SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    989601 9hm0:dd (3.0) BS01 rna N/A GO:0000150 ... Q06630 41339860
    989602 9hm2:A (1.72) BS01 peptide N/A N/A Q07157 41457070
    989603 9hm2:B (1.72) BS01 peptide N/A N/A Q07157 41457070
    989604 9hm4:A (3.2) BS01 rna N/A N/A N/A N/A
    989605 9hm4:A (3.2) BS02 rna N/A N/A N/A N/A
    989606 9hm4:A (3.2) BS03 rna N/A N/A N/A N/A
    989607 9hm4:A (3.2) BS04 MG N/A N/A N/A N/A
    989608 9hm5:A (3.3) BS01 rna N/A N/A N/A N/A
    989609 9hm5:A (3.3) BS02 rna N/A N/A N/A N/A
    989610 9hm5:A (3.3) BS03 rna N/A N/A N/A N/A
    989611 9hm5:A (3.3) BS04 MG N/A N/A N/A N/A
    989612 9hm5:A (3.3) BS05 MG N/A N/A N/A N/A
    989613 9hm6:A (4.0) BS01 rna N/A N/A N/A N/A
    989614 9hm6:A (4.0) BS02 rna N/A N/A N/A N/A
    989615 9hm7:A (3.1) BS01 ZN N/A GO:0000070 ... Q14674 N/A
    989616 9hm8:A (-1.00) BS01 peptide N/A N/A Q5VT52 N/A
    989617 9hm9:A (3.4) BS01 ADP N/A GO:0000287 ... P68135 39928047
    989618 9hm9:B (3.4) BS01 ADP N/A GO:0000287 ... P68135 39928047
    989619 9hm9:C (3.4) BS01 peptide N/A GO:0000287 ... P68135 39928047
    989620 9hm9:C (3.4) BS02 ADP N/A GO:0000287 ... P68135 39928047
    989621 9hm9:D (3.4) BS01 ADP N/A GO:0000287 ... P68135 39928047
    989622 9hm9:E (3.4) BS01 ADP N/A GO:0000287 ... P68135 39928047
    989623 9hma:A (3.3) BS01 ZN N/A GO:0000070 ... Q14674 N/A
    989624 9hmc:A (1.65) BS01 A1IWC N/A GO:0005095 ... O43924 N/A
    989625 9hmc:B (1.65) BS01 A1IWC N/A GO:0005095 ... O43924 N/A
    989626 9hmd:A (2.5) BS01 A1IWD N/A GO:0005095 ... O43924 N/A
    989627 9hmd:B (2.5) BS01 A1IWD N/A GO:0005095 ... O43924 N/A
    989628 9hml:B (2.171) BS01 FUC N/A N/A P43626 40500441
    989629 9hmm:A (2.9) BS01 ZN N/A GO:0002100 ... Q6P6J0 40120092
    989630 9hmm:B (2.9) BS01 ZN N/A GO:0005634 ... Q6PAT0 40120092
    989631 9hmn:H (2.55) BS01 SA1 N/A GO:0004298 ... P28072 40142161
    989632 9hmn:I (2.55) BS01 SA1 N/A GO:0004298 ... Q99436 40142161
    989633 9hmn:L (2.55) BS01 SA1 N/A GO:0004298 ... P28074 40142161
    989634 9hmn:Z (2.55) BS01 SA1 N/A GO:0004298 ... P28072 40142161
    989635 9hmn:a (2.55) BS01 SA1 N/A GO:0004298 ... Q99436 40142161
    989636 9hmn:b (2.55) BS01 SA1 N/A GO:0004298 ... P28074 40142161
    989637 9hmp:A (4.0) BS01 AMP N/A N/A P38756 N/A
    989638 9hmp:B (4.0) BS01 AMP N/A N/A P38756 N/A
    989639 9hmp:C (4.0) BS01 AMP N/A N/A P38756 N/A
    989640 9hmp:D (4.0) BS01 AMP N/A N/A P38756 N/A
    989641 9hmq:AAA (2.25) BS01 NH3 N/A GO:0003796 ... P00698 40312957
    989642 9hmr:A (1.5) BS01 GDP N/A N/A P01116 41679298
    989643 9hmr:A (1.5) BS02 A1IWE N/A N/A P01116 41679298
