SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    991001 9hym:s (2.2) BS01 peptide N/A GO:0002181 ... P61175 N/A
    991002 9hym:s (2.2) BS02 rna N/A GO:0002181 ... P61175 N/A
    991003 9hym:t (2.2) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    991004 9hym:u (2.2) BS01 rna N/A GO:0000027 ... P60624 N/A
    991005 9hym:w (2.2) BS01 rna N/A GO:0000027 ... P68919 N/A
    991006 9hym:w (2.2) BS02 rna N/A GO:0000027 ... P68919 N/A
    991007 9hym:y (2.2) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    991008 9hym:y (2.2) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    991009 9hym:y (2.2) BS03 rna N/A GO:0000027 ... P0A7L8 N/A
    991010 9hyn:C (2.37) BS01 A1IYO N/A N/A P40337 41022846
    991011 9hyn:F (2.37) BS01 A1IYO N/A N/A P40337 41022846
    991012 9hyn:G (2.37) BS01 A1IYO N/A GO:0006338 ... P51531 41022846
    991013 9hyn:H (2.37) BS01 A1IYO N/A GO:0006338 ... P51531 41022846
    991014 9hyo:A (3.74) BS01 A1IYN N/A GO:0006338 ... P51531 41022846
    991015 9hyo:D (3.74) BS01 A1IYN N/A N/A P40337 41022846
    991016 9hyp:A (2.2) BS01 A1IYM N/A GO:0006338 ... P51531 41022846
    991017 9hyp:D (2.2) BS01 A1IYM N/A N/A P40337 41022846
    991018 9hyt:A (1.9) BS01 peptide N/A GO:0038023 ... Q6UXV0 41066664
    991019 9hyt:B (1.9) BS01 peptide N/A GO:0038023 ... Q6UXV0 41066664
    991020 9hyt:C (1.9) BS01 peptide N/A GO:0038023 ... Q6UXV0 41066664
    991021 9hyu:2 (1.84) BS01 FE N/A N/A A0A0G4FB02 41423677
    991022 9hyu:A (1.84) BS01 CLA N/A GO:0009535 ... D9IXI2 41423677
    991023 9hyu:A (1.84) BS02 CLA N/A GO:0009535 ... D9IXI2 41423677
    991024 9hyu:A (1.84) BS03 CLA N/A GO:0009535 ... D9IXI2 41423677
    991025 9hyu:A (1.84) BS04 CLA N/A GO:0009535 ... D9IXI2 41423677
    991026 9hyu:A (1.84) BS05 CLA N/A GO:0009535 ... D9IXI2 41423677
    991027 9hyu:A (1.84) BS06 CLA N/A GO:0009535 ... D9IXI2 41423677
    991028 9hyu:A (1.84) BS07 CL0 N/A GO:0009535 ... D9IXI2 41423677
    991029 9hyu:A (1.84) BS08 CLA N/A GO:0009535 ... D9IXI2 41423677
    991030 9hyu:A (1.84) BS09 CLA N/A GO:0009535 ... D9IXI2 41423677
    991031 9hyu:A (1.84) BS10 CLA N/A GO:0009535 ... D9IXI2 41423677
    991032 9hyu:A (1.84) BS11 CLA N/A GO:0009535 ... D9IXI2 41423677
    991033 9hyu:A (1.84) BS12 CLA N/A GO:0009535 ... D9IXI2 41423677
    991034 9hyu:A (1.84) BS13 CLA N/A GO:0009535 ... D9IXI2 41423677
    991035 9hyu:A (1.84) BS14 SF4 N/A GO:0009535 ... D9IXI2 41423677
    991036 9hyu:A (1.84) BS15 PQN N/A GO:0009535 ... D9IXI2 41423677
    991037 9hyu:A (1.84) BS16 CLA N/A GO:0009535 ... D9IXI2 41423677
    991038 9hyu:A (1.84) BS17 CLA N/A GO:0009535 ... D9IXI2 41423677
    991039 9hyu:A (1.84) BS18 CLA N/A GO:0009535 ... D9IXI2 41423677
