SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    982801 9guu:G (2.5) BS01 rna N/A GO:0002181 ... P02358 39607923
    982802 9guu:H (2.5) BS01 rna N/A GO:0003723 ... P02359 39607923
    982803 9guu:I (2.5) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    982804 9guu:J (2.5) BS01 rna N/A GO:0002181 ... P0A7X3 39607923
    982805 9guu:K (2.5) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    982806 9guu:L (2.5) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    982807 9guu:M (2.5) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    982808 9guu:N (2.5) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    982809 9guu:O (2.5) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    982810 9guu:P (2.5) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    982811 9guu:Q (2.5) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    982812 9guu:R (2.5) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    982813 9guu:S (2.5) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    982814 9guu:T (2.5) BS01 rna N/A GO:0002181 ... P0A7U3 39607923
    982815 9guu:U (2.5) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    982816 9guu:V (2.5) BS01 rna N/A GO:0000028 ... P68679 39607923
    982817 9guu:V (2.5) BS02 rna N/A GO:0000028 ... P68679 39607923
    982818 9guv:C (3.0) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    982819 9guv:D (3.0) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    982820 9guv:E (3.0) BS01 rna N/A GO:0000028 ... P0A7V8 39607923
    982821 9guv:E (3.0) BS02 rna N/A GO:0000028 ... P0A7V8 39607923
    982822 9guv:F (3.0) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    982823 9guv:F (3.0) BS02 rna N/A GO:0000028 ... P0A7W1 39607923
    982824 9guv:G (3.0) BS01 rna N/A GO:0002181 ... P02358 39607923
    982825 9guv:H (3.0) BS01 rna N/A GO:0003723 ... P02359 39607923
    982826 9guv:I (3.0) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    982827 9guv:J (3.0) BS01 rna N/A GO:0002181 ... P0A7X3 39607923
    982828 9guv:K (3.0) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    982829 9guv:L (3.0) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    982830 9guv:M (3.0) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    982831 9guv:N (3.0) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    982832 9guv:O (3.0) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    982833 9guv:P (3.0) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    982834 9guv:Q (3.0) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    982835 9guv:R (3.0) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    982836 9guv:S (3.0) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    982837 9guv:T (3.0) BS01 rna N/A GO:0002181 ... P0A7U3 39607923
    982838 9guv:U (3.0) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    982839 9guv:V (3.0) BS01 rna N/A GO:0000028 ... P68679 39607923
    982840 9guv:V (3.0) BS02 rna N/A GO:0000028 ... P68679 39607923
    982841 9guw:3 (3.1) BS01 rna N/A GO:0000345 ... P0A8V2 39607923
    982842 9guw:3 (3.1) BS02 dna N/A GO:0000345 ... P0A8V2 39607923
    982843 9guw:3 (3.1) BS03 dna N/A GO:0000345 ... P0A8V2 39607923
    982844 9guw:4 (3.1) BS01 rna N/A GO:0000287 ... P0A8T7 39607923
    982845 9guw:4 (3.1) BS02 dna N/A GO:0000287 ... P0A8T7 39607923
    982846 9guw:4 (3.1) BS03 dna N/A GO:0000287 ... P0A8T7 39607923
