SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    984801 9h3g:AF (1.82) BS01 rna N/A GO:0000462 ... Q9SK22 41678627
    984802 9h3g:AG (1.82) BS01 rna N/A GO:0000325 ... P41127 41678627
    984803 9h3g:AG (1.82) BS02 rna N/A GO:0000325 ... P41127 41678627
    984804 9h3g:AH (1.82) BS01 rna N/A GO:0000325 ... Q9T043 41678627
    984805 9h3g:AI (1.82) BS01 rna N/A GO:0003723 ... Q9SW09 41678627
    984806 9h3g:AJ (1.82) BS01 rna N/A GO:0002181 ... Q940B0 41678627
    984807 9h3g:AK (1.82) BS01 rna N/A GO:0003723 ... Q9SRX2 41678627
    984808 9h3g:AK (1.82) BS02 rna N/A GO:0003723 ... Q9SRX2 41678627
    984809 9h3g:AL (1.82) BS01 rna N/A GO:0003735 ... A0A1P8AY36 41678627
    984810 9h3g:AL (1.82) BS02 rna N/A GO:0003735 ... A0A1P8AY36 41678627
    984811 9h3g:AM (1.82) BS01 rna N/A GO:0003674 ... Q43291 41678627
    984812 9h3g:AM (1.82) BS02 rna N/A GO:0003674 ... Q43291 41678627
    984813 9h3g:AN (1.82) BS01 rna N/A GO:0002181 ... Q9M9W1 41678627
    984814 9h3g:AO (1.82) BS01 rna N/A GO:0002181 ... Q42347 41678627
    984815 9h3g:AP (1.82) BS01 rna N/A GO:0003729 ... P51419 41678627
    984816 9h3g:AQ (1.82) BS01 rna N/A GO:0003729 ... O82204 41678627
    984817 9h3g:AR (1.82) BS01 rna N/A N/A F4JC32 41678627
    984818 9h3g:AT (1.82) BS01 rna N/A GO:0003723 ... Q8VZ19 41678627
    984819 9h3g:AU (1.82) BS01 rna N/A GO:0002181 ... Q9STR1 41678627
    984820 9h3g:AV (1.82) BS01 rna N/A GO:0003729 ... P49211 41678627
    984821 9h3g:AW (1.82) BS01 rna N/A GO:0002181 ... Q9C912 41678627
    984822 9h3g:AX (1.82) BS01 rna N/A GO:0000325 ... Q9M352 41678627
    984823 9h3g:AY (1.82) BS01 rna N/A GO:0000448 ... Q8LFH7 41678627
    984824 9h3g:AY (1.82) BS02 rna N/A GO:0000448 ... Q8LFH7 41678627
    984825 9h3g:AY (1.82) BS03 ZN N/A GO:0000448 ... Q8LFH7 41678627
    984826 9h3g:AZ (1.82) BS01 rna N/A GO:0002181 ... O22860 41678627
    984827 9h3g:Aa (1.82) BS01 rna N/A GO:0002181 ... Q93VG5 41678627
    984828 9h3g:BA (1.82) BS01 rna N/A GO:0002181 ... P51424 41678627
    984829 9h3g:BA (1.82) BS02 rna N/A GO:0002181 ... P51424 41678627
    984830 9h3g:BB (1.82) BS01 rna N/A GO:0003729 ... Q9LZ17 41678627
    984831 9h3g:BD (1.82) BS01 rna N/A GO:0002181 ... O23290 41678627
    984832 9h3g:BD (1.82) BS02 rna N/A GO:0002181 ... O23290 41678627
    984833 9h3g:BD (1.82) BS03 ZN N/A GO:0002181 ... O23290 41678627
    984834 9h3g:BE (1.82) BS01 rna N/A GO:0003674 ... Q8RXU5 41678627
    984835 9h3g:BE (1.82) BS02 rna N/A GO:0003674 ... Q8RXU5 41678627
    984836 9h3g:BE (1.82) BS03 ZN N/A GO:0003674 ... Q8RXU5 41678627
    984837 9h3g:BF (1.82) BS01 rna N/A GO:0002181 ... Q9C9C6 41678627
    984838 9h3g:BG (1.82) BS01 rna N/A GO:0000325 ... Q9LZH9 41678627
    984839 9h3g:BG (1.82) BS02 rna N/A GO:0000325 ... Q9LZH9 41678627
    984840 9h3g:BH (1.82) BS01 rna N/A GO:0003729 ... Q9LRX8 41678627
    984841 9h3g:BI (1.82) BS01 rna N/A GO:0003729 ... P49690 41678627
    984842 9h3g:BI (1.82) BS02 rna N/A GO:0003729 ... P49690 41678627
    984843 9h3g:BJ (1.82) BS01 rna N/A GO:0003735 ... Q08770 41678627
    984844 9h3g:BJ (1.82) BS02 rna N/A GO:0003735 ... Q08770 41678627
    984845 9h3g:BJ (1.82) BS03 rna N/A GO:0003735 ... Q08770 41678627
    984846 9h3g:BK (1.82) BS01 rna N/A GO:0000027 ... Q8LBI1 41678627
    984847 9h3g:BK (1.82) BS02 rna N/A GO:0000027 ... Q8LBI1 41678627
    984848 9h3g:BL (1.82) BS01 rna N/A GO:0000325 ... Q9FNP8 41678627
    984849 9h3g:BM (1.82) BS01 rna N/A GO:0000325 ... Q93VI3 41678627
    984850 9h3g:BM (1.82) BS02 rna N/A GO:0000325 ... Q93VI3 41678627
    984851 9h3g:BN (1.82) BS01 rna N/A GO:0003729 ... Q9M3C3 41678627