    991040 9hyu:A (1.84) BS19 CLA N/A GO:0009535 ... D9IXI2 41423677
    991041 9hyu:A (1.84) BS20 CLA N/A GO:0009535 ... D9IXI2 41423677
    991042 9hyu:A (1.84) BS21 CLA N/A GO:0009535 ... D9IXI2 41423677
    991043 9hyu:A (1.84) BS22 CLA N/A GO:0009535 ... D9IXI2 41423677
    991044 9hyu:A (1.84) BS23 CLA N/A GO:0009535 ... D9IXI2 41423677
    991045 9hyu:A (1.84) BS24 CLA N/A GO:0009535 ... D9IXI2 41423677
    991046 9hyu:A (1.84) BS25 CLA N/A GO:0009535 ... D9IXI2 41423677
    991047 9hyu:B (1.84) BS01 CLA N/A GO:0009535 ... D9IXI4 41423677
    991048 9hyu:B (1.84) BS02 CL0 N/A GO:0009535 ... D9IXI4 41423677
    991049 9hyu:B (1.84) BS03 CLA N/A GO:0009535 ... D9IXI4 41423677
    991050 9hyu:B (1.84) BS04 CLA N/A GO:0009535 ... D9IXI4 41423677
    991051 9hyu:B (1.84) BS05 SF4 N/A GO:0009535 ... D9IXI4 41423677
    991052 9hyu:B (1.84) BS06 CLA N/A GO:0009535 ... D9IXI4 41423677
    991053 9hyu:B (1.84) BS07 CLA N/A GO:0009535 ... D9IXI4 41423677
    991054 9hyu:B (1.84) BS08 CLA N/A GO:0009535 ... D9IXI4 41423677
    991055 9hyu:B (1.84) BS09 CLA N/A GO:0009535 ... D9IXI4 41423677
    991056 9hyu:B (1.84) BS10 CLA N/A GO:0009535 ... D9IXI4 41423677
    991057 9hyu:B (1.84) BS11 CLA N/A GO:0009535 ... D9IXI4 41423677
    991058 9hyu:B (1.84) BS12 CLA N/A GO:0009535 ... D9IXI4 41423677
    991059 9hyu:B (1.84) BS13 CLA N/A GO:0009535 ... D9IXI4 41423677
    991060 9hyu:B (1.84) BS14 CLA N/A GO:0009535 ... D9IXI4 41423677
    991061 9hyu:B (1.84) BS15 CLA N/A GO:0009535 ... D9IXI4 41423677
    991062 9hyu:B (1.84) BS16 CLA N/A GO:0009535 ... D9IXI4 41423677
    991063 9hyu:B (1.84) BS17 CLA N/A GO:0009535 ... D9IXI4 41423677
    991064 9hyu:B (1.84) BS18 CLA N/A GO:0009535 ... D9IXI4 41423677
    991065 9hyu:B (1.84) BS19 CLA N/A GO:0009535 ... D9IXI4 41423677
    991066 9hyu:B (1.84) BS20 CLA N/A GO:0009535 ... D9IXI4 41423677
    991067 9hyu:B (1.84) BS21 CLA N/A GO:0009535 ... D9IXI4 41423677
    991068 9hyu:B (1.84) BS22 CLA N/A GO:0009535 ... D9IXI4 41423677
    991069 9hyu:B (1.84) BS23 CLA N/A GO:0009535 ... D9IXI4 41423677
    991070 9hyu:B (1.84) BS24 CLA N/A GO:0009535 ... D9IXI4 41423677
    991071 9hyu:B (1.84) BS25 CLA N/A GO:0009535 ... D9IXI4 41423677
    991072 9hyu:B (1.84) BS26 CLA N/A GO:0009535 ... D9IXI4 41423677
    991073 9hyu:B (1.84) BS27 CLA N/A GO:0009535 ... D9IXI4 41423677
    991074 9hyu:B (1.84) BS28 CLA N/A GO:0009535 ... D9IXI4 41423677
    991075 9hyu:B (1.84) BS29 CLA N/A GO:0009535 ... D9IXI4 41423677
    991076 9hyu:B (1.84) BS30 CLA N/A GO:0009535 ... D9IXI4 41423677
    991077 9hyu:B (1.84) BS31 CLA N/A GO:0009535 ... D9IXI4 41423677
    991078 9hyu:B (1.84) BS32 CLA N/A GO:0009535 ... D9IXI4 41423677
