    982627 9gul:LA (2.2) BS01 rna N/A GO:0002181 ... P62917 40973728
    982628 9gul:LA (2.2) BS02 MG N/A GO:0002181 ... P62917 40973728
    982629 9gul:LA (2.2) BS03 MG N/A GO:0002181 ... P62917 40973728
    982630 9gul:LB (2.2) BS01 rna N/A GO:0002181 ... P39023 40973728
    982631 9gul:LC (2.2) BS01 rna N/A GO:0002181 ... P36578 40973728
    982632 9gul:LC (2.2) BS02 rna N/A GO:0002181 ... P36578 40973728
    982633 9gul:LD (2.2) BS01 rna N/A GO:0000027 ... P46777 40973728
    982634 9gul:LD (2.2) BS02 rna N/A GO:0000027 ... P46777 40973728
    982635 9gul:LE (2.2) BS01 rna N/A GO:0002181 ... Q02878 40973728
    982636 9gul:LF (2.2) BS01 rna N/A GO:0000463 ... P18124 40973728
    982637 9gul:LF (2.2) BS02 rna N/A GO:0000463 ... P18124 40973728
    982638 9gul:LG (2.2) BS01 rna N/A GO:0000470 ... P62424 40973728
    982639 9gul:LG (2.2) BS02 rna N/A GO:0000470 ... P62424 40973728
    982640 9gul:LH (2.2) BS01 rna N/A GO:0002181 ... P32969 40973728
    982641 9gul:LI (2.2) BS01 rna N/A GO:0000027 ... Q96L21 40973728
    982642 9gul:LI (2.2) BS02 rna N/A GO:0000027 ... Q96L21 40973728
    982643 9gul:LJ (2.2) BS01 rna N/A GO:0000027 ... P62913 40973728
    982644 9gul:LJ (2.2) BS02 rna N/A GO:0000027 ... P62913 40973728
    982645 9gul:LL (2.2) BS01 rna N/A GO:0002181 ... P26373 40973728
    982646 9gul:LM (2.2) BS01 rna N/A GO:0002181 ... P50914 40973728
    982647 9gul:LN (2.2) BS01 rna N/A GO:0002181 ... P61313 40973728
    982648 9gul:LN (2.2) BS02 rna N/A GO:0002181 ... P61313 40973728
    982649 9gul:LO (2.2) BS01 rna N/A GO:0002181 ... P40429 40973728
    982650 9gul:LP (2.2) BS01 rna N/A GO:0002181 ... P18621 40973728
    982651 9gul:LP (2.2) BS02 rna N/A GO:0002181 ... P18621 40973728
    982652 9gul:LQ (2.2) BS01 rna N/A GO:0002181 ... Q07020 40973728
    982653 9gul:LR (2.2) BS01 rna N/A GO:0002181 ... P84098 40973728
    982654 9gul:LS (2.2) BS01 rna N/A GO:0002181 ... Q02543 40973728
    982655 9gul:LS (2.2) BS02 rna N/A GO:0002181 ... Q02543 40973728
    982656 9gul:LT (2.2) BS01 rna N/A GO:0001650 ... P46778 40973728
    982657 9gul:LU (2.2) BS01 rna N/A GO:0002181 ... P35268 40973728
    982658 9gul:LV (2.2) BS01 rna N/A GO:0000122 ... P62829 40973728
    982659 9gul:LW (2.2) BS01 rna N/A GO:0002181 ... P83731 40973728
    982660 9gul:LX (2.2) BS01 rna N/A GO:0002181 ... P62750 40973728
    982661 9gul:LX (2.2) BS02 rna N/A GO:0002181 ... P62750 40973728
    982662 9gul:LY (2.2) BS01 rna N/A GO:0002181 ... P61254 40973728
    982663 9gul:LY (2.2) BS02 rna N/A GO:0002181 ... P61254 40973728
    982664 9gul:LZ (2.2) BS01 rna N/A GO:0002181 ... P61353 40973728
    982665 9gul:La (2.2) BS01 rna N/A GO:0002181 ... P46776 40973728
    982666 9gul:Lb (2.2) BS01 rna N/A GO:0002181 ... P47914 40973728
    982667 9gul:Lc (2.2) BS01 rna N/A GO:0002181 ... P62888 40973728
    982668 9gul:Ld (2.2) BS01 rna N/A GO:0002181 ... P62899 40973728
    982669 9gul:Le (2.2) BS01 rna N/A GO:0002181 ... P62910 40973728
    982670 9gul:Le (2.2) BS02 MG N/A GO:0002181 ... P62910 40973728
    982671 9gul:Le (2.2) BS03 MG N/A GO:0002181 ... P62910 40973728
    982672 9gul:Lf (2.2) BS01 rna N/A GO:0002181 ... P18077 40973728
    982673 9gul:Lf (2.2) BS02 MG N/A GO:0002181 ... P18077 40973728
    982674 9gul:Lg (2.2) BS01 rna N/A GO:0002181 ... P49207 40973728
    982675 9gul:Lh (2.2) BS01 rna N/A GO:0000463 ... P42766 40973728
    982676 9gul:Lh (2.2) BS02 rna N/A GO:0000463 ... P42766 40973728
    982677 9gul:Li (2.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 40973728
    982678 9gul:Lj (2.2) BS01 rna N/A GO:0000448 ... P61927 40973728
    982679 9gul:Lj (2.2) BS02 rna N/A GO:0000448 ... P61927 40973728
    982680 9gul:Lj (2.2) BS03 ZN N/A GO:0000448 ... P61927 40973728
    982681 9gul:Lk (2.2) BS01 rna N/A GO:0002181 ... P63173 40973728
    982682 9gul:Ll (2.2) BS01 rna N/A GO:0002181 ... P62891 40973728
    982683 9gul:Ll (2.2) BS02 rna N/A GO:0002181 ... P62891 40973728
    982684 9gul:Lm (2.2) BS01 rna N/A GO:0002181 ... P62987 40973728
    982685 9gul:Lm (2.2) BS02 ZN N/A GO:0002181 ... P62987 40973728
    982686 9gul:Lo (2.2) BS01 rna N/A GO:0002181 ... P83881 40973728