    982847 9guw:4 (3.1) BS04 ZN N/A GO:0000287 ... P0A8T7 39607923
    982848 9guw:4 (3.1) BS05 ZN N/A GO:0000287 ... P0A8T7 39607923
    982849 9guw:C (3.1) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    982850 9guw:D (3.1) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    982851 9guw:E (3.1) BS01 rna N/A GO:0000028 ... P0A7V8 39607923
    982852 9guw:F (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    982853 9guw:G (3.1) BS01 rna N/A GO:0002181 ... P02358 39607923
    982854 9guw:H (3.1) BS01 rna N/A GO:0003723 ... P02359 39607923
    982855 9guw:I (3.1) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    982856 9guw:J (3.1) BS01 rna N/A GO:0002181 ... P0A7X3 39607923
    982857 9guw:K (3.1) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    982858 9guw:L (3.1) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    982859 9guw:M (3.1) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    982860 9guw:N (3.1) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    982861 9guw:O (3.1) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    982862 9guw:P (3.1) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    982863 9guw:Q (3.1) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    982864 9guw:R (3.1) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    982865 9guw:S (3.1) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    982866 9guw:T (3.1) BS01 rna N/A GO:0002181 ... P0A7U3 39607923
    982867 9guw:U (3.1) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    982868 9guw:Z (3.1) BS01 dna N/A GO:0005515 ... P0AFG0 39607923
    982869 9guw:Z (3.1) BS02 dna N/A GO:0005515 ... P0AFG0 39607923
    982870 9gux:3 (3.3) BS01 rna N/A GO:0000345 ... P0A8V2 39607923
    982871 9gux:3 (3.3) BS02 dna N/A GO:0000345 ... P0A8V2 39607923
    982872 9gux:3 (3.3) BS03 dna N/A GO:0000345 ... P0A8V2 39607923
    982873 9gux:4 (3.3) BS01 dna N/A GO:0000287 ... P0A8T7 39607923
    982874 9gux:4 (3.3) BS02 dna N/A GO:0000287 ... P0A8T7 39607923
    982875 9gux:4 (3.3) BS03 ZN N/A GO:0000287 ... P0A8T7 39607923
    982876 9gux:4 (3.3) BS04 ZN N/A GO:0000287 ... P0A8T7 39607923
    982877 9gux:B (3.3) BS01 rna N/A GO:0000028 ... P0AG67 39607923
    982878 9gux:C (3.3) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    982879 9gux:D (3.3) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    982880 9gux:E (3.3) BS01 rna N/A GO:0000028 ... P0A7V8 39607923
    982881 9gux:F (3.3) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    982882 9gux:G (3.3) BS01 rna N/A GO:0002181 ... P02358 39607923
    982883 9gux:H (3.3) BS01 rna N/A GO:0003723 ... P02359 39607923
    982884 9gux:I (3.3) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    982885 9gux:J (3.3) BS01 rna N/A GO:0002181 ... P0A7X3 39607923
    982886 9gux:K (3.3) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    982887 9gux:L (3.3) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    982888 9gux:M (3.3) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    982889 9gux:N (3.3) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    982890 9gux:O (3.3) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    982891 9gux:P (3.3) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    982892 9gux:Q (3.3) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    982893 9gux:R (3.3) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    982894 9gux:S (3.3) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    982895 9gux:T (3.3) BS01 rna N/A GO:0002181 ... P0A7U3 39607923
