SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    990601 9huq:4 (2.49) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    990602 9huq:6 (2.49) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    990603 9huq:7 (2.49) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    990604 9huq:8 (2.49) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    990605 9huq:c (2.49) BS01 rna N/A GO:0000027 ... P60422 N/A
    990606 9huq:d (2.49) BS01 rna N/A GO:0000027 ... P60438 N/A
    990607 9huq:e (2.49) BS01 rna N/A GO:0001070 ... P60723 N/A
    990608 9huq:f (2.49) BS01 rna N/A GO:0000027 ... P62399 N/A
    990609 9huq:f (2.49) BS02 rna N/A GO:0000027 ... P62399 N/A
    990610 9huq:g (2.49) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    990611 9huq:h (2.49) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    990612 9huq:j (2.49) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    990613 9huq:k (2.49) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    990614 9huq:l (2.49) BS01 rna N/A GO:0002181 ... P02413 N/A
    990615 9huq:m (2.49) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    990616 9huq:m (2.49) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    990617 9huq:n (2.49) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    990618 9huq:o (2.49) BS01 rna N/A GO:0002181 ... P0C018 N/A
    990619 9huq:o (2.49) BS02 rna N/A GO:0002181 ... P0C018 N/A
    990620 9huq:p (2.49) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    990621 9huq:q (2.49) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    990622 9huq:r (2.49) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    990623 9huq:s (2.49) BS01 rna N/A GO:0002181 ... P61175 N/A
    990624 9huq:t (2.49) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    990625 9huq:u (2.49) BS01 rna N/A GO:0000027 ... P60624 N/A
    990626 9huq:w (2.49) BS01 rna N/A GO:0000027 ... P68919 N/A
    990627 9huq:w (2.49) BS02 rna N/A GO:0000027 ... P68919 N/A
    990628 9huq:y (2.49) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    990629 9huq:y (2.49) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    990630 9huq:y (2.49) BS03 rna N/A GO:0000027 ... P0A7L8 N/A
    990631 9hus:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    990632 9hus:1 (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    990633 9hus:2 (2.4) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    990634 9hus:3 (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    990635 9hus:4 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    990636 9hus:6 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    990637 9hus:7 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    990638 9hus:8 (2.4) BS01 rna N/A GO:0005737 ... A0A2X1PTA3 N/A
    990639 9hus:c (2.4) BS01 rna N/A GO:0000027 ... P60422 N/A
    990640 9hus:d (2.4) BS01 rna N/A GO:0000027 ... P60438 N/A
    990641 9hus:e (2.4) BS01 rna N/A GO:0001070 ... P60723 N/A
    990642 9hus:f (2.4) BS01 rna N/A GO:0000027 ... P62399 N/A
    990643 9hus:f (2.4) BS02 rna N/A GO:0000027 ... P62399 N/A
    990644 9hus:f (2.4) BS03 rna N/A GO:0000027 ... P62399 N/A
    990645 9hus:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    990646 9hus:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    990647 9hus:j (2.4) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    990648 9hus:k (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    990649 9hus:l (2.4) BS01 rna N/A GO:0002181 ... P02413 N/A