    989644 9hmr:B (1.5) BS01 A1IWE N/A N/A P01116 41679298
    989645 9hmr:B (1.5) BS02 GDP N/A N/A P01116 41679298
    989646 9hmr:C (1.5) BS01 A1IWE N/A N/A P01116 41679298
    989647 9hmr:C (1.5) BS02 GDP N/A N/A P01116 41679298
    989648 9hmr:C (1.5) BS03 A1IWE N/A N/A P01116 41679298
    989649 9hmr:D (1.5) BS01 A1IWE N/A N/A P01116 41679298
    989650 9hmr:D (1.5) BS02 GDP N/A N/A P01116 41679298
    989651 9hms:C (3.4) BS01 ZN N/A GO:0004197 ... Q14674 N/A
    989652 9hmt:AaA (1.38) BS01 A1IWF N/A GO:0006633 ... Q42561 N/A
    989653 9hmu:A (1.85) BS01 CNC N/A N/A D5EK51 N/A
    989654 9hmu:A (1.85) BS02 CA N/A N/A D5EK51 N/A
    989655 9hmu:B (1.85) BS01 CNC N/A N/A D5EK51 N/A
    989656 9hmu:B (1.85) BS02 CA N/A N/A D5EK51 N/A
    989657 9hmu:C (1.85) BS01 CNC N/A N/A D5EK51 N/A
    989658 9hmu:C (1.85) BS02 CA N/A N/A D5EK51 N/A
    989659 9hmw:AA (2.25) BS01 rna N/A GO:0000325 ... Q9SIP7 41678627
    989660 9hmw:AB (2.25) BS01 rna N/A GO:0003729 ... Q9FLF0 41678627
    989661 9hmw:AC (2.25) BS01 rna N/A GO:0003729 ... Q93VB8 41678627
    989662 9hmw:AD (2.25) BS01 rna N/A GO:0000325 ... P51427 41678627
    989663 9hmw:AE (2.25) BS01 rna N/A GO:0000325 ... P42798 41678627
    989664 9hmw:AF (2.25) BS01 rna N/A GO:0000462 ... Q9SK22 41678627
    989665 9hmw:AG (2.25) BS01 rna N/A GO:0000325 ... P41127 41678627
    989666 9hmw:AG (2.25) BS02 rna N/A GO:0000325 ... P41127 41678627
    989667 9hmw:AH (2.25) BS01 rna N/A GO:0000325 ... Q9T043 41678627
    989668 9hmw:AI (2.25) BS01 rna N/A GO:0003723 ... Q9SW09 41678627
    989669 9hmw:AJ (2.25) BS01 rna N/A GO:0002181 ... Q940B0 41678627
    989670 9hmw:AK (2.25) BS01 rna N/A GO:0003723 ... Q9SRX2 41678627
    989671 9hmw:AK (2.25) BS02 rna N/A GO:0003723 ... Q9SRX2 41678627
    989672 9hmw:AL (2.25) BS01 rna N/A GO:0003735 ... A0A1P8AY36 41678627
    989673 9hmw:AL (2.25) BS02 rna N/A GO:0003735 ... A0A1P8AY36 41678627
    989674 9hmw:AM (2.25) BS01 rna N/A GO:0003674 ... Q43291 41678627
    989675 9hmw:AM (2.25) BS02 rna N/A GO:0003674 ... Q43291 41678627
    989676 9hmw:AN (2.25) BS01 rna N/A GO:0002181 ... Q9M9W1 41678627
    989677 9hmw:AO (2.25) BS01 rna N/A GO:0002181 ... Q42347 41678627
    989678 9hmw:AP (2.25) BS01 rna N/A GO:0003729 ... P51419 41678627
    989679 9hmw:AQ (2.25) BS01 rna N/A GO:0003729 ... O82204 41678627
    989680 9hmw:AR (2.25) BS01 rna N/A N/A F4JC32 41678627
    989681 9hmw:AT (2.25) BS01 rna N/A GO:0003723 ... Q8VZ19 41678627
    989682 9hmw:AU (2.25) BS01 rna N/A GO:0002181 ... Q9STR1 41678627
    989683 9hmw:AV (2.25) BS01 rna N/A GO:0003729 ... P49211 41678627
    989684 9hmw:AW (2.25) BS01 rna N/A GO:0002181 ... Q9C912 41678627
