SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    984601 9h22:Bc (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984602 9h22:Bd (2.3) BS01 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984603 9h22:Bd (2.3) BS02 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984604 9h22:Bd (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984605 9h22:Be (2.3) BS01 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984606 9h22:Be (2.3) BS02 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984607 9h22:Be (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984608 9h22:Bf (2.3) BS01 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984609 9h22:Bf (2.3) BS02 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984610 9h22:Bf (2.3) BS03 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984611 9h22:Bf (2.3) BS04 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984612 9h22:Bg (2.3) BS01 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984613 9h22:Bg (2.3) BS02 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984614 9h22:Bg (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984615 9h22:Bh (2.3) BS01 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984616 9h22:Bh (2.3) BS02 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984617 9h22:Bh (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984618 9h22:Bh (2.3) BS04 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984619 9h22:Bi (2.3) BS01 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984620 9h22:Bi (2.3) BS02 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984621 9h22:Bi (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984622 9h22:Bj (2.3) BS01 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984623 9h22:Bj (2.3) BS02 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984624 9h22:Bj (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984625 9h22:Bj (2.3) BS04 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984626 9h22:Bk (2.3) BS01 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984627 9h22:Bk (2.3) BS02 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984628 9h22:Bk (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984629 9h22:Bl (2.3) BS01 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984630 9h22:Bl (2.3) BS02 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984631 9h22:Bl (2.3) BS03 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984632 9h22:Bl (2.3) BS04 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984633 9h22:Bm (2.3) BS01 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984634 9h22:Bm (2.3) BS02 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984635 9h22:Bm (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984636 9h22:Bn (2.3) BS01 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984637 9h22:Bn (2.3) BS02 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984638 9h22:Bn (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984639 9h22:Bo (2.3) BS01 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984640 9h22:Bo (2.3) BS02 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984641 9h22:Bo (2.3) BS03 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984642 9h22:Bp (2.3) BS01 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984643 9h22:Bp (2.3) BS02 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984644 9h22:Bp (2.3) BS03 V7N N/A GO:0005886 ... A0A6M4IQ93 41342568
    984645 9h22:Bp (2.3) BS04 BCL N/A GO:0005886 ... A0A6M4IQ93 41342568