    990650 9hus:m (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    990651 9hus:m (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    990652 9hus:n (2.4) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    990653 9hus:o (2.4) BS01 rna N/A GO:0002181 ... P0C018 N/A
    990654 9hus:o (2.4) BS02 rna N/A GO:0002181 ... P0C018 N/A
    990655 9hus:p (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    990656 9hus:q (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    990657 9hus:r (2.4) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    990658 9hus:s (2.4) BS01 rna N/A GO:0002181 ... P61175 N/A
    990659 9hus:s (2.4) BS02 peptide N/A GO:0002181 ... P61175 N/A
    990660 9hus:t (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    990661 9hus:u (2.4) BS01 rna N/A GO:0000027 ... P60624 N/A
    990662 9hus:w (2.4) BS01 rna N/A GO:0000027 ... P68919 N/A
    990663 9hus:w (2.4) BS02 rna N/A GO:0000027 ... P68919 N/A
    990664 9hus:y (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    990665 9hus:y (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    990666 9hus:y (2.4) BS03 rna N/A GO:0000027 ... P0A7L8 N/A
    990667 9hut:A (1.84) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990668 9hut:A (1.84) BS02 A1IXP N/A GO:0047040 ... O76290 41026998
    990669 9hut:B (1.84) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990670 9hut:B (1.84) BS02 A1IXP N/A GO:0047040 ... O76290 41026998
    990671 9hut:C (1.84) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990672 9hut:C (1.84) BS02 A1IXP N/A GO:0047040 ... O76290 41026998
    990673 9hut:D (1.84) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990674 9hut:D (1.84) BS02 A1IXP N/A GO:0047040 ... O76290 41026998
    990675 9huu:A (1.85) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990676 9huu:A (1.85) BS02 A1IXQ N/A GO:0047040 ... O76290 41026998
    990677 9huu:B (1.85) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990678 9huu:B (1.85) BS02 A1IXQ N/A GO:0047040 ... O76290 41026998
    990679 9huu:C (1.85) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990680 9huu:D (1.85) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990681 9huu:D (1.85) BS02 A1IXQ N/A GO:0047040 ... O76290 41026998
    990682 9huv:A (1.58) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990683 9huv:A (1.58) BS02 A1IXS N/A GO:0047040 ... O76290 41026998
    990684 9huv:B (1.58) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990685 9huv:B (1.58) BS02 A1IXS N/A GO:0047040 ... O76290 41026998
    990686 9huv:C (1.58) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990687 9huv:D (1.58) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990688 9huv:D (1.58) BS02 A1IXS N/A GO:0047040 ... O76290 41026998
    990689 9huw:A (1.8) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990690 9huw:A (1.8) BS02 A1IXR N/A GO:0047040 ... O76290 41026998
    990691 9huw:B (1.8) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990692 9huw:B (1.8) BS02 A1IXR N/A GO:0047040 ... O76290 41026998
    990693 9huw:C (1.8) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990694 9huw:D (1.8) BS01 NDP N/A GO:0047040 ... O76290 41026998
    990695 9huw:D (1.8) BS02 A1IXR N/A GO:0047040 ... O76290 41026998