    982896 9gux:U (3.3) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    982897 9gux:V (3.3) BS01 rna N/A GO:0000028 ... P68679 39607923
    982898 9gux:Z (3.3) BS01 dna N/A GO:0005515 ... P0AFG0 39607923
    982899 9guy:B (2.1) BS01 A1IOL N/A GO:0004483 ... P0DTD1 N/A
    982900 9guy:B (2.1) BS02 SAM N/A GO:0004483 ... P0DTD1 N/A
    982901 9guy:C (2.1) BS01 ZN N/A GO:0003723 ... P0DTD1 N/A
    982902 9guy:C (2.1) BS02 ZN N/A GO:0003723 ... P0DTD1 N/A
    982903 9gv2:A (2.56) BS01 A1IPK N/A GO:0008233 ... P0DTD1 39813204
    982904 9gv2:B (2.56) BS01 A1IPK N/A GO:0008233 ... P0DTD1 39813204
    982905 9gv6:A (2.77) BS01 peptide N/A N/A A0A5B8RNS7 40154610
    982906 9gv6:D (2.77) BS01 peptide N/A N/A N/A 40154610
    982907 9gv6:E (2.77) BS01 peptide N/A N/A N/A 40154610
    982908 9gv6:G (2.77) BS01 peptide N/A N/A A0A5B8RNS7 40154610
    982909 9gv6:J (2.77) BS01 peptide N/A N/A N/A 40154610
    982910 9gv6:K (2.77) BS01 peptide N/A N/A N/A 40154610
    982911 9gv7:A (1.86) BS01 peptide N/A N/A A0A5B8RNS7 40154610
    982912 9gv7:D (1.86) BS01 peptide N/A N/A N/A 40154610
    982913 9gv9:A (1.715) BS01 SUS N/A N/A E5WZ15 N/A
    982914 9gv9:A (1.715) BS02 GCD N/A N/A E5WZ15 N/A
    982915 9gv9:A (1.715) BS03 CA N/A N/A E5WZ15 N/A
    982916 9gv9:B (1.715) BS01 SUS N/A N/A E5WZ15 N/A
    982917 9gv9:B (1.715) BS02 GCD N/A N/A E5WZ15 N/A
    982918 9gv9:B (1.715) BS03 CA N/A N/A E5WZ15 N/A
    982919 9gva:AAA (2.4) BS01 ZN N/A N/A Q7MV79 39647519
    982920 9gva:BBB (2.4) BS01 ZN N/A N/A Q7MV79 39647519
    982921 9gva:CCC (2.4) BS01 ZN N/A N/A Q7MV79 39647519
    982922 9gvb:A (2.97) BS01 CA N/A GO:0030246 ... A0AEF6 N/A
    982923 9gvb:B (2.97) BS01 CA N/A GO:0000272 ... N/A N/A
    982924 9gvb:C (2.97) BS01 CA N/A GO:0000272 ... N/A N/A
    982925 9gvd:A (1.2) BS01 MN N/A GO:0005737 ... Q1M964 N/A
    982926 9gve:A (1.49) BS01 MN N/A GO:0005737 ... Q1M964 N/A
    982927 9gve:A (1.49) BS02 SV7 N/A GO:0005737 ... Q1M964 N/A
    982928 9gvj:A (2.91) BS01 CA N/A N/A P98088 40035770
    982929 9gvj:A (2.91) BS02 CA N/A N/A P98088 40035770
    982930 9gvj:A (2.91) BS03 CU N/A N/A P98088 40035770
    982931 9gvj:B (2.91) BS01 CA N/A N/A P98088 40035770
    982932 9gvj:B (2.91) BS02 CA N/A N/A P98088 40035770
    982933 9gvj:B (2.91) BS03 CU N/A N/A P98088 40035770
    982934 9gvj:C (2.91) BS01 CA N/A N/A P98088 40035770
    982935 9gvj:D (2.91) BS01 CA N/A N/A P98088 40035770
    982936 9gvk:D (3.5) BS01 MG N/A GO:0005524 ... P75957 39725716
    982937 9gvk:D (3.5) BS02 ATP N/A GO:0005524 ... P75957 39725716
    982938 9gvk:D (3.5) BS03 ATP N/A GO:0005524 ... P75957 39725716
    982939 9gvk:F (3.5) BS01 ATP N/A GO:0005524 ... P75957 39725716
    982940 9gvk:F (3.5) BS02 ATP N/A GO:0005524 ... P75957 39725716
    982941 9gvk:F (3.5) BS03 MG N/A GO:0005524 ... P75957 39725716
    982942 9gvm:A (1.67) BS01 SAH N/A GO:0005737 ... P40261 40209950
    982943 9gvm:A (1.67) BS02 A1IPM N/A GO:0005737 ... P40261 40209950
    982944 9gvm:B (1.67) BS01 SAH N/A GO:0005737 ... P40261 40209950
    982945 9gvm:B (1.67) BS02 A1IPM N/A GO:0005737 ... P40261 40209950
    982946 9gvp:A (2.05) BS01 A1IPP N/A GO:0003677 ... P37231 N/A
    982947 9gvp:B (2.05) BS01 A1IPP N/A GO:0003677 ... P37231 N/A
    982948 9gvq:A (3.9) BS01 CA N/A N/A P98088 40035770