    984852 9h3g:BN (1.82) BS02 rna N/A GO:0003729 ... Q9M3C3 41678627
    984853 9h3g:BO (1.82) BS01 rna N/A GO:0000325 ... P51414 41678627
    984854 9h3g:BO (1.82) BS02 rna N/A GO:0000325 ... P51414 41678627
    984855 9h3g:BP (1.82) BS01 rna N/A GO:0000463 ... Q9M3D2 41678627
    984856 9h3g:BP (1.82) BS02 rna N/A GO:0000463 ... Q9M3D2 41678627
    984857 9h3g:BQ (1.82) BS01 rna N/A GO:0000325 ... P46286 41678627
    984858 9h3g:BQ (1.82) BS02 rna N/A GO:0000325 ... P46286 41678627
    984859 9h3g:BR (1.82) BS01 rna N/A GO:0003735 ... F4IT48 41678627
    984860 9h3g:BR (1.82) BS02 rna N/A GO:0003735 ... F4IT48 41678627
    984861 9h3g:BR (1.82) BS03 MG N/A GO:0003735 ... F4IT48 41678627
    984862 9h3g:BS (1.82) BS01 rna N/A GO:0000325 ... P17094 41678627
    984863 9h3g:BT (1.82) BS01 rna N/A GO:0003723 ... Q9SF40 41678627
    984864 9h3g:BT (1.82) BS02 rna N/A GO:0003723 ... Q9SF40 41678627
    984865 9h3g:BU (1.82) BS01 rna N/A GO:0003723 ... P42795 41678627
    984866 9h3g:BU (1.82) BS02 rna N/A GO:0003723 ... P42795 41678627
    984867 9h3g:BV (1.82) BS01 rna N/A GO:0003729 ... Q42262 41678627
    984868 9h3g:BW (1.82) BS01 rna N/A GO:0000447 ... Q3E902 41678627
    984869 9h3g:Ba (1.82) BS01 rna N/A GO:0003729 ... Q9STY6 41678627
    984870 9h3g:Ca (1.82) BS01 rna N/A GO:0002181 ... Q680P8 41678627
    984871 9h3g:Ca (1.82) BS02 ZN N/A GO:0002181 ... Q680P8 41678627
    984872 9h3g:Da (1.82) BS01 rna N/A GO:0000462 ... P59224 41678627
    984873 9h3g:Da (1.82) BS02 rna N/A GO:0000462 ... P59224 41678627
    984874 9h3g:Ea (1.82) BS01 rna N/A GO:0000325 ... O23515 41678627
    984875 9h3g:Ea (1.82) BS02 rna N/A GO:0000325 ... O23515 41678627
    984876 9h3g:Fa (1.82) BS01 rna N/A GO:0003729 ... Q42351 41678627
    984877 9h3g:Ga (1.82) BS01 rna N/A GO:0003729 ... B9DHA6 41678627
    984878 9h3g:Ga (1.82) BS02 ZN N/A GO:0003729 ... B9DHA6 41678627
    984879 9h3g:Ha (1.82) BS01 rna N/A GO:0003729 ... P49637 41678627
    984880 9h3g:Ia (1.82) BS01 rna N/A GO:0000325 ... P49209 41678627
    984881 9h3g:Ja (1.82) BS01 rna N/A GO:0003735 ... Q8VYK6 41678627
    984882 9h3g:Ka (1.82) BS01 rna N/A GO:0002181 ... Q8LC83 41678627
    984883 9h3g:La (1.82) BS01 rna N/A GO:0003729 ... Q9T029 41678627
    984884 9h3g:Ma (1.82) BS01 rna N/A GO:0003729 ... P49206 41678627
    984885 9h3g:Ma (1.82) BS02 ZN N/A GO:0003729 ... P49206 41678627
    984886 9h3g:Na (1.82) BS01 rna N/A GO:0003729 ... Q9M2F1 41678627
    984887 9h3g:Oa (1.82) BS01 rna N/A GO:0000028 ... P34789 41678627
    984888 9h3g:Pa (1.82) BS01 rna N/A GO:0003729 ... P49689 41678627
    984889 9h3g:Ra (1.82) BS01 rna N/A GO:0003729 ... Q8LD03 41678627
    984890 9h3g:Ta (1.82) BS01 rna N/A GO:0003729 ... P51430 41678627
    984891 9h3g:Ua (1.82) BS01 rna N/A GO:0000028 ... Q9CAX6 41678627
    984892 9h3g:Va (1.82) BS01 rna N/A GO:0003729 ... P49201 41678627
    984893 9h3g:Wa (1.82) BS01 rna N/A GO:0000325 ... P34788 41678627
    984894 9h3g:Wa (1.82) BS02 MG N/A GO:0000325 ... P34788 41678627
    984895 9h3g:Xa (1.82) BS01 rna N/A GO:0003729 ... P16181 41678627
    984896 9h3g:Ya (1.82) BS01 rna N/A GO:0003735 ... Q9FY65 41678627
    984897 9h3g:Ya (1.82) BS02 rna N/A GO:0003735 ... Q9FY65 41678627
    984898 9h3g:Za (1.82) BS01 rna N/A GO:0000028 ... Q08682 41678627
    984899 9h3h:A (1.8) BS01 ZN N/A GO:0004064 ... P00918 39572886
    984900 9h3k:D (6.62) BS01 rna N/A GO:0000027 ... P60438 39794318
    984901 9h3k:E (6.62) BS01 rna N/A GO:0001070 ... P60723 39794318
    984902 9h3k:J (6.62) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    984903 9h3k:L (6.62) BS01 rna N/A GO:0002181 ... P02413 39794318
