SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    988001 9hdm:B (1.55) BS01 MN N/A N/A Q7SHQ5 N/A
    988002 9hdn:A (1.77) BS01 A1IT2 N/A GO:0008233 ... P0DTD1 N/A
    988003 9hdn:B (1.77) BS01 A1IT2 N/A GO:0008233 ... P0DTD1 N/A
    988004 9hdn:C (1.77) BS01 A1IT2 N/A GO:0008233 ... P0DTD1 N/A
    988005 9hdn:D (1.77) BS01 A1IT2 N/A GO:0008233 ... P0DTD1 N/A
    988006 9hdo:A (2.3) BS01 dna N/A GO:0003824 ... O00370 40048554
    988007 9hdo:A (2.3) BS02 rna N/A GO:0003824 ... O00370 40048554
    988008 9hdo:A (2.3) BS03 dna N/A GO:0003824 ... O00370 40048554
    988009 9hdo:A (2.3) BS04 dna N/A GO:0003824 ... O00370 40048554
    988010 9hdo:A (2.3) BS05 dna N/A GO:0003824 ... O00370 40048554
    988011 9hdo:A (2.3) BS06 MG N/A GO:0003824 ... O00370 40048554
    988012 9hdo:A (2.3) BS07 ZN N/A GO:0003824 ... O00370 40048554
    988013 9hdo:A (2.3) BS08 D3T N/A GO:0003824 ... O00370 40048554
    988014 9hdp:A (2.5) BS01 dna N/A GO:0003824 ... O00370 40048554
    988015 9hdp:A (2.5) BS02 rna N/A GO:0003824 ... O00370 40048554
    988016 9hdp:A (2.5) BS03 dna N/A GO:0003824 ... O00370 40048554
    988017 9hdp:A (2.5) BS04 dna N/A GO:0003824 ... O00370 40048554
    988018 9hdp:A (2.5) BS05 dna N/A GO:0003824 ... O00370 40048554
    988019 9hdp:A (2.5) BS06 MG N/A GO:0003824 ... O00370 40048554
    988020 9hdp:A (2.5) BS07 ZN N/A GO:0003824 ... O00370 40048554
    988021 9hdp:A (2.5) BS08 D3T N/A GO:0003824 ... O00370 40048554
    988022 9hdq:A (2.45) BS01 dna N/A GO:0003824 ... O00370 40048554
    988023 9hdq:A (2.45) BS02 rna N/A GO:0003824 ... O00370 40048554
    988024 9hdq:A (2.45) BS03 dna N/A GO:0003824 ... O00370 40048554
    988025 9hdq:A (2.45) BS04 dna N/A GO:0003824 ... O00370 40048554
    988026 9hdq:A (2.45) BS05 dna N/A GO:0003824 ... O00370 40048554
    988027 9hdq:A (2.45) BS06 ZN N/A GO:0003824 ... O00370 40048554
    988028 9hdr:A (3.1) BS01 dna N/A GO:0003824 ... O00370 40048554
    988029 9hdr:A (3.1) BS02 rna N/A GO:0003824 ... O00370 40048554
    988030 9hdr:A (3.1) BS03 dna N/A GO:0003824 ... O00370 40048554
    988031 9hdr:A (3.1) BS04 dna N/A GO:0003824 ... O00370 40048554
    988032 9hdr:A (3.1) BS05 dna N/A GO:0003824 ... O00370 40048554
    988033 9hdr:A (3.1) BS06 MG N/A GO:0003824 ... O00370 40048554
    988034 9hdr:A (3.1) BS07 ZN N/A GO:0003824 ... O00370 40048554
    988035 9hdr:A (3.1) BS08 D3T N/A GO:0003824 ... O00370 40048554
    988036 9hds:A (0.86) BS01 U5P N/A GO:0004590 ... P11172 41058608
    988037 9hds:A (0.86) BS02 PRO N/A GO:0004590 ... P11172 41058608
    988038 9hds:A (0.86) BS03 TMP N/A GO:0004590 ... P11172 41058608
    988039 9hdt:A (1.3) BS01 DU N/A GO:0004590 ... P11172 41058608
    988040 9hdu:A (1.0) BS01 XMP N/A GO:0004590 ... P11172 41058608
    988041 9hdu:A (1.0) BS02 PRO N/A GO:0004590 ... P11172 41058608
    988042 9hdv:A (1.5) BS01 A1IT4 N/A GO:0004590 ... P11172 41058608
    988043 9hdw:A (0.83) BS01 U5P N/A N/A P11172 N/A
    988044 9hdx:A (1.05) BS01 TMP N/A GO:0004590 ... P11172 41058608
    988045 9hdx:A (1.05) BS02 TMP N/A GO:0004590 ... P11172 41058608
    988046 9hdx:B (1.05) BS01 TMP N/A GO:0004590 ... P11172 41058608
    988047 9hdx:B (1.05) BS02 TMP N/A GO:0004590 ... P11172 41058608
    988048 9hdy:A (1.6) BS01 A1IT3 N/A GO:0004590 ... P11172 41058608
    988049 9hdz:A (1.79) BS01 5MU N/A GO:0004590 ... P11172 41058608
    988050 9hdz:A (1.79) BS02 5MU N/A GO:0004590 ... P11172 41058608