    984646 9h22:C (2.3) BS01 HEC N/A N/A A0A6M4ITL7 41342568
    984647 9h22:C (2.3) BS02 HEC N/A N/A A0A6M4ITL7 41342568
    984648 9h22:C (2.3) BS03 HEC N/A N/A A0A6M4ITL7 41342568
    984649 9h22:C (2.3) BS04 HEC N/A N/A A0A6M4ITL7 41342568
    984650 9h22:L (2.3) BS01 BCL N/A N/A A0A6M4IPC7 41342568
    984651 9h22:L (2.3) BS02 BCL N/A N/A A0A6M4IPC7 41342568
    984652 9h22:L (2.3) BS03 BPH N/A N/A A0A6M4IPC7 41342568
    984653 9h22:L (2.3) BS04 MQ8 N/A N/A A0A6M4IPC7 41342568
    984654 9h22:L (2.3) BS05 FE N/A N/A A0A6M4IPC7 41342568
    984655 9h22:L (2.3) BS06 BCL N/A N/A A0A6M4IPC7 41342568
    984656 9h22:L (2.3) BS07 BPH N/A N/A A0A6M4IPC7 41342568
    984657 9h22:L (2.3) BS08 MQ8 N/A N/A A0A6M4IPC7 41342568
    984658 9h22:L (2.3) BS09 MQ8 N/A N/A A0A6M4IPC7 41342568
    984659 9h22:M (2.3) BS01 BCL N/A N/A A0A6M4ILR2 41342568
    984660 9h22:M (2.3) BS02 BPH N/A N/A A0A6M4ILR2 41342568
    984661 9h22:M (2.3) BS03 MQ8 N/A N/A A0A6M4ILR2 41342568
    984662 9h22:M (2.3) BS04 FE N/A N/A A0A6M4ILR2 41342568
    984663 9h22:M (2.3) BS05 BCL N/A N/A A0A6M4ILR2 41342568
    984664 9h22:M (2.3) BS06 BCL N/A N/A A0A6M4ILR2 41342568
    984665 9h22:M (2.3) BS07 BPH N/A N/A A0A6M4ILR2 41342568
    984666 9h22:M (2.3) BS08 CRT N/A N/A A0A6M4ILR2 41342568
    984667 9h22:M (2.3) BS09 MQ8 N/A N/A A0A6M4ILR2 41342568
    984668 9h28:A (3.22) BS01 CPL N/A GO:0046983 ... P14336
    P29837
    40827915
    984669 9h28:A (3.22) BS02 CPL N/A GO:0046983 ... P14336
    P29837
    40827915
    984670 9h28:B (3.22) BS01 CPL N/A GO:0046983 ... P14336
    P29837
    40827915
    984671 9h28:C (3.22) BS01 CPL N/A GO:0046983 ... P14336
    P29837
    40827915
    984672 9h29:A (2.17) BS01 CU N/A GO:0016491 ... B2ZB02 N/A
    984673 9h29:A (2.17) BS02 CU N/A GO:0016491 ... B2ZB02 N/A
    984674 9h29:B (2.17) BS01 CU N/A GO:0016491 ... B2ZB02 N/A
    984675 9h29:B (2.17) BS02 CU N/A GO:0016491 ... B2ZB02 N/A
    984676 9h2a:G (5.2) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984677 9h2a:H (5.2) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984678 9h2a:M (5.2) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984679 9h2a:N (5.2) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984680 9h2a:Y (5.2) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984681 9h2a:Z (5.2) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984682 9h2a:e (5.2) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984683 9h2a:f (5.2) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984684 9h2b:G (4.1) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984685 9h2b:H (4.1) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984686 9h2b:M (4.1) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984687 9h2b:N (4.1) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984688 9h2g:A (3.28) BS01 rna N/A GO:0004519 ... G3ECR1 41702403
    984689 9h2g:A (3.28) BS02 rna N/A GO:0004519 ... G3ECR1 41702403
    984690 9h2g:A (3.28) BS03 dna N/A GO:0004519 ... G3ECR1 41702403
    984691 9h2g:A (3.28) BS04 dna N/A GO:0004519 ... G3ECR1 41702403
    984692 9h2h:B (6.1) BS01 dna N/A GO:0044423 ... P41458 40413174
    984693 9h2h:C (6.1) BS01 dna N/A GO:0044423 ... P41458 40413174
    984694 9h2i:B (1.97) BS01 FAD N/A GO:0004148 ... P0A9P0 N/A
    984695 9h2i:C (1.97) BS01 FAD N/A GO:0004148 ... P0A9P0 N/A
