SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    985001 9h3q:T (4.02) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    985002 9h3q:U (4.02) BS01 rna N/A GO:0000027 ... P60624 39794318
    985003 9h3q:V (4.02) BS01 rna N/A GO:0000027 ... P68919 39794318
    985004 9h3q:W (4.02) BS01 rna N/A GO:0003735 ... P0A7L8 39794318
    985005 9h3q:W (4.02) BS02 rna N/A GO:0003735 ... P0A7L8 39794318
    985006 9h3q:X (4.02) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    985007 9h3q:Y (4.02) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    985008 9h3q:Z (4.02) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    985009 9h3q:Z (4.02) BS02 rna N/A GO:0000027 ... P0AG51 39794318
    985010 9h3r:2 (4.12) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    985011 9h3r:4 (4.12) BS01 rna N/A GO:0002181 ... P0A7Q6 39794318
    985012 9h3r:C (4.12) BS01 rna N/A GO:0005737 ... P0A8X0 39794318
    985013 9h3r:D (4.12) BS01 rna N/A GO:0000027 ... P60438 39794318
    985014 9h3r:E (4.12) BS01 rna N/A GO:0001070 ... P60723 39794318
    985015 9h3r:F (4.12) BS01 rna N/A GO:0000027 ... P62399 39794318
    985016 9h3r:F (4.12) BS02 rna N/A GO:0000027 ... P62399 39794318
    985017 9h3r:G (4.12) BS01 rna N/A GO:0000027 ... P0AG55 39794318
    985018 9h3r:H (4.12) BS01 rna N/A GO:0002181 ... P0A7R1 39794318
    985019 9h3r:J (4.12) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    985020 9h3r:K (4.12) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    985021 9h3r:L (4.12) BS01 rna N/A GO:0002181 ... P02413 39794318
    985022 9h3r:N (4.12) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    985023 9h3r:O (4.12) BS01 rna N/A GO:0002181 ... P0C018 39794318
    985024 9h3r:O (4.12) BS02 rna N/A GO:0002181 ... P0C018 39794318
    985025 9h3r:P (4.12) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    985026 9h3r:Q (4.12) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    985027 9h3r:R (4.12) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    985028 9h3r:T (4.12) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    985029 9h3r:U (4.12) BS01 rna N/A GO:0000027 ... P60624 39794318
    985030 9h3r:V (4.12) BS01 rna N/A GO:0000027 ... P68919 39794318
    985031 9h3r:W (4.12) BS01 rna N/A GO:0003735 ... P0A7L8 39794318
    985032 9h3r:W (4.12) BS02 rna N/A GO:0003735 ... P0A7L8 39794318
    985033 9h3r:X (4.12) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    985034 9h3r:Y (4.12) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    985035 9h3r:Z (4.12) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    985036 9h3s:0 (4.16) BS01 rna N/A GO:0000027 ... P0A7N4 39794318
    985037 9h3s:2 (4.16) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    985038 9h3s:4 (4.16) BS01 rna N/A GO:0002181 ... P0A7Q6 39794318
    985039 9h3s:C (4.16) BS01 rna N/A GO:0005737 ... P0A8X0 39794318
    985040 9h3s:D (4.16) BS01 rna N/A GO:0000027 ... P60438 39794318
    985041 9h3s:E (4.16) BS01 rna N/A GO:0001070 ... P60723 39794318
    985042 9h3s:F (4.16) BS01 rna N/A GO:0000027 ... P62399 39794318
    985043 9h3s:F (4.16) BS02 rna N/A GO:0000027 ... P62399 39794318
    985044 9h3s:G (4.16) BS01 rna N/A GO:0000027 ... P0AG55 39794318
    985045 9h3s:H (4.16) BS01 rna N/A GO:0002181 ... P0A7R1 39794318
    985046 9h3s:J (4.16) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    985047 9h3s:K (4.16) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    985048 9h3s:L (4.16) BS01 rna N/A GO:0002181 ... P02413 39794318
    985049 9h3s:N (4.16) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    985050 9h3s:O (4.16) BS01 rna N/A GO:0002181 ... P0C018 39794318