    991079 9hyu:B (1.84) BS33 CLA N/A GO:0009535 ... D9IXI4 41423677
    991080 9hyu:B (1.84) BS34 CLA N/A GO:0009535 ... D9IXI4 41423677
    991081 9hyu:B (1.84) BS35 PQN N/A GO:0009535 ... D9IXI4 41423677
    991082 9hyu:B (1.84) BS36 A1L6D N/A GO:0009535 ... D9IXI4 41423677
    991083 9hyu:B (1.84) BS37 A1I05 N/A GO:0009535 ... D9IXI4 41423677
    991084 9hyu:C (1.84) BS01 SF4 N/A GO:0016020 ... D9IXG0 41423677
    991085 9hyu:C (1.84) BS02 SF4 N/A GO:0016020 ... D9IXG0 41423677
    991086 9hyu:F (1.84) BS01 CLA N/A GO:0009538 ... A0A0G4GX86 41423677
    991087 9hyu:F (1.84) BS02 CLA N/A GO:0009538 ... A0A0G4GX86 41423677
    991088 9hyu:F (1.84) BS03 CLA N/A GO:0009538 ... A0A0G4GX86 41423677
    991089 9hyu:F (1.84) BS04 CLA N/A GO:0009538 ... A0A0G4GX86 41423677
    991090 9hyu:F (1.84) BS05 CLA N/A GO:0009538 ... A0A0G4GX86 41423677
    991091 9hyu:F (1.84) BS06 CLA N/A GO:0009538 ... A0A0G4GX86 41423677
    991092 9hyu:F (1.84) BS07 CLA N/A GO:0009538 ... A0A0G4GX86 41423677
    991093 9hyu:F (1.84) BS08 CLA N/A GO:0009538 ... A0A0G4GX86 41423677
    991094 9hyu:F (1.84) BS09 CLA N/A GO:0009538 ... A0A0G4GX86 41423677
    991095 9hyu:F (1.84) BS10 CLA N/A GO:0009538 ... A0A0G4GX86 41423677
    991096 9hyu:L (1.84) BS01 CLA N/A N/A A0A0G4GX71 41423677
    991097 9hyu:L (1.84) BS02 CLA N/A N/A A0A0G4GX71 41423677
    991098 9hyu:L (1.84) BS03 CLA N/A N/A A0A0G4GX71 41423677
    991099 9hyu:L (1.84) BS04 CLA N/A N/A A0A0G4GX71 41423677
    991100 9hyu:L (1.84) BS05 CLA N/A N/A A0A0G4GX71 41423677
    991101 9hyu:L (1.84) BS06 AV0 N/A N/A A0A0G4GX71 41423677
    991102 9hyu:L (1.84) BS07 CLA N/A N/A A0A0G4GX71 41423677
    991103 9hyu:L (1.84) BS08 CLA N/A N/A A0A0G4GX71 41423677
    991104 9hyu:R (1.84) BS01 CLA N/A N/A A0A0G4FDJ8 41423677
    991105 9hyu:R (1.84) BS02 CLA N/A N/A A0A0G4FDJ8 41423677
    991106 9hyu:a (1.84) BS01 CLA N/A N/A N/A 41423677
    991107 9hyu:a (1.84) BS02 CLA N/A N/A N/A 41423677
    991108 9hyu:a (1.84) BS03 CLA N/A N/A N/A 41423677
    991109 9hyu:a (1.84) BS04 CLA N/A N/A N/A 41423677
    991110 9hyu:a (1.84) BS05 CLA N/A N/A N/A 41423677
    991111 9hyu:a (1.84) BS06 CLA N/A N/A N/A 41423677
    991112 9hyu:a (1.84) BS07 CLA N/A N/A N/A 41423677
    991113 9hyu:a (1.84) BS08 CLA N/A N/A N/A 41423677
    991114 9hyu:a (1.84) BS09 CLA N/A N/A N/A 41423677
    991115 9hyu:a (1.84) BS10 CLA N/A N/A N/A 41423677
    991116 9hyu:a (1.84) BS11 CLA N/A N/A N/A 41423677
    991117 9hyu:a (1.84) BS12 CLA N/A N/A N/A 41423677
    991118 9hyu:a (1.84) BS13 CLA N/A N/A N/A 41423677