    984696 9h2j:F (4.7) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984697 9h2j:G (4.7) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984698 9h2j:M (4.7) BS01 ZN N/A GO:0005198 ... P17499 40413174
    984699 9h2l:A (3.95) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    984700 9h2l:B (3.95) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    984701 9h2l:C (3.95) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    984702 9h2l:D (3.95) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    984703 9h2l:E (3.95) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    984704 9h2l:F (3.95) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    984705 9h2l:G (3.95) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    984706 9h2l:H (3.95) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    984707 9h2m:A (3.06) BS01 rna N/A GO:0004519 ... G3ECR1 41702403
    984708 9h2m:A (3.06) BS02 rna N/A GO:0004519 ... G3ECR1 41702403
    984709 9h2m:A (3.06) BS03 dna N/A GO:0004519 ... G3ECR1 41702403
    984710 9h2n:A (2.0) BS01 CU N/A GO:0016491 ... B2ZB02 N/A
    984711 9h2n:A (2.0) BS02 CU N/A GO:0016491 ... B2ZB02 N/A
    984712 9h2n:B (2.0) BS01 CU N/A GO:0016491 ... B2ZB02 N/A
    984713 9h2n:B (2.0) BS02 CU N/A GO:0016491 ... B2ZB02 N/A
    984714 9h2t:A (1.31) BS01 A1IR3 N/A GO:0003723 ... Q96MU7 N/A
    984715 9h2t:B (1.31) BS01 A1IR3 N/A GO:0003723 ... Q96MU7 N/A
    984716 9h2u:A (1.21) BS01 WPS N/A GO:0003723 ... Q96MU7 N/A
    984717 9h2u:A (1.21) BS02 WPS N/A GO:0003723 ... Q96MU7 N/A
    984718 9h2u:A (1.21) BS03 WPS N/A GO:0003723 ... Q96MU7 N/A
    984719 9h2u:B (1.21) BS01 WPS N/A GO:0003723 ... Q96MU7 N/A
    984720 9h2w:A (1.28) BS01 A1IR5 N/A GO:0003723 ... Q96MU7 N/A
    984721 9h2w:B (1.28) BS01 A1IR5 N/A GO:0003723 ... Q96MU7 N/A
    984722 9h2x:A (1.75) BS01 CLR N/A GO:0001609 ... P29274 40592852
    984723 9h2x:A (1.75) BS02 CLR N/A GO:0001609 ... P29274 40592852
    984724 9h2x:A (1.75) BS03 CLR N/A GO:0001609 ... P29274 40592852
    984725 9h2x:A (1.75) BS04 A1IR1 N/A GO:0001609 ... P29274 40592852
    984726 9h2y:A (1.24) BS01 A1IR4 N/A GO:0003723 ... Q96MU7 N/A
    984727 9h2y:A (1.24) BS02 A1IR4 N/A GO:0003723 ... Q96MU7 N/A
    984728 9h2y:B (1.24) BS01 A1IR4 N/A GO:0003723 ... Q96MU7 N/A
    984729 9h30:B (2.5) BS01 A1ISE N/A N/A P40337 N/A
    984730 9h31:A (2.2) BS01 GTP N/A GO:0000226 ... P81947 N/A
    984731 9h31:A (2.2) BS02 CA N/A GO:0000226 ... P81947 N/A
    984732 9h31:B (2.2) BS01 GDP N/A GO:0000226 ... Q6B856 N/A
    984733 9h31:C (2.2) BS01 GTP N/A GO:0000226 ... P81947 N/A
    984734 9h31:C (2.2) BS02 CA N/A GO:0000226 ... P81947 N/A
    984735 9h31:D (2.2) BS01 GDP N/A GO:0000226 ... Q6B856 N/A
    984736 9h31:D (2.2) BS02 A1ISE N/A GO:0000226 ... Q6B856 N/A
    984737 9h31:F (2.2) BS01 ACP N/A GO:0036211 ... N/A N/A
    984738 9h31:F (2.2) BS02 MG N/A GO:0036211 ... N/A N/A
    984739 9h32:A (2.31) BS01 GTP N/A GO:0000226 ... P81947 N/A
    984740 9h32:A (2.31) BS02 CA N/A GO:0000226 ... P81947 N/A
    984741 9h32:B (2.31) BS01 GDP N/A GO:0000226 ... Q6B856 N/A
    984742 9h32:C (2.31) BS01 GTP N/A GO:0000226 ... P81947 N/A
    984743 9h32:C (2.31) BS02 CA N/A GO:0000226 ... P81947 N/A
    984744 9h32:D (2.31) BS01 GDP N/A GO:0000226 ... Q6B856 N/A
    984745 9h32:D (2.31) BS02 A1ISD N/A GO:0000226 ... Q6B856 N/A
    984746 9h32:F (2.31) BS01 ACP N/A GO:0000226 ... A0A8V0Z8P0 N/A
    984747 9h32:F (2.31) BS02 MG N/A GO:0000226 ... A0A8V0Z8P0 N/A
    984748 9h33:A (2.3) BS01 GTP N/A GO:0000226 ... P81947 N/A