    989685 9hmw:AX (2.25) BS01 rna N/A GO:0000325 ... Q9M352 41678627
    989686 9hmw:AY (2.25) BS01 rna N/A GO:0000448 ... Q8LFH7 41678627
    989687 9hmw:AY (2.25) BS02 rna N/A GO:0000448 ... Q8LFH7 41678627
    989688 9hmw:AY (2.25) BS03 ZN N/A GO:0000448 ... Q8LFH7 41678627
    989689 9hmw:AZ (2.25) BS01 rna N/A GO:0002181 ... O22860 41678627
    989690 9hmw:Aa (2.25) BS01 rna N/A GO:0002181 ... Q93VG5 41678627
    989691 9hmw:BA (2.25) BS01 rna N/A GO:0002181 ... P51424 41678627
    989692 9hmw:BA (2.25) BS02 rna N/A GO:0002181 ... P51424 41678627
    989693 9hmw:BB (2.25) BS01 rna N/A GO:0003729 ... Q9LZ17 41678627
    989694 9hmw:BD (2.25) BS01 rna N/A GO:0002181 ... O23290 41678627
    989695 9hmw:BD (2.25) BS02 rna N/A GO:0002181 ... O23290 41678627
    989696 9hmw:BD (2.25) BS03 ZN N/A GO:0002181 ... O23290 41678627
    989697 9hmw:BE (2.25) BS01 rna N/A GO:0003674 ... Q8RXU5 41678627
    989698 9hmw:BE (2.25) BS02 ZN N/A GO:0003674 ... Q8RXU5 41678627
    989699 9hmw:BF (2.25) BS01 rna N/A GO:0002181 ... Q9C9C6 41678627
    989700 9hmw:BG (2.25) BS01 rna N/A GO:0000325 ... Q9LZH9 41678627
    989701 9hmw:BG (2.25) BS02 rna N/A GO:0000325 ... Q9LZH9 41678627
    989702 9hmw:BH (2.25) BS01 rna N/A GO:0003729 ... Q9LRX8 41678627
    989703 9hmw:BI (2.25) BS01 rna N/A GO:0003729 ... P49690 41678627
    989704 9hmw:BJ (2.25) BS01 rna N/A GO:0003735 ... Q08770 41678627
    989705 9hmw:BJ (2.25) BS02 rna N/A GO:0003735 ... Q08770 41678627
    989706 9hmw:BJ (2.25) BS03 rna N/A GO:0003735 ... Q08770 41678627
    989707 9hmw:BK (2.25) BS01 rna N/A GO:0000027 ... Q8LBI1 41678627
    989708 9hmw:BK (2.25) BS02 rna N/A GO:0000027 ... Q8LBI1 41678627
    989709 9hmw:BL (2.25) BS01 rna N/A GO:0000325 ... Q9FNP8 41678627
    989710 9hmw:BM (2.25) BS01 rna N/A GO:0000325 ... Q93VI3 41678627
    989711 9hmw:BM (2.25) BS02 rna N/A GO:0000325 ... Q93VI3 41678627
    989712 9hmw:BN (2.25) BS01 rna N/A GO:0003729 ... Q9M3C3 41678627
    989713 9hmw:BN (2.25) BS02 rna N/A GO:0003729 ... Q9M3C3 41678627
    989714 9hmw:BO (2.25) BS01 rna N/A GO:0000325 ... P51414 41678627
    989715 9hmw:BO (2.25) BS02 rna N/A GO:0000325 ... P51414 41678627
    989716 9hmw:BP (2.25) BS01 rna N/A GO:0000463 ... Q9M3D2 41678627
    989717 9hmw:BP (2.25) BS02 rna N/A GO:0000463 ... Q9M3D2 41678627
    989718 9hmw:BQ (2.25) BS01 rna N/A GO:0000325 ... P46286 41678627
    989719 9hmw:BR (2.25) BS01 rna N/A GO:0003735 ... F4IT48 41678627
    989720 9hmw:BR (2.25) BS02 rna N/A GO:0003735 ... F4IT48 41678627
    989721 9hmw:BR (2.25) BS03 MG N/A GO:0003735 ... F4IT48 41678627