    982687 9gul:Lo (2.2) BS02 ZN N/A GO:0002181 ... P83881 40973728
    982688 9gul:Lp (2.2) BS01 rna N/A GO:0002181 ... P61513 40973728
    982689 9gul:Lp (2.2) BS02 ZN N/A GO:0002181 ... P61513 40973728
    982690 9gul:Lr (2.2) BS01 rna N/A GO:0002181 ... P46779 40973728
    982691 9gum:AAA (1.7) BS01 A1IO3 N/A GO:0004064 ... P00918 39811134
    982692 9gum:AAA (1.7) BS02 ZN N/A GO:0004064 ... P00918 39811134
    982693 9guo:AAA (1.65) BS01 BXH N/A GO:0004064 ... P00918 39811134
    982694 9guo:AAA (1.65) BS02 ZN N/A GO:0004064 ... P00918 39811134
    982695 9gup:B (2.8) BS01 rna N/A GO:0000028 ... P0AG67 39607923
    982696 9gup:C (2.8) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    982697 9gup:D (2.8) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    982698 9gup:E (2.8) BS01 rna N/A GO:0000028 ... P0A7V8 39607923
    982699 9gup:F (2.8) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    982700 9gup:G (2.8) BS01 rna N/A GO:0002181 ... P02358 39607923
    982701 9gup:H (2.8) BS01 rna N/A GO:0003723 ... P02359 39607923
    982702 9gup:I (2.8) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    982703 9gup:J (2.8) BS01 rna N/A GO:0002181 ... P0A7X3 39607923
    982704 9gup:K (2.8) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    982705 9gup:L (2.8) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    982706 9gup:M (2.8) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    982707 9gup:N (2.8) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    982708 9gup:O (2.8) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    982709 9gup:P (2.8) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    982710 9gup:Q (2.8) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    982711 9gup:R (2.8) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    982712 9gup:S (2.8) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    982713 9gup:T (2.8) BS01 rna N/A GO:0002181 ... P0A7U3 39607923
    982714 9gup:U (2.8) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    982715 9gup:V (2.8) BS01 rna N/A GO:0000028 ... P68679 39607923
    982716 9gup:V (2.8) BS02 rna N/A GO:0000028 ... P68679 39607923
    982717 9guq:C (3.1) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    982718 9guq:D (3.1) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    982719 9guq:D (3.1) BS02 rna N/A GO:0000028 ... P0A7V3 39607923
    982720 9guq:E (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 39607923
    982721 9guq:F (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    982722 9guq:F (3.1) BS02 rna N/A GO:0000028 ... P0A7W1 39607923
    982723 9guq:G (3.1) BS01 rna N/A GO:0002181 ... P02358 39607923
    982724 9guq:H (3.1) BS01 rna N/A GO:0003723 ... P02359 39607923
    982725 9guq:I (3.1) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    982726 9guq:J (3.1) BS01 rna N/A GO:0002181 ... P0A7X3 39607923
    982727 9guq:J (3.1) BS02 rna N/A GO:0002181 ... P0A7X3 39607923
    982728 9guq:K (3.1) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    982729 9guq:L (3.1) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    982730 9guq:M (3.1) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    982731 9guq:N (3.1) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    982732 9guq:O (3.1) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    982733 9guq:P (3.1) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    982734 9guq:Q (3.1) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    982735 9guq:R (3.1) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    982736 9guq:S (3.1) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    982737 9guq:T (3.1) BS01 rna N/A GO:0002181 ... P0A7U3 39607923
    982738 9guq:U (3.1) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    982739 9guq:V (3.1) BS01 rna N/A GO:0000028 ... P68679 39607923
    982740 9guq:V (3.1) BS02 rna N/A GO:0000028 ... P68679 39607923
    982741 9gur:3 (4.2) BS01 dna N/A GO:0000345 ... P0A8V2 39607923
    982742 9gur:3 (4.2) BS02 dna N/A GO:0000345 ... P0A8V2 39607923
    982743 9gur:3 (4.2) BS03 rna N/A GO:0000345 ... P0A8V2 39607923