    988051 9hdz:B (1.79) BS01 5MU N/A GO:0004590 ... P11172 41058608
    988052 9hdz:B (1.79) BS02 5MU N/A GO:0004590 ... P11172 41058608
    988053 9he0:A (3.18) BS01 SF4 N/A GO:0080146 ... Q6LX84 N/A
    988054 9he0:B (3.18) BS01 SF4 N/A GO:0080146 ... Q6LX84 N/A
    988055 9he1:A (3.0) BS01 peptide N/A GO:0019867 ... P0A940 N/A
    988056 9he2:A (3.74) BS01 SF4 N/A GO:0080146 ... Q6LX84 N/A
    988057 9he2:B (3.74) BS01 SF4 N/A GO:0080146 ... Q6LX84 N/A
    988058 9he3:A (2.58926) BS01 FE N/A GO:0004497 ... P17752 40534674
    988059 9he3:A (2.58926) BS02 A1IT9 N/A GO:0004497 ... P17752 40534674
    988060 9he3:B (2.58926) BS01 FE N/A GO:0004497 ... P17752 40534674
    988061 9he3:B (2.58926) BS02 A1IT9 N/A GO:0004497 ... P17752 40534674
    988062 9he5:A (1.844) BS01 FES N/A GO:0003954 ... O66842 41265450
    988063 9he5:B (1.844) BS01 FMN N/A GO:0008137 ... O66841 41265450
    988064 9he5:B (1.844) BS02 SF4 N/A GO:0008137 ... O66841 41265450
    988065 9he5:C (1.844) BS01 FES N/A GO:0003954 ... O66842 41265450
    988066 9he5:D (1.844) BS01 FMN N/A GO:0008137 ... O66841 41265450
    988067 9he5:D (1.844) BS02 SF4 N/A GO:0008137 ... O66841 41265450
    988068 9he6:A (2.3) BS01 MAN N/A GO:0004601 ... A0A4V1Q376 N/A
    988069 9he6:A (2.3) BS02 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988070 9he6:A (2.3) BS03 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988071 9he6:B (2.3) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988072 9he6:B (2.3) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988073 9he6:C (2.3) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988074 9he6:C (2.3) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988075 9he7:A (2.0) BS01 MAN N/A GO:0004601 ... A0A4V1Q376 N/A
    988076 9he7:A (2.0) BS02 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988077 9he7:A (2.0) BS03 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988078 9he7:B (2.0) BS01 MAN N/A GO:0004601 ... A0A4V1Q376 N/A
    988079 9he7:B (2.0) BS02 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988080 9he7:B (2.0) BS03 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988081 9he7:C (2.0) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988082 9he7:C (2.0) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988083 9he9:A (2.15) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988084 9he9:A (2.15) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988085 9he9:B (2.15) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988086 9he9:B (2.15) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988087 9he9:C (2.15) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988088 9he9:C (2.15) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988089 9hea:A (2.55) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988090 9hea:A (2.55) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988091 9hea:B (2.55) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988092 9hea:B (2.55) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988093 9hea:C (2.55) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988094 9hea:C (2.55) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988095 9heb:A (2.55) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988096 9heb:A (2.55) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988097 9heb:B (2.55) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988098 9heb:B (2.55) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988099 9heb:C (2.55) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988100 9heb:C (2.55) BS02 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988101 9hec:A (2.2) BS01 A1IUB N/A GO:0004601 ... A0A4V1Q376 N/A
