SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    985201 9h3y:O (3.09) BS02 rna N/A GO:0002181 ... P0C018 39794318
    985202 9h3y:P (3.09) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    985203 9h3y:Q (3.09) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    985204 9h3y:R (3.09) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    985205 9h3y:S (3.09) BS01 rna N/A GO:0002181 ... P61175 39794318
    985206 9h3y:T (3.09) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    985207 9h3y:U (3.09) BS01 rna N/A GO:0000027 ... P60624 39794318
    985208 9h3y:V (3.09) BS01 rna N/A GO:0000027 ... P68919 39794318
    985209 9h3y:W (3.09) BS01 rna N/A GO:0003735 ... P0A7L8 39794318
    985210 9h3y:X (3.09) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    985211 9h3y:Y (3.09) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    985212 9h3y:Z (3.09) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    985213 9h3z:0 (2.98) BS01 rna N/A GO:0000027 ... P0A7N4 39794318
    985214 9h3z:1 (2.98) BS01 rna N/A GO:0000027 ... P0A7N9 39794318
    985215 9h3z:2 (2.98) BS01 rna N/A GO:0002181 ... P0A7P5 39794318
    985216 9h3z:3 (2.98) BS01 rna N/A GO:0002181 ... P0A7Q1 39794318
    985217 9h3z:4 (2.98) BS01 rna N/A GO:0002181 ... P0A7Q6 39794318
    985218 9h3z:C (2.98) BS01 rna N/A GO:0000027 ... P60422 39794318
    985219 9h3z:D (2.98) BS01 rna N/A GO:0000027 ... P60438 39794318
    985220 9h3z:E (2.98) BS01 rna N/A GO:0001070 ... P60723 39794318
    985221 9h3z:F (2.98) BS01 rna N/A GO:0000027 ... P62399 39794318
    985222 9h3z:F (2.98) BS02 rna N/A GO:0000027 ... P62399 39794318
    985223 9h3z:G (2.98) BS01 rna N/A GO:0000027 ... P0AG55 39794318
    985224 9h3z:H (2.98) BS01 rna N/A GO:0002181 ... P0A7R1 39794318
    985225 9h3z:J (2.98) BS01 rna N/A GO:0002181 ... P0AA10 39794318
    985226 9h3z:K (2.98) BS01 rna N/A GO:0002181 ... P0ADY3 39794318
    985227 9h3z:L (2.98) BS01 rna N/A GO:0002181 ... P02413 39794318
    985228 9h3z:M (2.98) BS01 rna N/A GO:0000027 ... P0ADY7 39794318
    985229 9h3z:M (2.98) BS02 rna N/A GO:0000027 ... P0ADY7 39794318
    985230 9h3z:N (2.98) BS01 rna N/A GO:0000027 ... P0AG44 39794318
    985231 9h3z:O (2.98) BS01 rna N/A GO:0002181 ... P0C018 39794318
    985232 9h3z:O (2.98) BS02 rna N/A GO:0002181 ... P0C018 39794318
    985233 9h3z:P (2.98) BS01 rna N/A GO:0000027 ... P0A7K6 39794318
    985234 9h3z:Q (2.98) BS01 rna N/A GO:0000027 ... P0A7L3 39794318
    985235 9h3z:R (2.98) BS01 rna N/A GO:0002181 ... P0AG48 39794318
    985236 9h3z:S (2.98) BS01 rna N/A GO:0002181 ... P61175 39794318
    985237 9h3z:T (2.98) BS01 rna N/A GO:0000027 ... P0ADZ0 39794318
    985238 9h3z:U (2.98) BS01 rna N/A GO:0000027 ... P60624 39794318
