SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    990401 9hs3:C (3.4) BS03 0O2 N/A GO:0005829 ... P0ADR8 41197623
    990402 9hs3:D (3.4) BS01 HSX N/A GO:0005829 ... P0ADR8 41197623
    990403 9hs3:D (3.4) BS02 0O2 N/A GO:0005829 ... P0ADR8 41197623
    990404 9hs3:D (3.4) BS03 0O2 N/A GO:0005829 ... P0ADR8 41197623
    990405 9hs4:A (1.66) BS01 HEC N/A N/A G1UBD9 40822104
    990406 9hs4:B (1.66) BS01 HEC N/A N/A G1UBD9 40822104
    990407 9hs6:A (1.77) BS01 HEC N/A N/A G1UBD9 40822104
    990408 9hs6:B (1.77) BS01 HEC N/A N/A G1UBD9 40822104
    990409 9hs8:A (1.85) BS01 HEC N/A N/A G1UBD5 40843530
    990410 9hs8:A (1.85) BS02 NO N/A N/A G1UBD5 40843530
    990411 9hs8:B (1.85) BS01 HEC N/A N/A G1UBD5 40843530
    990412 9hs8:B (1.85) BS02 ZN N/A N/A G1UBD5 40843530
    990413 9hs8:B (1.85) BS03 NO N/A N/A G1UBD5 40843530
    990414 9hs9:A (1.28) BS01 HEC N/A N/A G1UBD9 40822104
    990415 9hs9:B (1.28) BS01 HEC N/A N/A G1UBD9 40822104
    990416 9hsb:A (1.81) BS01 A1IWR N/A GO:0003824 ... P49587 N/A
    990417 9hsb:A (1.81) BS02 A1IWR N/A GO:0003824 ... P49587 N/A
    990418 9hsc:A (2.18) BS01 AEF N/A GO:0003824 ... P49587 N/A
    990419 9hsd:A (2.18) BS01 NNW N/A GO:0003824 ... P49587 N/A
    990420 9hsd:A (2.18) BS02 NNW N/A GO:0003824 ... P49587 N/A
    990421 9hse:A (1.96) BS01 A1IWU N/A GO:0003824 ... P49587 N/A
    990422 9hsf:A (2.1) BS01 A1IWT N/A GO:0003824 ... P49587 N/A
    990423 9hsg:A (2.36) BS01 CDC N/A GO:0003824 ... P49587 N/A
    990424 9hsh:A (1.8) BS01 CTP N/A GO:0003824 ... P49587 N/A
    990425 9hsh:A (1.8) BS02 MN N/A GO:0003824 ... P49587 N/A
    990426 9hsi:A (1.97) BS01 PC N/A GO:0003824 ... P49587 N/A
    990427 9hsj:A (1.76) BS01 A1IWV N/A GO:0003824 ... P49587 N/A
    990428 9hsj:A (1.76) BS02 A1IWV N/A GO:0003824 ... P49587 N/A
    990429 9hsk:A (2.15) BS01 T5Y N/A GO:0003824 ... P49587 N/A
    990430 9hsl:A (2.15) BS01 S3V N/A GO:0003824 ... P49587 N/A
    990431 9hsm:A (2.05) BS01 A1IWW N/A GO:0003824 ... P49587 N/A
    990432 9hsn:A (2.09) BS01 9L6 N/A GO:0003824 ... P49587 N/A
    990433 9hso:A (2.3) BS01 0PY N/A GO:0003824 ... P49587 N/A
    990434 9hsp:A (2.09) BS01 9OI N/A GO:0003824 ... P49587 N/A
    990435 9hsp:A (2.09) BS02 9OI N/A GO:0003824 ... P49587 N/A
    990436 9hsq:A (1.77) BS01 9NN N/A GO:0003824 ... P49587 N/A
    990437 9hsq:A (1.77) BS02 9NN N/A GO:0003824 ... P49587 N/A
    990438 9hsr:A (2.42) BS01 XFV N/A GO:0003824 ... P49587 N/A
    990439 9hsr:A (2.42) BS02 XFV N/A GO:0003824 ... P49587 N/A
    990440 9hss:A (1.78) BS01 9OX N/A GO:0003824 ... P49587 N/A