    984904 9h3k:N (6.62) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    984905 9h3k:Q (6.62) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    984906 9h3k:R (6.62) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    984907 9h3k:U (6.62) BS01 rna N/A GO:0000027 ... P60624 39794318
    984908 9h3l:D (5.84) BS01 rna N/A GO:0000027 ... P60438 39794318
    984909 9h3l:E (5.84) BS01 rna N/A GO:0001070 ... P60723 39794318
    984910 9h3l:G (5.84) BS01 rna N/A GO:0000027 ... P0AG55 39794318
    984911 9h3l:J (5.84) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    984912 9h3l:K (5.84) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    984913 9h3l:L (5.84) BS01 rna N/A GO:0002181 ... P02413 39794318
    984914 9h3l:N (5.84) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    984915 9h3l:P (5.84) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    984916 9h3l:Q (5.84) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    984917 9h3l:R (5.84) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    984918 9h3l:U (5.84) BS01 rna N/A GO:0000027 ... P60624 39794318
    984919 9h3l:Z (5.84) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    984920 9h3m:2 (4.41) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    984921 9h3m:D (4.41) BS01 rna N/A GO:0000027 ... P60438 39794318
    984922 9h3m:E (4.41) BS01 rna N/A GO:0001070 ... P60723 39794318
    984923 9h3m:J (4.41) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    984924 9h3m:K (4.41) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    984925 9h3m:L (4.41) BS01 rna N/A GO:0002181 ... P02413 39794318
    984926 9h3m:N (4.41) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    984927 9h3m:P (4.41) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    984928 9h3m:Q (4.41) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    984929 9h3m:R (4.41) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    984930 9h3m:T (4.41) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    984931 9h3m:U (4.41) BS01 rna N/A GO:0000027 ... P60624 39794318
    984932 9h3m:Y (4.41) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    984933 9h3n:2 (3.69) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    984934 9h3n:D (3.69) BS01 rna N/A GO:0000027 ... P60438 39794318
    984935 9h3n:E (3.69) BS01 rna N/A GO:0001070 ... P60723 39794318
    984936 9h3n:J (3.69) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    984937 9h3n:L (3.69) BS01 rna N/A GO:0002181 ... P02413 39794318
    984938 9h3n:N (3.69) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    984939 9h3n:Q (3.69) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    984940 9h3n:R (3.69) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    984941 9h3n:T (3.69) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    984942 9h3n:U (3.69) BS01 rna N/A GO:0000027 ... P60624 39794318
    984943 9h3n:Y (3.69) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    984944 9h3n:Z (3.69) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    984945 9h3o:2 (4.54) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    984946 9h3o:4 (4.54) BS01 rna N/A GO:0002181 ... P0A7Q6 39794318
    984947 9h3o:D (4.54) BS01 rna N/A GO:0000027 ... P60438 39794318
    984948 9h3o:E (4.54) BS01 rna N/A GO:0001070 ... P60723 39794318
    984949 9h3o:G (4.54) BS01 rna N/A GO:0000027 ... P0AG55 39794318
    984950 9h3o:J (4.54) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    984951 9h3o:K (4.54) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    984952 9h3o:L (4.54) BS01 rna N/A GO:0002181 ... P02413 39794318