    985239 9h3z:V (2.98) BS01 rna N/A GO:0000027 ... P68919 39794318
    985240 9h3z:V (2.98) BS02 rna N/A GO:0000027 ... P68919 39794318
    985241 9h3z:W (2.98) BS01 rna N/A GO:0003735 ... P0A7L8 39794318
    985242 9h3z:W (2.98) BS02 rna N/A GO:0003735 ... P0A7L8 39794318
    985243 9h3z:X (2.98) BS01 rna N/A GO:0000027 ... P0A7M2 39794318
    985244 9h3z:Y (2.98) BS01 rna N/A GO:0000027 ... P0A7M6 39794318
    985245 9h3z:Z (2.98) BS01 rna N/A GO:0000027 ... P0AG51 39794318
    985246 9h3z:Z (2.98) BS02 rna N/A GO:0000027 ... P0AG51 39794318
    985247 9h40:A (1.8) BS01 ALA N/A GO:0003824 ... A0A6I3XBB3 39613284
    985248 9h40:A (1.8) BS02 FAD N/A GO:0003824 ... A0A6I3XBB3 39613284
    985249 9h40:C (1.8) BS01 GLY N/A GO:0003824 ... A0A6I3XBB3 39613284
    985250 9h40:C (1.8) BS02 FAD N/A GO:0003824 ... A0A6I3XBB3 39613284
    985251 9h42:A (2.601) BS01 A1IR8 N/A N/A P00533 41432179
    985252 9h44:A (1.74) BS01 O4B N/A N/A O94953 N/A
    985253 9h45:A (2.08) BS01 rna N/A GO:0000049 ... P0A6X3 39868539
    985254 9h45:B (2.08) BS01 rna N/A GO:0000049 ... P0A6X3 39868539
    985255 9h45:C (2.08) BS01 rna N/A GO:0000049 ... P0A6X3 39868539
    985256 9h45:D (2.08) BS01 rna N/A GO:0000049 ... P0A6X3 39868539
    985257 9h45:E (2.08) BS01 rna N/A GO:0000049 ... P0A6X3 39868539
    985258 9h45:F (2.08) BS01 rna N/A GO:0000049 ... P0A6X3 39868539
    985259 9h46:A (3.163) BS01 A1ISA N/A GO:0004672 ... P00533 41432179
    985260 9h47:A (2.991) BS01 A1IR9 N/A N/A P00533 41432179
    985261 9h49:A (3.52) BS01 NH3 N/A GO:0005506 ... P02787 39711171
    985262 9h4b:A (1.9) BS01 A1ISK N/A GO:0008233 ... P0DTD1 N/A
    985263 9h4c:A (1.98) BS01 MH0 N/A N/A N/A N/A
    985264 9h4c:A (1.98) BS02 MH0 N/A N/A N/A N/A
    985265 9h4d:A (2.117) BS01 A1ISH N/A GO:0002225 ... Q16552 39715021
    985266 9h4d:B (2.117) BS01 A1ISH N/A GO:0002225 ... Q16552 39715021
    985267 9h4e:B (2.35) BS01 MG N/A GO:0003824 ... A0A0U2UYC4 40045995
    985268 9h4f:A (2.77) BS01 NAP N/A GO:0000785 ... A0ACD6BA29 40244857
    985269 9h4f:B (2.77) BS01 NAP N/A GO:0000785 ... A0ACD6BA29 40244857
    985270 9h4g:C (3.13) BS01 TRA N/A GO:0003824 ... A0A0U2UYC4 40045995
    985271 9h4i:A (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985272 9h4i:B (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985273 9h4i:C (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985274 9h4i:D (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985275 9h4i:E (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985276 9h4i:F (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985277 9h4i:G (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985278 9h4i:H (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985279 9h4i:I (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985280 9h4i:J (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985281 9h4i:K (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985282 9h4i:L (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985283 9h4i:M (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985284 9h4i:N (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985285 9h4i:O (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985286 9h4i:P (4.6) BS01 ATP N/A GO:0002758 ... A0A3B6DHR8 N/A
    985287 9h4n:A1 (2.46) BS01 rna N/A GO:0003723 ... P14148 N/A
    985288 9h4n:A1 (2.46) BS02 rna N/A GO:0003723 ... P14148 N/A
    985289 9h4n:A3 (2.46) BS01 rna N/A GO:0002181 ... P62270 N/A
    985290 9h4n:B1 (2.46) BS01 rna N/A GO:0003723 ... P12970 N/A
    985291 9h4n:B1 (2.46) BS02 rna N/A GO:0003723 ... P12970 N/A
    985292 9h4n:B3 (2.46) BS01 rna N/A GO:0000028 ... Q9CZX8 N/A
    985293 9h4n:C1 (2.46) BS01 rna N/A GO:0002181 ... P51410 N/A
    985294 9h4n:D1 (2.46) BS01 rna N/A GO:0000027 ... P86048 N/A
    985295 9h4n:D1 (2.46) BS02 rna N/A GO:0000027 ... P86048 N/A
    985296 9h4n:D2 (2.46) BS01 rna N/A GO:0002181 ... P62918 N/A
    985297 9h4n:D2 (2.46) BS02 rna N/A GO:0002181 ... P62918 N/A
    985298 9h4n:E1 (2.46) BS01 rna N/A GO:0000027 ... Q9CXW4 N/A
    985299 9h4n:E1 (2.46) BS02 rna N/A GO:0000027 ... Q9CXW4 N/A
    985300 9h4n:E2 (2.46) BS01 rna N/A GO:0002181 ... P27659 N/A
    985301 9h4n:E3 (2.46) BS01 rna N/A GO:0002181 ... P62267 N/A
    985302 9h4n:E3 (2.46) BS02 rna N/A GO:0002181 ... P62267 N/A
    985303 9h4n:F1 (2.46) BS01 rna N/A GO:0002181 ... P47963 N/A
    985304 9h4n:F1 (2.46) BS02 rna N/A GO:0002181 ... P47963 N/A
    985305 9h4n:F2 (2.46) BS01 rna N/A GO:0003735 ... Q9D8E6 N/A
    985306 9h4n:F2 (2.46) BS02 rna N/A GO:0003735 ... Q9D8E6 N/A
    985307 9h4n:F3 (2.46) BS01 rna N/A GO:0003735 ... P62855 N/A
    985308 9h4n:F3 (2.46) BS02 ZN N/A GO:0003735 ... P62855 N/A
    985309 9h4n:G1 (2.46) BS01 rna N/A GO:0003723 ... Q9CR57 N/A
    985310 9h4n:G2 (2.46) BS01 rna N/A GO:0000027 ... P47962 N/A
    985311 9h4n:G2 (2.46) BS02 rna N/A GO:0000027 ... P47962 N/A
    985312 9h4n:H1 (2.46) BS01 rna N/A GO:0002181 ... Q9CZM2 N/A
    985313 9h4n:H1 (2.46) BS02 rna N/A GO:0002181 ... Q9CZM2 N/A
    985314 9h4n:H2 (2.46) BS01 rna N/A GO:0003735 ... P47911 N/A
    985315 9h4n:H3 (2.46) BS01 rna N/A GO:0002181 ... P62274 N/A
    985316 9h4n:H3 (2.46) BS02 ZN N/A GO:0002181 ... P62274 N/A
    985317 9h4n:H3 (2.46) BS03 MG N/A GO:0002181 ... P62274 N/A
    985318 9h4n:I2 (2.46) BS01 rna N/A GO:0002181 ... P19253 N/A
    985319 9h4n:I3 (2.46) BS01 rna N/A GO:0043022 ... P68040 N/A