    990696 9hux:A (3.88) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990697 9hux:B (3.88) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990698 9hux:C (3.88) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990699 9hux:D (3.88) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990700 9huy:A (3.54) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990701 9huy:B (3.54) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990702 9huy:C (3.54) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990703 9huy:D (3.54) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990704 9huz:A (3.57) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990705 9huz:B (3.57) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990706 9huz:C (3.57) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990707 9huz:D (3.57) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990708 9hv3:A (2.9) BS01 A1IXN N/A GO:0001837 ... P49841 40639291
    990709 9hv3:B (2.9) BS01 A1IXN N/A GO:0001837 ... P49841 40639291
    990710 9hv4:A (2.95) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990711 9hv5:A (3.12) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990712 9hv6:A (2.63) BS01 NAD N/A GO:0004352 ... A0R1C2 N/A
    990713 9hv9:H (1.8) BS01 peptide N/A N/A N/A N/A
    990714 9hv9:H (1.8) BS02 MG N/A N/A N/A N/A
    990715 9hv9:L (1.8) BS01 peptide N/A N/A N/A N/A
    990716 9hva:B (3.89) BS01 peptide N/A N/A N/A N/A
    990717 9hva:C (3.89) BS01 peptide N/A N/A N/A N/A
    990718 9hva:E (3.89) BS01 peptide N/A N/A N/A N/A
    990719 9hva:F (3.89) BS01 peptide N/A N/A N/A N/A
    990720 9hva:H (3.89) BS01 peptide N/A N/A N/A N/A
    990721 9hva:I (3.89) BS01 peptide N/A N/A N/A N/A
    990722 9hva:J (3.89) BS01 peptide N/A N/A N/A N/A
    990723 9hva:L (3.89) BS01 peptide N/A N/A N/A N/A
    990724 9hva:M (3.89) BS01 peptide N/A N/A N/A N/A
    990725 9hva:N (3.89) BS01 peptide N/A N/A N/A N/A
    990726 9hva:P (3.89) BS01 peptide N/A N/A N/A N/A
    990727 9hva:Q (3.89) BS01 peptide N/A N/A N/A N/A
    990728 9hve:E (2.7) BS01 GTP N/A GO:0002183 ... Q9NR50 41231936
    990729 9hve:F (2.7) BS01 GTP N/A GO:0002183 ... Q9NR50 41231936
    990730 9hve:O (2.7) BS01 peptide N/A GO:0000049 ... P41091 41231936
    990731 9hve:P (2.7) BS01 peptide N/A GO:0000049 ... P41091 41231936
    990732 9hvf:B (3.8) BS01 peptide N/A GO:0000423 ... P05198 41231936
    990733 9hvf:D (3.8) BS01 peptide N/A GO:0000049 ... P41091 41231936
    990734 9hvf:D (3.8) BS02 peptide N/A GO:0000049 ... P41091 41231936
    990735 9hvf:E (3.8) BS01 peptide N/A GO:0002183 ... Q9NR50 41231936
    990736 9hvi:A (2.46) BS01 MAN N/A GO:0004180 ... Q04609 40609945
    990737 9hvi:A (2.46) BS02 ZN N/A GO:0004180 ... Q04609 40609945
    990738 9hvi:A (2.46) BS03 ZN N/A GO:0004180 ... Q04609 40609945
    990739 9hvi:A (2.46) BS04 CA N/A GO:0004180 ... Q04609 40609945
    990740 9hvi:E (2.46) BS01 ZN N/A GO:0004180 ... Q04609 40609945
    990741 9hvi:E (2.46) BS02 ZN N/A GO:0004180 ... Q04609 40609945
    990742 9hvi:E (2.46) BS03 CA N/A GO:0004180 ... Q04609 40609945
    990743 9hvj:A (1.46) BS01 URA N/A N/A C7GAN4 39990360
    990744 9hvk:A (3.0) BS01 ZN N/A GO:0004180 ... Q04609 40609945
    990745 9hvk:A (3.0) BS02 ZN N/A GO:0004180 ... Q04609 40609945
    990746 9hvk:A (3.0) BS03 CA N/A GO:0004180 ... Q04609 40609945
    990747 9hvk:E (3.0) BS01 MAN N/A GO:0004180 ... Q04609 40609945
    990748 9hvk:E (3.0) BS02 ZN N/A GO:0004180 ... Q04609 40609945
    990749 9hvk:E (3.0) BS03 ZN N/A GO:0004180 ... Q04609 40609945
    990750 9hvk:E (3.0) BS04 CA N/A GO:0004180 ... Q04609 40609945
    990751 9hvl:A (2.71) BS01 MAN N/A GO:0004180 ... Q04609 40609945
    990752 9hvl:A (2.71) BS02 ZN N/A GO:0004180 ... Q04609 40609945