    982949 9gvq:A (3.9) BS02 CA N/A N/A P98088 40035770
    982950 9gvq:A (3.9) BS03 CU N/A N/A P98088 40035770
    982951 9gvq:A (3.9) BS04 CA N/A N/A P98088 40035770
    982952 9gvq:B (3.9) BS01 CA N/A N/A P98088 40035770
    982953 9gvq:B (3.9) BS02 CA N/A N/A P98088 40035770
    982954 9gvq:B (3.9) BS03 CU N/A N/A P98088 40035770
    982955 9gvq:B (3.9) BS04 CA N/A N/A P98088 40035770
    982956 9gvq:C (3.9) BS01 CA N/A N/A P98088 40035770
    982957 9gvq:C (3.9) BS02 CA N/A N/A P98088 40035770
    982958 9gvq:C (3.9) BS03 CU N/A N/A P98088 40035770
    982959 9gvq:C (3.9) BS04 CA N/A N/A P98088 40035770
    982960 9gvq:D (3.9) BS01 CA N/A N/A P98088 40035770
    982961 9gvq:D (3.9) BS02 CA N/A N/A P98088 40035770
    982962 9gvq:D (3.9) BS03 CU N/A N/A P98088 40035770
    982963 9gvq:D (3.9) BS04 CA N/A N/A P98088 40035770
    982964 9gvs:B (2.1) BS01 A1IPR N/A GO:0003677 ... P37231 N/A
    982965 9gvt:B (2.3) BS01 A1IPQ N/A GO:0003677 ... P37231 N/A
    982966 9gvu:A (2.1) BS01 peptide N/A GO:0003924 ... P51159 N/A
    982967 9gvu:A (2.1) BS02 MG N/A GO:0003924 ... P51159 N/A
    982968 9gvu:A (2.1) BS03 GNP N/A GO:0003924 ... P51159 N/A
    982969 9gvu:B (2.1) BS01 peptide N/A GO:0003924 ... P51159 N/A
    982970 9gvu:B (2.1) BS02 MG N/A GO:0003924 ... P51159 N/A
    982971 9gvu:B (2.1) BS03 GNP N/A GO:0003924 ... P51159 N/A
    982972 9gvw:A (1.241) BS01 A1IPO N/A GO:0005737 ... P40261 40209950
    982973 9gvw:A (1.241) BS02 SAH N/A GO:0005737 ... P40261 40209950
    982974 9gvw:B (1.241) BS01 A1IPO N/A GO:0005737 ... P40261 40209950
    982975 9gvw:B (1.241) BS02 SAH N/A GO:0005737 ... P40261 40209950
    982976 9gvx:A (2.1) BS01 A1IQZ N/A GO:0001972 ... P29373 40104796
    982977 9gvy:A (2.05) BS01 A1IQY N/A GO:0001972 ... P29373 40104796
    982978 9gvz:A (3.0) BS01 A1IQ0 N/A GO:0001972 ... P29373 40104796
    982979 9gw0:A (2.4) BS01 A1IQ1 N/A GO:0001972 ... P29373 40104796
    982980 9gw2:a (4.84) BS01 dna N/A GO:0000786 ... Q71DI3 41162378
    982981 9gw2:a (4.84) BS02 dna N/A GO:0000786 ... Q71DI3 41162378
    982982 9gw2:b (4.84) BS01 dna N/A GO:0000781 ... P62805 41162378
    982983 9gw2:b (4.84) BS02 dna N/A GO:0000781 ... P62805 41162378
    982984 9gw2:c (4.84) BS01 dna N/A GO:0000786 ... P04908 41162378
    982985 9gw2:c (4.84) BS02 dna N/A GO:0000786 ... P04908 41162378
    982986 9gw2:d (4.84) BS01 dna N/A GO:0000786 ... O60814 41162378
    982987 9gw2:d (4.84) BS02 dna N/A GO:0000786 ... O60814 41162378
    982988 9gw2:e (4.84) BS01 dna N/A GO:0000786 ... Q71DI3 41162378
    982989 9gw2:e (4.84) BS02 dna N/A GO:0000786 ... Q71DI3 41162378
    982990 9gw2:f (4.84) BS01 dna N/A GO:0000781 ... P62805 41162378
    982991 9gw2:f (4.84) BS02 dna N/A GO:0000781 ... P62805 41162378
    982992 9gw2:g (4.84) BS01 dna N/A GO:0000786 ... P04908 41162378
    982993 9gw2:g (4.84) BS02 dna N/A GO:0000786 ... P04908 41162378
    982994 9gw2:g (4.84) BS03 peptide N/A GO:0000786 ... P04908 41162378
    982995 9gw2:h (4.84) BS01 dna N/A GO:0000786 ... O60814 41162378
    982996 9gw2:h (4.84) BS02 peptide N/A GO:0000786 ... O60814 41162378
    982997 9gw3:A (2.0) BS01 A1IPW N/A GO:0003677 ... P37231 N/A
    982998 9gw3:B (2.0) BS01 A1IPW N/A GO:0003677 ... P37231 N/A
    982999 9gw4:A (2.2) BS01 A1IPS N/A GO:0003677 ... P37231 N/A
    983000 9gw4:B (2.2) BS01 A1IPS N/A GO:0003677 ... P37231 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).