    985320 9h4n:J2 (2.46) BS01 rna N/A GO:0003735 ... Q9CPR4 N/A
    985321 9h4n:J2 (2.46) BS02 rna N/A GO:0003735 ... Q9CPR4 N/A
    985322 9h4n:J3 (2.46) BS01 rna N/A GO:0003723 ... P25444 N/A
    985323 9h4n:K2 (2.46) BS01 rna N/A GO:0002181 ... P35980 N/A
    985324 9h4n:K3 (2.46) BS01 rna N/A GO:0003735 ... P62754 N/A
    985325 9h4n:L2 (2.46) BS01 rna N/A GO:0003723 ... P84099 N/A
    985326 9h4n:L2 (2.46) BS02 rna N/A GO:0003723 ... P84099 N/A
    985327 9h4n:L3 (2.46) BS01 rna N/A GO:0002181 ... Q6ZWN5 N/A
    985328 9h4n:M2 (2.46) BS01 rna N/A GO:0002181 ... P62717 N/A
    985329 9h4n:M2 (2.46) BS02 rna N/A GO:0002181 ... P62717 N/A
    985330 9h4n:N2 (2.46) BS01 rna N/A GO:0001650 ... O09167 N/A
    985331 9h4n:N2 (2.46) BS02 rna N/A GO:0001650 ... O09167 N/A
    985332 9h4n:N3 (2.46) BS01 rna N/A GO:0000462 ... P62301 N/A
    985333 9h4n:O2 (2.46) BS01 rna N/A GO:0003735 ... P67984 N/A
    985334 9h4n:O3 (2.46) BS01 rna N/A GO:0003735 ... P62264 N/A
    985335 9h4n:P2 (2.46) BS01 rna N/A GO:0000122 ... P62830 N/A
    985336 9h4n:P2 (2.46) BS02 rna N/A GO:0000122 ... P62830 N/A
    985337 9h4n:P3 (2.46) BS01 rna N/A GO:0002181 ... P62245 N/A
    985338 9h4n:Q2 (2.46) BS01 rna N/A GO:0003735 ... Q8BP67 N/A
    985339 9h4n:Q3 (2.46) BS01 rna N/A GO:0002181 ... P62849 N/A
    985340 9h4n:R2 (2.46) BS01 rna N/A GO:0003735 ... P62751 N/A
    985341 9h4n:R2 (2.46) BS02 rna N/A GO:0003735 ... P62751 N/A
    985342 9h4n:S2 (2.46) BS01 rna N/A GO:0002181 ... P61255 N/A
    985343 9h4n:S2 (2.46) BS02 rna N/A GO:0002181 ... P61255 N/A
    985344 9h4n:S3 (2.46) BS01 rna N/A GO:0003735 ... Q6ZWY3 N/A
    985345 9h4n:T2 (2.46) BS01 rna N/A GO:0002181 ... P61358 N/A
    985346 9h4n:T3 (2.46) BS01 rna N/A GO:0003735 ... P62862 N/A
    985347 9h4n:U2 (2.46) BS01 rna N/A GO:0002181 ... P14115 N/A
    985348 9h4n:V2 (2.46) BS01 rna N/A GO:0003735 ... P47915 N/A
    985349 9h4n:W2 (2.46) BS01 rna N/A GO:0003723 ... P62889 N/A
    985350 9h4n:X2 (2.46) BS01 rna N/A GO:0003735 ... P62900 N/A
    985351 9h4n:Y2 (2.46) BS01 rna N/A GO:0002181 ... P62911 N/A
    985352 9h4n:Z2 (2.46) BS01 rna N/A GO:0002181 ... O55142 N/A
    985353 9h4n:a2 (2.46) BS01 rna N/A GO:0002181 ... Q9D1R9 N/A
    985354 9h4n:b2 (2.46) BS01 rna N/A GO:0000463 ... Q6ZWV7 N/A
    985355 9h4n:b2 (2.46) BS02 rna N/A GO:0000463 ... Q6ZWV7 N/A
    985356 9h4n:c2 (2.46) BS01 rna N/A GO:0002181 ... P47964 N/A
    985357 9h4n:d2 (2.46) BS01 rna N/A GO:0003735 ... Q9D823 N/A
    985358 9h4n:d2 (2.46) BS02 rna N/A GO:0003735 ... Q9D823 N/A
    985359 9h4n:d2 (2.46) BS03 ZN N/A GO:0003735 ... Q9D823 N/A
    985360 9h4n:e2 (2.46) BS01 rna N/A GO:0001501 ... Q9JJI8 N/A
    985361 9h4n:f2 (2.46) BS01 rna N/A GO:0002181 ... P62892 N/A