    990441 9hss:A (1.78) BS02 9OX N/A GO:0003824 ... P49587 N/A
    990442 9hss:A (1.78) BS03 9OX N/A GO:0003824 ... P49587 N/A
    990443 9hst:A (2.39) BS01 XJJ N/A GO:0003824 ... P49587 N/A
    990444 9hsu:A (1.95) BS01 XHD N/A GO:0003824 ... P49587 N/A
    990445 9hsv:A (1.68) BS01 IRU N/A GO:0003824 ... P49587 N/A
    990446 9hsv:A (1.68) BS02 IRU N/A GO:0003824 ... P49587 N/A
    990447 9hsv:A (1.68) BS03 IRU N/A GO:0003824 ... P49587 N/A
    990448 9hsw:A (1.76) BS01 A1IWS N/A GO:0003824 ... P49587 N/A
    990449 9hsx:A (2.23) BS01 HVK N/A GO:0003824 ... P49587 N/A
    990450 9hsx:A (2.23) BS02 HVK N/A GO:0003824 ... P49587 N/A
    990451 9hsy:A (2.1) BS01 BYZ N/A GO:0003824 ... P49587 N/A
    990452 9hsz:A (1.96) BS01 4AP N/A GO:0003824 ... P49587 N/A
    990453 9hsz:A (1.96) BS02 4AP N/A GO:0003824 ... P49587 N/A
    990454 9hsz:A (1.96) BS03 4AP N/A GO:0003824 ... P49587 N/A
    990455 9ht0:A (1.33) BS01 A1IXD N/A N/A O60885 40750916
    990456 9ht1:B (1.94) BS01 A1IXE N/A N/A O60885 40750916
    990457 9ht2:A (1.42) BS01 A1IXF N/A N/A O60885 40750916
    990458 9ht3:A (1.8) BS01 ITN N/A GO:0015740 ... Q9I561 40891131
    990459 9ht3:B (1.8) BS01 ITN N/A GO:0015740 ... Q9I561 40891131
    990460 9ht5:A (2.14) BS01 NTA N/A N/A A0A085U4N5 N/A
    990461 9ht5:B (2.14) BS01 NTA N/A N/A A0A085U4N5 N/A
    990462 9ht5:C (2.14) BS01 NTA N/A N/A A0A085U4N5 N/A
    990463 9ht8:A (2.15) BS01 peptide N/A N/A P13674 40386874
    990464 9ht8:B (2.15) BS01 peptide N/A N/A P13674 40386874
    990465 9ht9:A (1.84) BS01 A1IXC N/A GO:0005829 ... Q30W70 41614677
    990466 9ht9:B (1.84) BS01 A1IXC N/A GO:0005829 ... Q30W70 41614677
    990467 9ht9:C (1.84) BS01 A1IXC N/A GO:0005829 ... Q30W70 41614677
    990468 9ht9:D (1.84) BS01 A1IXC N/A GO:0005829 ... Q30W70 41614677
    990469 9hta:A (2.17) BS01 NGT N/A GO:0004553 ... A0A075LPR4 40019001
    990470 9htb:A (1.584) BS01 A1IXB N/A GO:0005829 ... Q30W70 41614677
    990471 9htb:B (1.584) BS01 A1IXB N/A GO:0005829 ... Q30W70 41614677
    990472 9htb:C (1.584) BS01 A1IXB N/A GO:0005829 ... Q30W70 41614677
    990473 9htb:D (1.584) BS01 A1IXB N/A GO:0005829 ... Q30W70 41614677
    990474 9htc:A (1.8) BS01 HEC N/A N/A G1UBD5 40843530
    990475 9htc:A (1.8) BS02 NO N/A N/A G1UBD5 40843530
    990476 9htc:B (1.8) BS01 HEC N/A N/A G1UBD5 40843530
    990477 9htc:B (1.8) BS02 ZN N/A N/A G1UBD5 40843530
    990478 9htc:B (1.8) BS03 NO N/A N/A G1UBD5 40843530
    990479 9htd:A (1.751) BS01 peptide N/A N/A O15460 40386874