    988102 9hec:A (2.2) BS02 A1IUB N/A GO:0004601 ... A0A4V1Q376 N/A
    988103 9hec:A (2.2) BS03 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988104 9hec:A (2.2) BS04 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988105 9hec:B (2.2) BS01 A1IUB N/A GO:0004601 ... A0A4V1Q376 N/A
    988106 9hec:B (2.2) BS02 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988107 9hec:B (2.2) BS03 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988108 9hec:C (2.2) BS01 A1IUB N/A GO:0004601 ... A0A4V1Q376 N/A
    988109 9hec:C (2.2) BS02 A1IUB N/A GO:0004601 ... A0A4V1Q376 N/A
    988110 9hec:C (2.2) BS03 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988111 9hec:C (2.2) BS04 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988112 9hed:A (2.45) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988113 9hed:A (2.45) BS02 A1IUA N/A GO:0004601 ... A0A4V1Q376 N/A
    988114 9hed:A (2.45) BS03 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988115 9hed:B (2.45) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988116 9hed:B (2.45) BS02 A1IUA N/A GO:0004601 ... A0A4V1Q376 N/A
    988117 9hed:B (2.45) BS03 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988118 9hed:C (2.45) BS01 HEM N/A GO:0004601 ... A0A4V1Q376 N/A
    988119 9hed:C (2.45) BS02 A1IUA N/A GO:0004601 ... A0A4V1Q376 N/A
    988120 9hed:C (2.45) BS03 MG N/A GO:0004601 ... A0A4V1Q376 N/A
    988121 9heg:A (2.05) BS01 FES N/A GO:0003954 ... O66842 41265450
    988122 9heg:B (2.05) BS01 SF4 N/A GO:0008137 ... O66841 41265450
    988123 9heg:B (2.05) BS02 FMN N/A GO:0008137 ... O66841 41265450
    988124 9heg:C (2.05) BS01 FES N/A GO:0003954 ... O66842 41265450
    988125 9heg:D (2.05) BS01 SF4 N/A GO:0008137 ... O66841 41265450
    988126 9heg:D (2.05) BS02 FMN N/A GO:0008137 ... O66841 41265450
    988127 9heh:A (1.5) BS01 CHT N/A N/A N/A 40753681
    988128 9hei:A (2.92) BS01 OEX N/A GO:0005506 ... P07753 N/A
    988129 9hei:A (2.92) BS02 FE2 N/A GO:0005506 ... P07753 N/A
    988130 9hei:A (2.92) BS03 CLA N/A GO:0005506 ... P07753 N/A
    988131 9hei:A (2.92) BS04 CLA N/A GO:0005506 ... P07753 N/A
    988132 9hei:A (2.92) BS05 PHO N/A GO:0005506 ... P07753 N/A
    988133 9hei:A (2.92) BS06 CLA N/A GO:0005506 ... P07753 N/A
    988134 9hei:A (2.92) BS07 CLA N/A GO:0005506 ... P07753 N/A
    988135 9hei:A (2.92) BS08 CLA N/A GO:0005506 ... P07753 N/A
    988136 9hei:A (2.92) BS09 PHO N/A GO:0005506 ... P07753 N/A
    988137 9hei:A (2.92) BS10 BCT N/A GO:0005506 ... P07753 N/A
    988138 9hei:A (2.92) BS11 CLA N/A GO:0005506 ... P07753 N/A
    988139 9hei:B (2.92) BS01 peptide N/A GO:0009523 ... P37255 N/A
    988140 9hei:B (2.92) BS02 CLA N/A GO:0009523 ... P37255 N/A
    988141 9hei:B (2.92) BS03 CLA N/A GO:0009523 ... P37255 N/A
    988142 9hei:B (2.92) BS04 CLA N/A GO:0009523 ... P37255 N/A
    988143 9hei:B (2.92) BS05 CLA N/A GO:0009523 ... P37255 N/A
    988144 9hei:B (2.92) BS06 CLA N/A GO:0009523 ... P37255 N/A
    988145 9hei:B (2.92) BS07 CLA N/A GO:0009523 ... P37255 N/A
    988146 9hei:B (2.92) BS08 CLA N/A GO:0009523 ... P37255 N/A
    988147 9hei:B (2.92) BS09 CLA N/A GO:0009523 ... P37255 N/A