    985051 9h3s:O (4.16) BS02 rna N/A GO:0002181 ... P0C018 39794318
    985052 9h3s:P (4.16) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    985053 9h3s:Q (4.16) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    985054 9h3s:R (4.16) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    985055 9h3s:S (4.16) BS01 rna N/A GO:0002181 ... P61175 39794318
    985056 9h3s:T (4.16) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    985057 9h3s:U (4.16) BS01 rna N/A GO:0000027 ... P60624 39794318
    985058 9h3s:V (4.16) BS01 rna N/A GO:0000027 ... P68919 39794318
    985059 9h3s:W (4.16) BS01 rna N/A GO:0003735 ... P0A7L8 39794318
    985060 9h3s:W (4.16) BS02 rna N/A GO:0003735 ... P0A7L8 39794318
    985061 9h3s:X (4.16) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    985062 9h3s:Y (4.16) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    985063 9h3s:Z (4.16) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    985064 9h3s:Z (4.16) BS02 rna N/A GO:0000027 ... P0AG51 39794318
    985065 9h3t:0 (3.85) BS01 rna N/A GO:0000027 ... P0A7N4 39794318
    985066 9h3t:2 (3.85) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    985067 9h3t:C (3.85) BS01 rna N/A GO:0000027 ... P60422 39794318
    985068 9h3t:D (3.85) BS01 rna N/A GO:0000027 ... P60438 39794318
    985069 9h3t:E (3.85) BS01 rna N/A GO:0001070 ... P60723 39794318
    985070 9h3t:H (3.85) BS01 rna N/A GO:0002181 ... P0A7R1 39794318
    985071 9h3t:J (3.85) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    985072 9h3t:K (3.85) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    985073 9h3t:L (3.85) BS01 rna N/A GO:0002181 ... P02413 39794318
    985074 9h3t:N (3.85) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    985075 9h3t:P (3.85) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    985076 9h3t:Q (3.85) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    985077 9h3t:R (3.85) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    985078 9h3t:S (3.85) BS01 rna N/A GO:0002181 ... P61175 39794318
    985079 9h3t:T (3.85) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    985080 9h3t:U (3.85) BS01 rna N/A GO:0000027 ... P60624 39794318
    985081 9h3t:X (3.85) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    985082 9h3t:Y (3.85) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    985083 9h3t:Z (3.85) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    985084 9h3u:0 (3.47) BS01 rna N/A GO:0000027 ... P0A7N4 39794318
    985085 9h3u:2 (3.47) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    985086 9h3u:C (3.47) BS01 rna N/A GO:0000027 ... P60422 39794318
    985087 9h3u:D (3.47) BS01 rna N/A GO:0000027 ... P60438 39794318
    985088 9h3u:E (3.47) BS01 rna N/A GO:0001070 ... P60723 39794318
    985089 9h3u:H (3.47) BS01 rna N/A GO:0002181 ... P0A7R1 39794318
    985090 9h3u:J (3.47) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    985091 9h3u:K (3.47) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    985092 9h3u:L (3.47) BS01 rna N/A GO:0002181 ... P02413 39794318
    985093 9h3u:N (3.47) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    985094 9h3u:P (3.47) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    985095 9h3u:Q (3.47) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    985096 9h3u:R (3.47) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    985097 9h3u:S (3.47) BS01 rna N/A GO:0002181 ... P61175 39794318
    985098 9h3u:T (3.47) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    985099 9h3u:U (3.47) BS01 rna N/A GO:0000027 ... P60624 39794318