    984749 9h33:A (2.3) BS02 CA N/A GO:0000226 ... P81947 N/A
    984750 9h33:B (2.3) BS01 GDP N/A GO:0000226 ... Q6B856 N/A
    984751 9h33:C (2.3) BS01 GTP N/A GO:0000226 ... P81947 N/A
    984752 9h33:C (2.3) BS02 CA N/A GO:0000226 ... P81947 N/A
    984753 9h33:D (2.3) BS01 GDP N/A GO:0000226 ... Q6B856 N/A
    984754 9h33:D (2.3) BS02 A1ISC N/A GO:0000226 ... Q6B856 N/A
    984755 9h33:F (2.3) BS01 ACP N/A GO:0000226 ... A0A8V0Z8P0 N/A
    984756 9h33:F (2.3) BS02 MG N/A GO:0000226 ... A0A8V0Z8P0 N/A
    984757 9h34:A (2.3) BS01 GTP N/A GO:0000226 ... P81947 N/A
    984758 9h34:A (2.3) BS02 CA N/A GO:0000226 ... P81947 N/A
    984759 9h34:B (2.3) BS01 GDP N/A GO:0000226 ... Q6B856 N/A
    984760 9h34:C (2.3) BS01 GTP N/A GO:0000226 ... P81947 N/A
    984761 9h34:C (2.3) BS02 CA N/A GO:0000226 ... P81947 N/A
    984762 9h34:D (2.3) BS01 GDP N/A GO:0000226 ... Q6B856 N/A
    984763 9h34:D (2.3) BS02 A1ISB N/A GO:0000226 ... Q6B856 N/A
    984764 9h34:F (2.3) BS01 ACP N/A GO:0000226 ... A0A8V0Z8P0 N/A
    984765 9h34:F (2.3) BS02 MG N/A GO:0000226 ... A0A8V0Z8P0 N/A
    984766 9h37:A (1.715) BS01 CLR N/A GO:0001609 ... P29274 40592852
    984767 9h37:A (1.715) BS02 CLR N/A GO:0001609 ... P29274 40592852
    984768 9h37:A (1.715) BS03 A1IR0 N/A GO:0001609 ... P29274 40592852
    984769 9h39:A (1.66) BS01 FUC N/A N/A D3KU00 N/A
    984770 9h3b:A (2.58) BS01 FUC N/A GO:0019199 ... D3KTZ6 N/A
    984771 9h3c:A (2.9) BS01 A1IR7 N/A N/A N/A 41282371
    984772 9h3d:D (1.92) BS01 peptide N/A N/A A0A9X7GJJ5 39990323
    984773 9h3d:D (1.92) BS02 peptide N/A N/A A0A9X7GJJ5 39990323
    984774 9h3d:E (1.92) BS01 peptide N/A N/A A0A9X7GJJ5 39990323
    984775 9h3d:E (1.92) BS02 peptide N/A N/A A0A9X7GJJ5 39990323
    984776 9h3d:F (1.92) BS01 peptide N/A N/A A0A9X7GJJ5 39990323
    984777 9h3d:F (1.92) BS02 peptide N/A N/A A0A9X7GJJ5 39990323
    984778 9h3d:J (1.92) BS01 peptide N/A N/A A0A9X7GJJ5 39990323
    984779 9h3d:J (1.92) BS02 peptide N/A N/A A0A9X7GJJ5 39990323
    984780 9h3d:K (1.92) BS01 peptide N/A N/A A0A9X7GJJ5 39990323
    984781 9h3d:K (1.92) BS02 peptide N/A N/A A0A9X7GJJ5 39990323
    984782 9h3d:L (1.92) BS01 peptide N/A N/A A0A9X7GJJ5 39990323
    984783 9h3d:L (1.92) BS02 peptide N/A N/A A0A9X7GJJ5 39990323
    984784 9h3f:A (3.47) BS01 MG N/A GO:0000175 ... O07521 40421801
    984785 9h3f:A (3.47) BS02 MG N/A GO:0000175 ... O07521 40421801
    984786 9h3f:B (3.47) BS01 MG N/A GO:0000175 ... O07521 40421801
    984787 9h3f:B (3.47) BS02 MG N/A GO:0000175 ... O07521 40421801
    984788 9h3f:C (3.47) BS01 MG N/A GO:0000175 ... O07521 40421801
    984789 9h3f:C (3.47) BS02 MG N/A GO:0000175 ... O07521 40421801
    984790 9h3f:D (3.47) BS01 MG N/A GO:0000175 ... O07521 40421801
    984791 9h3f:D (3.47) BS02 MG N/A GO:0000175 ... O07521 40421801
    984792 9h3f:E (3.47) BS01 MG N/A GO:0000175 ... O07521 40421801
    984793 9h3f:E (3.47) BS02 MG N/A GO:0000175 ... O07521 40421801
    984794 9h3f:F (3.47) BS01 MG N/A GO:0000175 ... O07521 40421801
    984795 9h3f:F (3.47) BS02 MG N/A GO:0000175 ... O07521 40421801
    984796 9h3g:AA (1.82) BS01 rna N/A GO:0000325 ... Q9SIP7 41678627
    984797 9h3g:AB (1.82) BS01 rna N/A GO:0003729 ... Q9FLF0 41678627
    984798 9h3g:AC (1.82) BS01 rna N/A GO:0003729 ... Q93VB8 41678627
    984799 9h3g:AD (1.82) BS01 rna N/A GO:0000325 ... P51427 41678627
    984800 9h3g:AE (1.82) BS01 rna N/A GO:0000325 ... P42798 41678627

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).