    988148 9hei:B (2.92) BS10 CLA N/A GO:0009523 ... P37255 N/A
    988149 9hei:B (2.92) BS11 CLA N/A GO:0009523 ... P37255 N/A
    988150 9hei:B (2.92) BS12 CLA N/A GO:0009523 ... P37255 N/A
    988151 9hei:B (2.92) BS13 CLA N/A GO:0009523 ... P37255 N/A
    988152 9hei:B (2.92) BS14 CLA N/A GO:0009523 ... P37255 N/A
    988153 9hei:B (2.92) BS15 CLA N/A GO:0009523 ... P37255 N/A
    988154 9hei:B (2.92) BS16 CLA N/A GO:0009523 ... P37255 N/A
    988155 9hei:B (2.92) BS17 CLA N/A GO:0009523 ... P37255 N/A
    988156 9hei:C (2.92) BS01 OEX N/A GO:0005737 ... P10898 N/A
    988157 9hei:C (2.92) BS02 CLA N/A GO:0005737 ... P10898 N/A
    988158 9hei:C (2.92) BS03 CLA N/A GO:0005737 ... P10898 N/A
    988159 9hei:C (2.92) BS04 CLA N/A GO:0005737 ... P10898 N/A
    988160 9hei:C (2.92) BS05 CLA N/A GO:0005737 ... P10898 N/A
    988161 9hei:C (2.92) BS06 CLA N/A GO:0005737 ... P10898 N/A
    988162 9hei:C (2.92) BS07 CLA N/A GO:0005737 ... P10898 N/A
    988163 9hei:C (2.92) BS08 CLA N/A GO:0005737 ... P10898 N/A
    988164 9hei:C (2.92) BS09 CLA N/A GO:0005737 ... P10898 N/A
    988165 9hei:C (2.92) BS10 CLA N/A GO:0005737 ... P10898 N/A
    988166 9hei:C (2.92) BS11 CLA N/A GO:0005737 ... P10898 N/A
    988167 9hei:C (2.92) BS12 CLA N/A GO:0005737 ... P10898 N/A
    988168 9hei:C (2.92) BS13 CLA N/A GO:0005737 ... P10898 N/A
    988169 9hei:C (2.92) BS14 CLA N/A GO:0005737 ... P10898 N/A
    988170 9hei:D (2.92) BS01 peptide N/A GO:0005506 ... P06007 N/A
    988171 9hei:D (2.92) BS02 FE2 N/A GO:0005506 ... P06007 N/A
    988172 9hei:D (2.92) BS03 CLA N/A GO:0005506 ... P06007 N/A
    988173 9hei:D (2.92) BS04 PHO N/A GO:0005506 ... P06007 N/A
    988174 9hei:D (2.92) BS05 CLA N/A GO:0005506 ... P06007 N/A
    988175 9hei:D (2.92) BS06 CLA N/A GO:0005506 ... P06007 N/A
    988176 9hei:D (2.92) BS07 PHO N/A GO:0005506 ... P06007 N/A
    988177 9hei:D (2.92) BS08 BCT N/A GO:0005506 ... P06007 N/A
    988178 9hei:D (2.92) BS09 CLA N/A GO:0005506 ... P06007 N/A
    988179 9hei:D (2.92) BS10 CLA N/A GO:0005506 ... P06007 N/A
    988180 9hei:E (2.92) BS01 peptide N/A GO:0005506 ... P48268 N/A
    988181 9hei:E (2.92) BS02 HEM N/A GO:0005506 ... P48268 N/A
    988182 9hei:F (2.92) BS01 HEM N/A N/A Q08363 N/A
    988183 9hei:H (2.92) BS01 CLA N/A N/A P22666 N/A
    988184 9hei:H (2.92) BS02 CLA N/A N/A P22666 N/A
    988185 9hei:H (2.92) BS03 CLA N/A N/A P22666 N/A
    988186 9hei:H (2.92) BS04 CLA N/A N/A P22666 N/A
    988187 9hei:H (2.92) BS05 CLA N/A N/A P22666 N/A
    988188 9hei:I (2.92) BS01 CLA N/A GO:0005737 ... P59763 N/A
    988189 9hei:K (2.92) BS01 CLA N/A N/A P18263 N/A
    988190 9hei:K (2.92) BS02 CLA N/A N/A P18263 N/A
    988191 9hei:K (2.92) BS03 CLA N/A N/A P18263 N/A
    988192 9hei:L (2.92) BS01 peptide N/A GO:0005737 ... Q1KVX2 N/A
    988193 9hei:L (2.92) BS02 CLA N/A GO:0005737 ... Q1KVX2 N/A
    988194 9hei:Z (2.92) BS01 CLA N/A GO:0009535 ... P92276 N/A
    988195 9hej:A (2.82) BS01 CA N/A GO:0016020 ... Q86VB7 40681524
    988196 9hej:A (2.82) BS02 CA N/A GO:0016020 ... Q86VB7 40681524
    988197 9hej:A (2.82) BS03 CA N/A GO:0016020 ... Q86VB7 40681524
    988198 9hej:A (2.82) BS04 CA N/A GO:0016020 ... Q86VB7 40681524
    988199 9hej:A (2.82) BS05 CA N/A GO:0016020 ... Q86VB7 40681524
    988200 9hej:A (2.82) BS06 CA N/A GO:0016020 ... Q86VB7 40681524

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).