    991119 9hyu:b (1.84) BS01 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991120 9hyu:b (1.84) BS02 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991121 9hyu:b (1.84) BS03 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991122 9hyu:b (1.84) BS04 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991123 9hyu:b (1.84) BS05 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991124 9hyu:b (1.84) BS06 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991125 9hyu:b (1.84) BS07 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991126 9hyu:b (1.84) BS08 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991127 9hyu:b (1.84) BS09 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991128 9hyu:b (1.84) BS10 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991129 9hyu:b (1.84) BS11 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991130 9hyu:b (1.84) BS12 CLA N/A GO:0009507 ... A0A0G4ID45 41423677
    991131 9hyu:c (1.84) BS01 CLA N/A N/A A0A0G4FL36 41423677
    991132 9hyu:c (1.84) BS02 CLA N/A N/A A0A0G4FL36 41423677
    991133 9hyu:c (1.84) BS03 CLA N/A N/A A0A0G4FL36 41423677
    991134 9hyu:c (1.84) BS04 CLA N/A N/A A0A0G4FL36 41423677
    991135 9hyu:c (1.84) BS05 CLA N/A N/A A0A0G4FL36 41423677
    991136 9hyu:c (1.84) BS06 CLA N/A N/A A0A0G4FL36 41423677
    991137 9hyu:c (1.84) BS07 CLA N/A N/A A0A0G4FL36 41423677
    991138 9hyu:c (1.84) BS08 CLA N/A N/A A0A0G4FL36 41423677
    991139 9hyu:c (1.84) BS09 CLA N/A N/A A0A0G4FL36 41423677
    991140 9hyu:c (1.84) BS10 CLA N/A N/A A0A0G4FL36 41423677
    991141 9hyu:c (1.84) BS11 CLA N/A N/A A0A0G4FL36 41423677
    991142 9hyu:c (1.84) BS12 CLA N/A N/A A0A0G4FL36 41423677
    991143 9hyu:d (1.84) BS01 CLA N/A N/A A0A0G4HNB1 41423677
    991144 9hyu:d (1.84) BS02 CLA N/A N/A A0A0G4HNB1 41423677
    991145 9hyu:d (1.84) BS03 CLA N/A N/A A0A0G4HNB1 41423677
    991146 9hyu:d (1.84) BS04 CLA N/A N/A A0A0G4HNB1 41423677
    991147 9hyu:d (1.84) BS05 CLA N/A N/A A0A0G4HNB1 41423677
    991148 9hyu:d (1.84) BS06 CLA N/A N/A A0A0G4HNB1 41423677
    991149 9hyu:d (1.84) BS07 CLA N/A N/A A0A0G4HNB1 41423677
    991150 9hyu:d (1.84) BS08 CLA N/A N/A A0A0G4HNB1 41423677
    991151 9hyu:d (1.84) BS09 CLA N/A N/A A0A0G4HNB1 41423677
    991152 9hyu:d (1.84) BS10 A1L6D N/A N/A A0A0G4HNB1 41423677
    991153 9hyu:e (1.84) BS01 CLA N/A N/A A0A0G4HMN0 41423677
    991154 9hyu:e (1.84) BS02 CLA N/A N/A A0A0G4HMN0 41423677
    991155 9hyu:e (1.84) BS03 CLA N/A N/A A0A0G4HMN0 41423677
    991156 9hyu:e (1.84) BS04 CLA N/A N/A A0A0G4HMN0 41423677
    991157 9hyu:e (1.84) BS05 CLA N/A N/A A0A0G4HMN0 41423677
    991158 9hyu:e (1.84) BS06 CLA N/A N/A A0A0G4HMN0 41423677
    991159 9hyu:e (1.84) BS07 CLA N/A N/A A0A0G4HMN0 41423677
    991160 9hyu:e (1.84) BS08 CLA N/A N/A A0A0G4HMN0 41423677
    991161 9hyu:e (1.84) BS09 CLA N/A N/A A0A0G4HMN0 41423677