    990480 9htd:A (1.751) BS02 GLY N/A N/A O15460 40386874
    990481 9htd:A (1.751) BS03 GLY N/A N/A O15460 40386874
    990482 9htf:A (2.481) BS01 MG N/A GO:0003774 ... P12883 41034214
    990483 9htf:A (2.481) BS02 ADP N/A GO:0003774 ... P12883 41034214
    990484 9htg:A (2.596) BS01 MG N/A GO:0003774 ... P12883 41034214
    990485 9htg:A (2.596) BS02 ADP N/A GO:0003774 ... P12883 41034214
    990486 9hti:A (1.17) BS01 A1IXJ N/A GO:0003796 ... P00698 41531762
    990487 9htj:A (1.49) BS01 A1IXK N/A GO:0003796 ... P00698 41531762
    990488 9htk:A (1.49) BS01 ZN N/A N/A A4TVL0 41086529
    990489 9htk:A (1.49) BS02 A1IXA N/A N/A A4TVL0 41086529
    990490 9htk:B (1.49) BS01 ZN N/A N/A A4TVL0 41086529
    990491 9htk:B (1.49) BS02 A1I4R N/A N/A A4TVL0 41086529
    990492 9htk:C (1.49) BS01 ZN N/A N/A A4TVL0 41086529
    990493 9htk:C (1.49) BS02 A1IXA N/A N/A A4TVL0 41086529
    990494 9htl:A (1.74) BS01 ZN N/A N/A A4TVL0 41086529
    990495 9htl:A (1.74) BS02 A1IW9 N/A N/A A4TVL0 41086529
    990496 9htl:B (1.74) BS01 ZN N/A N/A A4TVL0 41086529
    990497 9htl:B (1.74) BS02 A1IW9 N/A N/A A4TVL0 41086529
    990498 9htl:C (1.74) BS01 ZN N/A N/A A4TVL0 41086529
    990499 9htm:A (1.85) BS01 ZN N/A N/A A4TVL0 41086529
    990500 9htm:A (1.85) BS02 A1IW8 N/A N/A A4TVL0 41086529
    990501 9htm:B (1.85) BS01 ZN N/A N/A A4TVL0 41086529
    990502 9htm:B (1.85) BS02 A1IW8 N/A N/A A4TVL0 41086529
    990503 9htm:C (1.85) BS01 ZN N/A N/A A4TVL0 41086529
    990504 9htm:C (1.85) BS02 A1I4P N/A N/A A4TVL0 41086529
    990505 9htn:A (1.92) BS01 ZN N/A N/A A4TVL0 41086529
    990506 9htn:A (1.92) BS02 A1IW7 N/A N/A A4TVL0 41086529
    990507 9htn:B (1.92) BS01 ZN N/A N/A A4TVL0 41086529
    990508 9htn:B (1.92) BS02 A1I4Q N/A N/A A4TVL0 41086529
    990509 9htn:C (1.92) BS01 ZN N/A N/A A4TVL0 41086529
    990510 9htn:C (1.92) BS02 A1I4Q N/A N/A A4TVL0 41086529
    990511 9hto:A (1.85) BS01 ZN N/A N/A A4TVL0 41086529
    990512 9hto:A (1.85) BS02 A1IW6 N/A N/A A4TVL0 41086529
    990513 9hto:B (1.85) BS01 ZN N/A N/A A4TVL0 41086529
    990514 9hto:B (1.85) BS02 A1IW6 N/A N/A A4TVL0 41086529
    990515 9hto:C (1.85) BS01 ZN N/A N/A A4TVL0 41086529
    990516 9hto:C (1.85) BS02 A1IW6 N/A N/A A4TVL0 41086529
    990517 9htp:A (2.35) BS01 ZN N/A N/A A4TVL0 41086529
    990518 9htp:B (2.35) BS01 ZN N/A N/A A4TVL0 41086529
    990519 9htp:B (2.35) BS02 A1IW5 N/A N/A A4TVL0 41086529
    990520 9htp:C (2.35) BS01 ZN N/A N/A A4TVL0 41086529
    990521 9htq:A (1.63) BS01 ZN N/A N/A A4TVL0 41086529
    990522 9htq:A (1.63) BS02 A1IW4 N/A N/A A4TVL0 41086529