    982744 9gur:4 (4.2) BS01 dna N/A GO:0000287 ... P0A8T7 39607923
    982745 9gur:4 (4.2) BS02 dna N/A GO:0000287 ... P0A8T7 39607923
    982746 9gur:4 (4.2) BS03 rna N/A GO:0000287 ... P0A8T7 39607923
    982747 9gur:4 (4.2) BS04 MG N/A GO:0000287 ... P0A8T7 39607923
    982748 9gur:4 (4.2) BS05 ZN N/A GO:0000287 ... P0A8T7 39607923
    982749 9gur:4 (4.2) BS06 ZN N/A GO:0000287 ... P0A8T7 39607923
    982750 9gur:Z (4.2) BS01 dna N/A GO:0006354 ... P0AFG0 39607923
    982751 9gus:B (3.5) BS01 rna N/A GO:0000028 ... P0AG67 39607923
    982752 9gus:C (3.5) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    982753 9gus:D (3.5) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    982754 9gus:E (3.5) BS01 rna N/A GO:0000028 ... P0A7V8 39607923
    982755 9gus:F (3.5) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    982756 9gus:F (3.5) BS02 rna N/A GO:0000028 ... P0A7W1 39607923
    982757 9gus:G (3.5) BS01 rna N/A GO:0002181 ... P02358 39607923
    982758 9gus:H (3.5) BS01 rna N/A GO:0003723 ... P02359 39607923
    982759 9gus:I (3.5) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    982760 9gus:J (3.5) BS01 rna N/A GO:0002181 ... P0A7X3 39607923
    982761 9gus:K (3.5) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    982762 9gus:L (3.5) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    982763 9gus:M (3.5) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    982764 9gus:N (3.5) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    982765 9gus:O (3.5) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    982766 9gus:P (3.5) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    982767 9gus:Q (3.5) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    982768 9gus:R (3.5) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    982769 9gus:S (3.5) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    982770 9gus:S (3.5) BS02 rna N/A GO:0002181 ... P0A7T7 39607923
    982771 9gus:T (3.5) BS01 rna N/A GO:0002181 ... P0A7U3 39607923
    982772 9gus:U (3.5) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    982773 9gus:V (3.5) BS01 rna N/A GO:0000028 ... P68679 39607923
    982774 9gus:V (3.5) BS02 rna N/A GO:0000028 ... P68679 39607923
    982775 9gut:C (2.8) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    982776 9gut:D (2.8) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    982777 9gut:E (2.8) BS01 rna N/A GO:0000028 ... P0A7V8 39607923
    982778 9gut:F (2.8) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    982779 9gut:F (2.8) BS02 rna N/A GO:0000028 ... P0A7W1 39607923
    982780 9gut:G (2.8) BS01 rna N/A GO:0002181 ... P02358 39607923
    982781 9gut:H (2.8) BS01 rna N/A GO:0003723 ... P02359 39607923
    982782 9gut:I (2.8) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    982783 9gut:J (2.8) BS01 rna N/A GO:0002181 ... P0A7X3 39607923
    982784 9gut:K (2.8) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    982785 9gut:L (2.8) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    982786 9gut:M (2.8) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    982787 9gut:N (2.8) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    982788 9gut:O (2.8) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    982789 9gut:P (2.8) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    982790 9gut:Q (2.8) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    982791 9gut:R (2.8) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    982792 9gut:S (2.8) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    982793 9gut:T (2.8) BS01 rna N/A GO:0002181 ... P0A7U3 39607923
    982794 9gut:U (2.8) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    982795 9gut:V (2.8) BS01 rna N/A GO:0000028 ... P68679 39607923
    982796 9guu:C (2.5) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    982797 9guu:D (2.5) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    982798 9guu:E (2.5) BS01 rna N/A GO:0000028 ... P0A7V8 39607923
    982799 9guu:F (2.5) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    982800 9guu:F (2.5) BS02 rna N/A GO:0000028 ... P0A7W1 39607923

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).