    985100 9h3u:X (3.47) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    985101 9h3u:Y (3.47) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    985102 9h3u:Z (3.47) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    985103 9h3v:0 (3.55) BS01 rna N/A GO:0000027 ... P0A7N4 39794318
    985104 9h3v:2 (3.55) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    985105 9h3v:C (3.55) BS01 rna N/A GO:0000027 ... P60422 39794318
    985106 9h3v:D (3.55) BS01 rna N/A GO:0000027 ... P60438 39794318
    985107 9h3v:E (3.55) BS01 rna N/A GO:0001070 ... P60723 39794318
    985108 9h3v:F (3.55) BS01 rna N/A GO:0000027 ... P62399 39794318
    985109 9h3v:F (3.55) BS02 rna N/A GO:0000027 ... P62399 39794318
    985110 9h3v:H (3.55) BS01 rna N/A GO:0002181 ... P0A7R1 39794318
    985111 9h3v:J (3.55) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    985112 9h3v:K (3.55) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    985113 9h3v:L (3.55) BS01 rna N/A GO:0002181 ... P02413 39794318
    985114 9h3v:N (3.55) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    985115 9h3v:O (3.55) BS01 rna N/A GO:0002181 ... P0C018 39794318
    985116 9h3v:O (3.55) BS02 rna N/A GO:0002181 ... P0C018 39794318
    985117 9h3v:P (3.55) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    985118 9h3v:Q (3.55) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    985119 9h3v:R (3.55) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    985120 9h3v:S (3.55) BS01 rna N/A GO:0002181 ... P61175 39794318
    985121 9h3v:T (3.55) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    985122 9h3v:U (3.55) BS01 rna N/A GO:0000027 ... P60624 39794318
    985123 9h3v:V (3.55) BS01 rna N/A GO:0000027 ... P68919 39794318
    985124 9h3v:W (3.55) BS01 rna N/A GO:0003735 ... P0A7L8 39794318
    985125 9h3v:W (3.55) BS02 rna N/A GO:0003735 ... P0A7L8 39794318
    985126 9h3v:X (3.55) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    985127 9h3v:Y (3.55) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    985128 9h3v:Z (3.55) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    985129 9h3v:Z (3.55) BS02 rna N/A GO:0000027 ... P0AG51 39794318
    985130 9h3w:0 (5.38) BS01 rna N/A GO:0000027 ... P0A7N4 39794318
    985131 9h3w:2 (5.38) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    985132 9h3w:C (5.38) BS01 rna N/A GO:0000027 ... P60422 39794318
    985133 9h3w:D (5.38) BS01 rna N/A GO:0000027 ... P60438 39794318
    985134 9h3w:E (5.38) BS01 rna N/A GO:0001070 ... P60723 39794318
    985135 9h3w:F (5.38) BS01 rna N/A GO:0000027 ... P62399 39794318
    985136 9h3w:F (5.38) BS02 rna N/A GO:0000027 ... P62399 39794318
    985137 9h3w:H (5.38) BS01 rna N/A GO:0002181 ... P0A7R1 39794318
    985138 9h3w:J (5.38) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    985139 9h3w:K (5.38) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    985140 9h3w:L (5.38) BS01 rna N/A GO:0002181 ... P02413 39794318
    985141 9h3w:N (5.38) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    985142 9h3w:O (5.38) BS01 rna N/A GO:0002181 ... P0C018 39794318
    985143 9h3w:O (5.38) BS02 rna N/A GO:0002181 ... P0C018 39794318
    985144 9h3w:P (5.38) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    985145 9h3w:Q (5.38) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    985146 9h3w:R (5.38) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    985147 9h3w:S (5.38) BS01 rna N/A GO:0002181 ... P61175 39794318
    985148 9h3w:T (5.38) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    985149 9h3w:U (5.38) BS01 rna N/A GO:0000027 ... P60624 39794318
    985150 9h3w:V (5.38) BS01 rna N/A GO:0000027 ... P68919 39794318