    990523 9htq:B (1.63) BS01 ZN N/A N/A A4TVL0 41086529
    990524 9htq:B (1.63) BS02 A1IW4 N/A N/A A4TVL0 41086529
    990525 9htq:C (1.63) BS01 ZN N/A N/A A4TVL0 41086529
    990526 9htq:C (1.63) BS02 A1IW4 N/A N/A A4TVL0 41086529
    990527 9htr:A (2.25) BS01 A1IU3 N/A GO:0000413 ... P30405 41208336
    990528 9htt:A (1.75) BS01 HEC N/A N/A G1UBD5 40843530
    990529 9htt:A (1.75) BS02 NO N/A N/A G1UBD5 40843530
    990530 9htt:B (1.75) BS01 HEC N/A N/A G1UBD5 40843530
    990531 9htt:B (1.75) BS02 NO N/A N/A G1UBD5 40843530
    990532 9htu:A (1.8) BS01 ZN N/A GO:0008745 ... S4U9Y8 40441534
    990533 9htv:A (1.8) BS01 HEC N/A N/A G1UBD5 40843530
    990534 9htv:A (1.8) BS02 NO N/A N/A G1UBD5 40843530
    990535 9htv:B (1.8) BS01 HEC N/A N/A G1UBD5 40843530
    990536 9htv:B (1.8) BS02 NO N/A N/A G1UBD5 40843530
    990537 9hu1:A (2.151) BS01 HEC N/A N/A G1UBD5 40843530
    990538 9hu1:B (2.151) BS01 HEC N/A N/A G1UBD5 40843530
    990539 9hu1:B (2.151) BS02 ZN N/A N/A G1UBD5 40843530
    990540 9hu3:A (3.16) BS01 dna N/A GO:0003911 ... A0A1S6KUY4 N/A
    990541 9hu3:A (3.16) BS02 dna N/A GO:0003911 ... A0A1S6KUY4 N/A
    990542 9hu3:A (3.16) BS03 NMN N/A GO:0003911 ... A0A1S6KUY4 N/A
    990543 9hu3:A (3.16) BS04 AMP N/A GO:0003911 ... A0A1S6KUY4 N/A
    990544 9hu3:B (3.16) BS01 dna N/A GO:0016874 ... A0A1S6KUZ6 N/A
    990545 9hu3:B (3.16) BS02 dna N/A GO:0016874 ... A0A1S6KUZ6 N/A
    990546 9hu3:B (3.16) BS03 ZN N/A GO:0016874 ... A0A1S6KUZ6 N/A
    990547 9hu3:E (3.16) BS01 dna N/A GO:0003911 ... A0A1S6KUY4 N/A
    990548 9hu3:E (3.16) BS02 dna N/A GO:0003911 ... A0A1S6KUY4 N/A
    990549 9hu3:E (3.16) BS03 NMN N/A GO:0003911 ... A0A1S6KUY4 N/A
    990550 9hu3:E (3.16) BS04 AMP N/A GO:0003911 ... A0A1S6KUY4 N/A
    990551 9hu3:F (3.16) BS01 dna N/A GO:0016874 ... A0A1S6KUZ6 N/A
    990552 9hu3:F (3.16) BS02 dna N/A GO:0016874 ... A0A1S6KUZ6 N/A
    990553 9hu3:F (3.16) BS03 ZN N/A GO:0016874 ... A0A1S6KUZ6 N/A
    990554 9hu5:A (3.7) BS01 peptide N/A GO:0003723 ... P11126 41512857
    990555 9hu5:B (3.7) BS01 peptide N/A GO:0003723 ... P11126 41512857
    990556 9hu7:A (3.51) BS01 CU N/A N/A Q9XAL8 N/A
    990557 9hu7:A (3.51) BS02 CU N/A N/A Q9XAL8 N/A
    990558 9hu8:A (1.48) BS01 A1IXV N/A GO:0000242 ... P63000 N/A
    990559 9hu9:A (2.4) BS01 UDP N/A GO:0008194 ... B3XPQ7 41190658
    990560 9hu9:B (2.4) BS01 UD1 N/A GO:0008194 ... B3XPQ7 41190658
    990561 9hu9:C (2.4) BS01 UD1 N/A GO:0008194 ... B3XPQ7 41190658
    990562 9hua:A (2.6) BS01 UDP N/A GO:0008194 ... B3XPQ7 41190658