    985362 9h4n:f2 (2.46) BS02 rna N/A GO:0002181 ... P62892 N/A
    985363 9h4n:g2 (2.46) BS01 rna N/A GO:0003735 ... P62984 N/A
    985364 9h4n:g2 (2.46) BS02 ZN N/A GO:0003735 ... P62984 N/A
    985365 9h4n:i2 (2.46) BS01 rna N/A GO:0002181 ... P83882 N/A
    985366 9h4n:i2 (2.46) BS02 rna N/A GO:0002181 ... P83882 N/A
    985367 9h4n:i2 (2.46) BS03 ZN N/A GO:0002181 ... P83882 N/A
    985368 9h4n:j2 (2.46) BS01 rna N/A GO:0002181 ... P61514 N/A
    985369 9h4n:j2 (2.46) BS02 ZN N/A GO:0002181 ... P61514 N/A
    985370 9h4n:k2 (2.46) BS01 rna N/A GO:0002181 ... P41105 N/A
    985371 9h4n:o2 (2.46) BS01 rna N/A GO:0003735 ... P14206 N/A
    985372 9h4n:p2 (2.46) BS01 rna N/A GO:0003735 ... P97351 N/A
    985373 9h4n:p2 (2.46) BS02 rna N/A GO:0003735 ... P97351 N/A
    985374 9h4n:q2 (2.46) BS01 rna N/A GO:0000977 ... P62908 N/A
    985375 9h4n:q2 (2.46) BS02 peptide N/A GO:0000977 ... P62908 N/A
    985376 9h4n:r2 (2.46) BS01 rna N/A GO:0002181 ... P62702 N/A
    985377 9h4n:s2 (2.46) BS01 rna N/A GO:0003723 ... P97461 N/A
    985378 9h4n:v2 (2.46) BS01 rna N/A N/A P63325 N/A
    985379 9h4n:w2 (2.46) BS01 rna N/A GO:0002181 ... P62281 N/A
    985380 9h4n:x2 (2.46) BS01 rna N/A GO:0000028 ... P62843 N/A
    985381 9h4n:y2 (2.46) BS01 rna N/A GO:0000462 ... P14131 N/A
    985382 9h4n:z2 (2.46) BS01 rna N/A GO:0003735 ... P63276 N/A
    985383 9h4o:A (2.0) BS01 A1ISG N/A GO:0002225 ... Q16552 39715021
    985384 9h4o:B (2.0) BS01 A1ISG N/A GO:0002225 ... Q16552 39715021
    985385 9h4o:C (2.0) BS01 A1ISG N/A GO:0002225 ... Q16552 39715021
    985386 9h4o:D (2.0) BS01 A1ISG N/A GO:0002225 ... Q16552 39715021
    985387 9h4p:BD (2.44) BS01 MG N/A GO:0046872 ... A0A410N6T6 41042861
    985388 9h4p:BE (2.44) BS01 MG N/A GO:0046872 ... A0A410N6T6 41042861
    985389 9h4p:BF (2.44) BS01 MG N/A GO:0046872 ... A0A410N6T6 41042861
    985390 9h4p:PM (2.44) BS01 MG N/A GO:0046872 ... A0A410N6S3 41042861
    985391 9h4p:PN (2.44) BS01 MG N/A GO:0046872 ... A0A410N6S3 41042861
    985392 9h4p:PO (2.44) BS01 MG N/A GO:0046872 ... A0A410N6S3 41042861
    985393 9h4p:PS (2.44) BS01 MG N/A GO:0046872 ... A0A410N6S3 41042861
    985394 9h4p:PT (2.44) BS01 MG N/A GO:0046872 ... A0A410N6S3 41042861
    985395 9h4p:PW (2.44) BS01 MG N/A GO:0046872 ... A0A410N6S3 41042861
    985396 9h4q:a (3.1) BS01 MG N/A GO:0000329 ... Q00582 41680390
    985397 9h4q:a (3.1) BS02 AF3 N/A GO:0000329 ... Q00582 41680390
    985398 9h4q:a (3.1) BS03 GDP N/A GO:0000329 ... Q00582 41680390
    985399 9h4q:c (3.1) BS01 GDP N/A GO:0000329 ... P53290 41680390
    985400 9h4t:A (1.86) BS01 PGD N/A GO:0016491 ... P33225 39769096

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).