    990753 9hvl:A (2.71) BS03 ZN N/A GO:0004180 ... Q04609 40609945
    990754 9hvl:A (2.71) BS04 CA N/A GO:0004180 ... Q04609 40609945
    990755 9hvl:E (2.71) BS01 ZN N/A GO:0004180 ... Q04609 40609945
    990756 9hvl:E (2.71) BS02 ZN N/A GO:0004180 ... Q04609 40609945
    990757 9hvl:E (2.71) BS03 CA N/A GO:0004180 ... Q04609 40609945
    990758 9hvo:A (2.8) BS01 dna N/A GO:0001172 ... A0A8D1DPV6 40624163
    990759 9hvo:A (2.8) BS02 rna N/A GO:0001172 ... A0A8D1DPV6 40624163
    990760 9hvo:A (2.8) BS03 dna N/A GO:0001172 ... A0A8D1DPV6 40624163
    990761 9hvo:A (2.8) BS04 ZN N/A GO:0001172 ... A0A8D1DPV6 40624163
    990762 9hvo:A (2.8) BS05 ZN N/A GO:0001172 ... A0A8D1DPV6 40624163
    990763 9hvo:A (2.8) BS06 MG N/A GO:0001172 ... A0A8D1DPV6 40624163
    990764 9hvo:B (2.8) BS01 dna N/A GO:0001172 ... A0A0B8RVL1 40624163
    990765 9hvo:B (2.8) BS02 rna N/A GO:0001172 ... A0A0B8RVL1 40624163
    990766 9hvo:B (2.8) BS03 dna N/A GO:0001172 ... A0A0B8RVL1 40624163
    990767 9hvo:B (2.8) BS04 ZN N/A GO:0001172 ... A0A0B8RVL1 40624163
    990768 9hvo:C (2.8) BS01 ZN N/A GO:0003677 ... I3LCH3 40624163
    990769 9hvo:E (2.8) BS01 dna N/A GO:0003677 ... I3LSI7 40624163
    990770 9hvo:I (2.8) BS01 ZN N/A GO:0001193 ... P60899 40624163
    990771 9hvo:I (2.8) BS02 ZN N/A GO:0001193 ... P60899 40624163
    990772 9hvo:J (2.8) BS01 ZN N/A GO:0003677 ... A0A4X1VYD0 40624163
    990773 9hvo:L (2.8) BS01 ZN N/A GO:0001650 ... A0A4X1TRS6 40624163
    990774 9hvp:A (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P12497 2200122
    990775 9hvp:B (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P12497 2200122
    990776 9hvq:A (2.0) BS01 dna N/A GO:0001172 ... A0A8D1DPV6 40624163
    990777 9hvq:A (2.0) BS02 rna N/A GO:0001172 ... A0A8D1DPV6 40624163
    990778 9hvq:A (2.0) BS03 dna N/A GO:0001172 ... A0A8D1DPV6 40624163
    990779 9hvq:A (2.0) BS04 ZN N/A GO:0001172 ... A0A8D1DPV6 40624163
    990780 9hvq:A (2.0) BS05 ZN N/A GO:0001172 ... A0A8D1DPV6 40624163
    990781 9hvq:A (2.0) BS06 MG N/A GO:0001172 ... A0A8D1DPV6 40624163
    990782 9hvq:B (2.0) BS01 dna N/A GO:0001172 ... A0A0B8RVL1 40624163
    990783 9hvq:B (2.0) BS02 rna N/A GO:0001172 ... A0A0B8RVL1 40624163
    990784 9hvq:B (2.0) BS03 dna N/A GO:0001172 ... A0A0B8RVL1 40624163
    990785 9hvq:B (2.0) BS04 ZN N/A GO:0001172 ... A0A0B8RVL1 40624163
    990786 9hvq:C (2.0) BS01 ZN N/A GO:0003677 ... I3LCH3 40624163
    990787 9hvq:E (2.0) BS01 dna N/A GO:0003677 ... I3LSI7 40624163
    990788 9hvq:I (2.0) BS01 ZN N/A GO:0001193 ... P60899 40624163
    990789 9hvq:I (2.0) BS02 ZN N/A GO:0001193 ... P60899 40624163
    990790 9hvq:J (2.0) BS01 ZN N/A GO:0003677 ... A0A4X1VYD0 40624163
    990791 9hvq:L (2.0) BS01 ZN N/A GO:0001650 ... A0A4X1TRS6 40624163
    990792 9hvx:A (2.1) BS01 A1IYF N/A GO:0004672 ... A0A125YY75 41193440
    990793 9hvx:A (2.1) BS02 MG N/A GO:0004672 ... A0A125YY75 41193440
    990794 9hvx:A (2.1) BS03 MG N/A GO:0004672 ... A0A125YY75 41193440
    990795 9hvy:A (3.5) BS01 ZN N/A GO:0000070 ... O60216
    Q14674
    N/A
    990796 9hw6:A (2.9) BS01 A1IYF N/A GO:0000166 ... A0A125YY75 41193440
    990797 9hw6:B (2.9) BS01 A1IYF N/A GO:0000166 ... A0A125YY75 41193440
    990798 9hw6:D (2.9) BS01 A1IYF N/A GO:0000166 ... A0A125YY75 41193440
    990799 9hw6:F (2.9) BS01 A1IYF N/A GO:0000166 ... A0A125YY75 41193440
    990800 9hwf:A (1.4) BS01 FE N/A GO:0005829 ... P05326 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).