    990563 9hua:B (2.6) BS01 UDP N/A GO:0008194 ... B3XPQ7 41190658
    990564 9hua:C (2.6) BS01 UDP N/A GO:0008194 ... B3XPQ7 41190658
    990565 9huc:A (2.403) BS01 XYP N/A N/A B1ZMF4 41720372
    990566 9huc:A (2.403) BS02 XYP N/A N/A B1ZMF4 41720372
    990567 9huc:A (2.403) BS03 GCV N/A N/A B1ZMF4 41720372
    990568 9hud:H (2.42) BS01 GLY N/A N/A N/A 41231946
    990569 9hud:I (2.42) BS01 GLY N/A N/A N/A 41231946
    990570 9hud:M (2.42) BS01 GLY N/A N/A N/A 41231946
    990571 9hue:A (2.49) BS01 A1EF1 N/A N/A N/A 41332641
    990572 9hue:A (2.49) BS02 Y01 N/A N/A N/A 41332641
    990573 9hue:A (2.49) BS03 CLR N/A N/A N/A 41332641
    990574 9hue:A (2.49) BS04 Y01 N/A N/A N/A 41332641
    990575 9huf:A (2.79) BS01 A1IXX N/A N/A N/A 41332641
    990576 9huf:A (2.79) BS02 CLR N/A N/A N/A 41332641
    990577 9huf:A (2.79) BS03 Y01 N/A N/A N/A 41332641
    990578 9hug:A (2.97) BS01 CLR N/A N/A N/A 41698908
    990579 9hug:A (2.97) BS02 CLR N/A N/A N/A 41698908
    990580 9huh:A (2.96) BS01 CA N/A GO:0004668 ... Q9UM07 41166417
    990581 9huh:A (2.96) BS02 CA N/A GO:0004668 ... Q9UM07 41166417
    990582 9huh:B (2.96) BS01 CA N/A GO:0004668 ... Q9UM07 41166417
    990583 9huh:B (2.96) BS02 CA N/A GO:0004668 ... Q9UM07 41166417
    990584 9huk:A (3.5) BS01 A1IXL N/A GO:0001837 ... P49841 40639291
    990585 9huk:B (3.5) BS01 A1IXL N/A GO:0001837 ... P49841 40639291
    990586 9hul:A (2.9) BS01 A1IXM N/A GO:0001837 ... P49841 40639291
    990587 9hul:B (2.9) BS01 A1IXM N/A GO:0001837 ... P49841 40639291
    990588 9hum:B (3.35) BS01 ABU N/A GO:0006091 ... P28472
    P42212
    N/A
    990589 9hum:E (3.35) BS01 ABU N/A GO:0006091 ... P28472
    P42212
    N/A
    990590 9hup:A (1.76) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990591 9hup:A (1.76) BS02 A1IXO N/A GO:0047040 ... O76290 41026998
    990592 9hup:B (1.76) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990593 9hup:B (1.76) BS02 A1IXO N/A GO:0047040 ... O76290 41026998
    990594 9hup:C (1.76) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990595 9hup:D (1.76) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990596 9hup:D (1.76) BS02 A1IXO N/A GO:0047040 ... O76290 41026998
    990597 9huq:0 (2.49) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    990598 9huq:1 (2.49) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    990599 9huq:2 (2.49) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    990600 9huq:3 (2.49) BS01 rna N/A GO:0000027 ... P0A7N4 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).