    989722 9hmw:BS (2.25) BS01 rna N/A GO:0000325 ... P17094 41678627
    989723 9hmw:BT (2.25) BS01 rna N/A GO:0003723 ... Q9SF40 41678627
    989724 9hmw:BT (2.25) BS02 rna N/A GO:0003723 ... Q9SF40 41678627
    989725 9hmw:BU (2.25) BS01 rna N/A GO:0003723 ... P42795 41678627
    989726 9hmw:BU (2.25) BS02 rna N/A GO:0003723 ... P42795 41678627
    989727 9hmw:BV (2.25) BS01 rna N/A GO:0003729 ... Q42262 41678627
    989728 9hmw:BW (2.25) BS01 rna N/A GO:0000447 ... Q3E902 41678627
    989729 9hmw:Ba (2.25) BS01 rna N/A GO:0003729 ... Q9STY6 41678627
    989730 9hmw:Ca (2.25) BS01 rna N/A GO:0002181 ... Q680P8 41678627
    989731 9hmw:Ca (2.25) BS02 ZN N/A GO:0002181 ... Q680P8 41678627
    989732 9hmw:Da (2.25) BS01 rna N/A GO:0000462 ... P59224 41678627
    989733 9hmw:Da (2.25) BS02 rna N/A GO:0000462 ... P59224 41678627
    989734 9hmw:Ea (2.25) BS01 rna N/A GO:0000325 ... O23515 41678627
    989735 9hmw:Ea (2.25) BS02 rna N/A GO:0000325 ... O23515 41678627
    989736 9hmw:Fa (2.25) BS01 rna N/A GO:0003729 ... Q42351 41678627
    989737 9hmw:Ga (2.25) BS01 rna N/A GO:0003729 ... B9DHA6 41678627
    989738 9hmw:Ga (2.25) BS02 ZN N/A GO:0003729 ... B9DHA6 41678627
    989739 9hmw:Ha (2.25) BS01 rna N/A GO:0003729 ... P49637 41678627
    989740 9hmw:Ia (2.25) BS01 rna N/A GO:0000325 ... P49209 41678627
    989741 9hmw:Ja (2.25) BS01 rna N/A GO:0003735 ... Q8VYK6 41678627
    989742 9hmw:Ka (2.25) BS01 rna N/A GO:0002181 ... Q8LC83 41678627
    989743 9hmw:La (2.25) BS01 rna N/A GO:0003729 ... Q9T029 41678627
    989744 9hmw:Ma (2.25) BS01 rna N/A GO:0003729 ... P49206 41678627
    989745 9hmw:Ma (2.25) BS02 ZN N/A GO:0003729 ... P49206 41678627
    989746 9hmw:Na (2.25) BS01 rna N/A GO:0003729 ... Q9M2F1 41678627
    989747 9hmw:Oa (2.25) BS01 rna N/A GO:0000028 ... P34789 41678627
    989748 9hmw:Pa (2.25) BS01 rna N/A GO:0003729 ... P49689 41678627
    989749 9hmw:Ra (2.25) BS01 rna N/A GO:0003729 ... Q8LD03 41678627
    989750 9hmw:Ta (2.25) BS01 rna N/A GO:0003729 ... P51430 41678627
    989751 9hmw:Ua (2.25) BS01 rna N/A GO:0000028 ... Q9CAX6 41678627
    989752 9hmw:Va (2.25) BS01 rna N/A GO:0003729 ... P49201 41678627
    989753 9hmw:Wa (2.25) BS01 rna N/A GO:0000325 ... P34788 41678627
    989754 9hmw:Xa (2.25) BS01 rna N/A GO:0003729 ... P16181 41678627
    989755 9hmw:Ya (2.25) BS01 rna N/A GO:0003735 ... Q9FY65 41678627
    989756 9hmw:Ya (2.25) BS02 rna N/A GO:0003735 ... Q9FY65 41678627
    989757 9hmw:Za (2.25) BS01 rna N/A GO:0000028 ... Q08682 41678627
    989758 9hn0:B (2.8) BS01 peptide N/A GO:0004197 ... Q14674 N/A
    989759 9hn0:B (2.8) BS02 ZN N/A GO:0004197 ... Q14674 N/A