    984953 9h3o:N (4.54) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    984954 9h3o:P (4.54) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    984955 9h3o:Q (4.54) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    984956 9h3o:R (4.54) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    984957 9h3o:T (4.54) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    984958 9h3o:U (4.54) BS01 rna N/A GO:0000027 ... P60624 39794318
    984959 9h3o:Y (4.54) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    984960 9h3o:Z (4.54) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    984961 9h3p:2 (7.06) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    984962 9h3p:D (7.06) BS01 rna N/A GO:0000027 ... P60438 39794318
    984963 9h3p:E (7.06) BS01 rna N/A GO:0001070 ... P60723 39794318
    984964 9h3p:F (7.06) BS01 rna N/A GO:0000027 ... P62399 39794318
    984965 9h3p:F (7.06) BS02 rna N/A GO:0000027 ... P62399 39794318
    984966 9h3p:G (7.06) BS01 rna N/A GO:0000027 ... P0AG55 39794318
    984967 9h3p:J (7.06) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    984968 9h3p:K (7.06) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    984969 9h3p:L (7.06) BS01 rna N/A GO:0002181 ... P02413 39794318
    984970 9h3p:N (7.06) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    984971 9h3p:O (7.06) BS01 rna N/A GO:0002181 ... P0C018 39794318
    984972 9h3p:O (7.06) BS02 rna N/A GO:0002181 ... P0C018 39794318
    984973 9h3p:P (7.06) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    984974 9h3p:Q (7.06) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    984975 9h3p:R (7.06) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    984976 9h3p:T (7.06) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    984977 9h3p:U (7.06) BS01 rna N/A GO:0000027 ... P60624 39794318
    984978 9h3p:V (7.06) BS01 rna N/A GO:0000027 ... P68919 39794318
    984979 9h3p:W (7.06) BS01 rna N/A GO:0003735 ... P0A7L8 39794318
    984980 9h3p:W (7.06) BS02 rna N/A GO:0003735 ... P0A7L8 39794318
    984981 9h3p:X (7.06) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    984982 9h3p:Y (7.06) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    984983 9h3p:Z (7.06) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    984984 9h3p:Z (7.06) BS02 rna N/A GO:0000027 ... P0AG51 39794318
    984985 9h3q:2 (4.02) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    984986 9h3q:4 (4.02) BS01 rna N/A GO:0002181 ... P0A7Q6 39794318
    984987 9h3q:C (4.02) BS01 rna N/A GO:0005737 ... P0A8X0 39794318
    984988 9h3q:D (4.02) BS01 rna N/A GO:0000027 ... P60438 39794318
    984989 9h3q:E (4.02) BS01 rna N/A GO:0001070 ... P60723 39794318
    984990 9h3q:F (4.02) BS01 rna N/A GO:0000027 ... P62399 39794318
    984991 9h3q:F (4.02) BS02 rna N/A GO:0000027 ... P62399 39794318
    984992 9h3q:G (4.02) BS01 rna N/A GO:0000027 ... P0AG55 39794318
    984993 9h3q:H (4.02) BS01 rna N/A GO:0002181 ... P0A7R1 39794318
    984994 9h3q:J (4.02) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    984995 9h3q:L (4.02) BS01 rna N/A GO:0002181 ... P02413 39794318
    984996 9h3q:N (4.02) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    984997 9h3q:O (4.02) BS01 rna N/A GO:0002181 ... P0C018 39794318
    984998 9h3q:O (4.02) BS02 rna N/A GO:0002181 ... P0C018 39794318
    984999 9h3q:Q (4.02) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    985000 9h3q:R (4.02) BS01 rna N/A GO:0002181 ... P0AG48 39794318

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).