    985151 9h3w:V (5.38) BS02 rna N/A GO:0000027 ... P68919 39794318
    985152 9h3w:W (5.38) BS01 rna N/A GO:0003735 ... P0A7L8 39794318
    985153 9h3w:W (5.38) BS02 rna N/A GO:0003735 ... P0A7L8 39794318
    985154 9h3w:X (5.38) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    985155 9h3w:Y (5.38) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    985156 9h3w:Z (5.38) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    985157 9h3x:0 (4.12) BS01 rna N/A GO:0000027 ... P0A7N4 39794318
    985158 9h3x:1 (4.12) BS01 rna N/A GO:0000027 ... P0A7N9 39794318
    985159 9h3x:2 (4.12) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    985160 9h3x:3 (4.12) BS01 rna N/A GO:0002181 ... P0A7Q1 39794318
    985161 9h3x:C (4.12) BS01 rna N/A GO:0000027 ... P60422 39794318
    985162 9h3x:D (4.12) BS01 rna N/A GO:0000027 ... P60438 39794318
    985163 9h3x:E (4.12) BS01 rna N/A GO:0001070 ... P60723 39794318
    985164 9h3x:F (4.12) BS01 rna N/A GO:0000027 ... P62399 39794318
    985165 9h3x:F (4.12) BS02 rna N/A GO:0000027 ... P62399 39794318
    985166 9h3x:H (4.12) BS01 rna N/A GO:0002181 ... P0A7R1 39794318
    985167 9h3x:J (4.12) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    985168 9h3x:K (4.12) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    985169 9h3x:L (4.12) BS01 rna N/A GO:0002181 ... P02413 39794318
    985170 9h3x:N (4.12) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    985171 9h3x:O (4.12) BS01 rna N/A GO:0002181 ... P0C018 39794318
    985172 9h3x:O (4.12) BS02 rna N/A GO:0002181 ... P0C018 39794318
    985173 9h3x:P (4.12) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    985174 9h3x:Q (4.12) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    985175 9h3x:R (4.12) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    985176 9h3x:S (4.12) BS01 rna N/A GO:0002181 ... P61175 39794318
    985177 9h3x:T (4.12) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    985178 9h3x:U (4.12) BS01 rna N/A GO:0000027 ... P60624 39794318
    985179 9h3x:V (4.12) BS01 rna N/A GO:0000027 ... P68919 39794318
    985180 9h3x:W (4.12) BS01 rna N/A GO:0003735 ... P0A7L8 39794318
    985181 9h3x:W (4.12) BS02 rna N/A GO:0003735 ... P0A7L8 39794318
    985182 9h3x:X (4.12) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    985183 9h3x:Y (4.12) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    985184 9h3x:Z (4.12) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    985185 9h3y:0 (3.09) BS01 rna N/A GO:0000027 ... P0A7N4 39794318
    985186 9h3y:2 (3.09) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    985187 9h3y:3 (3.09) BS01 rna N/A GO:0002181 ... P0A7Q1 39794318
    985188 9h3y:4 (3.09) BS01 rna N/A GO:0002181 ... P0A7Q6 39794318
    985189 9h3y:C (3.09) BS01 rna N/A GO:0000027 ... P60422 39794318
    985190 9h3y:D (3.09) BS01 rna N/A GO:0000027 ... P60438 39794318
    985191 9h3y:E (3.09) BS01 rna N/A GO:0001070 ... P60723 39794318
    985192 9h3y:F (3.09) BS01 rna N/A GO:0000027 ... P62399 39794318
    985193 9h3y:F (3.09) BS02 rna N/A GO:0000027 ... P62399 39794318
    985194 9h3y:G (3.09) BS01 rna N/A GO:0000027 ... P0AG55 39794318
    985195 9h3y:H (3.09) BS01 rna N/A GO:0002181 ... P0A7R1 39794318
    985196 9h3y:J (3.09) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    985197 9h3y:K (3.09) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    985198 9h3y:L (3.09) BS01 rna N/A GO:0002181 ... P02413 39794318
    985199 9h3y:N (3.09) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    985200 9h3y:O (3.09) BS01 rna N/A GO:0002181 ... P0C018 39794318

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).