    989760 9hn3:A (1.49) BS01 MG N/A GO:0004615 ... Q9Z2M7 N/A
    989761 9hn3:A (1.49) BS02 MG N/A GO:0004615 ... Q9Z2M7 N/A
    989762 9hn3:B (1.49) BS01 MG N/A GO:0004615 ... Q9Z2M7 N/A
    989763 9hn3:B (1.49) BS02 MG N/A GO:0004615 ... Q9Z2M7 N/A
    989764 9hn4:B (2.93) BS01 ZN N/A GO:0004197 ... Q14674 N/A
    989765 9hn5:A (2.96) BS01 ZN N/A GO:0004197 ... Q14674 N/A
    989766 9hn6:AAA (1.77) BS01 NH3 N/A GO:0003676 ... P61823 40312957
    989767 9hn6:BBB (1.77) BS01 PT N/A GO:0003676 ... P61823 40312957
    989768 9hn7:A (2.9) BS01 rna N/A GO:0002099 ... Q9JMA2 40745156
    989769 9hn7:A (2.9) BS02 9DG N/A GO:0002099 ... Q9JMA2 40745156
    989770 9hn7:B (2.9) BS01 rna N/A GO:0000049 ... B8ZXI1 40745156
    989771 9hn9:A (3.1) BS01 rna N/A GO:0002099 ... Q9JMA2 40745156
    989772 9hn9:A (3.1) BS02 9DG N/A GO:0002099 ... Q9JMA2 40745156
    989773 9hn9:B (3.1) BS01 rna N/A GO:0000049 ... B8ZXI1 40745156
    989774 9hne:A (3.9) BS01 A1IWG N/A GO:0005525 ... P15170 40813917
    989775 9hne:C (3.9) BS01 ZN N/A GO:0005515 ... Q96SW2 40813917
    989776 9hne:C (3.9) BS02 A1IWG N/A GO:0005515 ... Q96SW2 40813917
    989777 9hne:D (3.9) BS01 A1IWG N/A GO:0005525 ... P15170 40813917
    989778 9hne:F (3.9) BS01 ZN N/A GO:0005515 ... Q96SW2 40813917
    989779 9hne:F (3.9) BS02 A1IWG N/A GO:0005515 ... Q96SW2 40813917
    989780 9hnf:A (2.1) BS01 ACO N/A GO:0043720 ... A1B802 40169551
    989781 9hnf:A (2.1) BS02 AAE N/A GO:0043720 ... A1B802 40169551
    989782 9hnf:A (2.1) BS03 ZN N/A GO:0043720 ... A1B802 40169551
    989783 9hnf:B (2.1) BS01 ACO N/A GO:0043720 ... A1B802 40169551
    989784 9hnf:B (2.1) BS02 AAE N/A GO:0043720 ... A1B802 40169551
    989785 9hnf:B (2.1) BS03 ZN N/A GO:0043720 ... A1B802 40169551
    989786 9hnk:A (1.59) BS01 FAD N/A N/A Q9AAF5 40298610
    989787 9hnk:A (1.59) BS02 DLZ N/A N/A Q9AAF5 40298610
    989788 9hnk:A (1.59) BS03 SF4 N/A N/A Q9AAF5 40298610
    989789 9hnl:A (2.2) BS01 FAD N/A N/A Q9AAF5 40298610
    989790 9hnl:A (2.2) BS02 DLZ N/A N/A Q9AAF5 40298610
    989791 9hnl:A (2.2) BS03 SF4 N/A N/A Q9AAF5 40298610
    989792 9hnm:A (1.71) BS01 FAD N/A N/A Q9AAF5 40298610
    989793 9hnm:A (1.71) BS02 DLZ N/A N/A Q9AAF5 40298610
    989794 9hnm:A (1.71) BS03 SF4 N/A N/A Q9AAF5 40298610
    989795 9hnn:A (1.78) BS01 FAD N/A N/A Q9AAF5 40298610
    989796 9hnn:A (1.78) BS02 DLZ N/A N/A Q9AAF5 40298610
    989797 9hnn:A (1.78) BS03 SF4 N/A N/A Q9AAF5 40298610
    989798 9hno:A (2.3) BS01 FAD N/A N/A Q9AAF5 40298610
    989799 9hno:A (2.3) BS02 DLZ N/A N/A Q9AAF5 40298610
    989800 9hno:A (2.3) BS03 SF4 N/A N/A Q9AAF5 40298610

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).