    991162 9hyu:e (1.84) BS10 A1L6D N/A N/A A0A0G4HMN0 41423677
    991163 9hyu:f (1.84) BS01 CLA N/A N/A A0A0G4I0G6 41423677
    991164 9hyu:f (1.84) BS02 CLA N/A N/A A0A0G4I0G6 41423677
    991165 9hyu:f (1.84) BS03 CLA N/A N/A A0A0G4I0G6 41423677
    991166 9hyu:f (1.84) BS04 CLA N/A N/A A0A0G4I0G6 41423677
    991167 9hyu:f (1.84) BS05 CLA N/A N/A A0A0G4I0G6 41423677
    991168 9hyu:f (1.84) BS06 CLA N/A N/A A0A0G4I0G6 41423677
    991169 9hyu:f (1.84) BS07 CLA N/A N/A A0A0G4I0G6 41423677
    991170 9hyu:f (1.84) BS08 CLA N/A N/A A0A0G4I0G6 41423677
    991171 9hyu:f (1.84) BS09 CLA N/A N/A A0A0G4I0G6 41423677
    991172 9hyu:f (1.84) BS10 CLA N/A N/A A0A0G4I0G6 41423677
    991173 9hyu:f (1.84) BS11 CLA N/A N/A A0A0G4I0G6 41423677
    991174 9hyu:f (1.84) BS12 A1L6D N/A N/A A0A0G4I0G6 41423677
    991175 9hyu:f (1.84) BS13 CLA N/A N/A A0A0G4I0G6 41423677
    991176 9hyv:A (1.67) BS01 HEM N/A GO:0004601 ... A0ABF7PHP1 40843530
    991177 9hyv:A (1.67) BS02 NO2 N/A GO:0004601 ... A0ABF7PHP1 40843530
    991178 9hyv:B (1.67) BS01 HEM N/A GO:0004601 ... A0ABF7PHP1 40843530
    991179 9hyv:B (1.67) BS02 NO2 N/A GO:0004601 ... A0ABF7PHP1 40843530
    991180 9hyv:C (1.67) BS01 HEM N/A GO:0004601 ... A0ABF7PHP1 40843530
    991181 9hyv:C (1.67) BS02 NO2 N/A GO:0004601 ... A0ABF7PHP1 40843530
    991182 9hyv:D (1.67) BS01 HEM N/A GO:0004601 ... A0ABF7PHP1 40843530
    991183 9hyv:D (1.67) BS02 NO2 N/A GO:0004601 ... A0ABF7PHP1 40843530
    991184 9hyv:E (1.67) BS01 HEM N/A GO:0004601 ... A0ABF7PHP1 40843530
    991185 9hyv:E (1.67) BS02 NO2 N/A GO:0004601 ... A0ABF7PHP1 40843530
    991186 9hyv:F (1.67) BS01 HEM N/A GO:0004601 ... A0ABF7PHP1 40843530
    991187 9hyv:F (1.67) BS02 NO2 N/A GO:0004601 ... A0ABF7PHP1 40843530
    991188 9hyx:A (2.3) BS01 FUC N/A GO:0004560 ... A0AB36XDR5 40286956
    991189 9hyx:B (2.3) BS01 FUC N/A GO:0004560 ... A0AB36XDR5 40286956
    991190 9hyx:C (2.3) BS01 FUC N/A GO:0004560 ... A0AB36XDR5 40286956
    991191 9hyx:D (2.3) BS01 FUC N/A GO:0004560 ... A0AB36XDR5 40286956
    991192 9hyx:E (2.3) BS01 FUC N/A GO:0004560 ... A0AB36XDR5 40286956
    991193 9hyx:F (2.3) BS01 FUC N/A GO:0004560 ... A0AB36XDR5 40286956
    991194 9hyz:A (2.2) BS01 HEC N/A N/A G1UBD5 40843530
    991195 9hyz:B (2.2) BS01 HEC N/A N/A G1UBD5 40843530
    991196 9hz0:A (2.25) BS01 A1IY7 N/A GO:0004672 ... O14733 40440538
    991197 9hz1:A (2.4) BS01 JFZ N/A GO:0004560 ... A0A0R1ZV46 40286956
    991198 9hz1:B (2.4) BS01 JFZ N/A GO:0004560 ... A0A0R1ZV46 40286956
    991199 9hz1:C (2.4) BS01 JFZ N/A GO:0004560 ... A0A0R1ZV46 40286956
    991200 9hz1:D (2.4) BS01 JFZ N/A GO:0004560 ... A0A0R1ZV46 40286956

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).