SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    991401 9i05:Am (2.2) BS04 rna N/A GO:0003735 ... A0A125YU12 39827269
    991402 9i05:Am (2.2) BS05 rna N/A GO:0003735 ... A0A125YU12 39827269
    991403 9i05:Am (2.2) BS06 rna N/A GO:0003735 ... A0A125YU12 39827269
    991404 9i05:Am (2.2) BS07 rna N/A GO:0003735 ... A0A125YU12 39827269
    991405 9i05:An (2.2) BS01 rna N/A GO:0003735 ... S8F9B8 39827269
    991406 9i05:An (2.2) BS02 rna N/A GO:0003735 ... S8F9B8 39827269
    991407 9i05:An (2.2) BS03 rna N/A GO:0003735 ... S8F9B8 39827269
    991408 9i05:An (2.2) BS04 rna N/A GO:0003735 ... S8F9B8 39827269
    991409 9i05:An (2.2) BS05 rna N/A GO:0003735 ... S8F9B8 39827269
    991410 9i05:An (2.2) BS06 rna N/A GO:0003735 ... S8F9B8 39827269
    991411 9i05:An (2.2) BS07 rna N/A GO:0003735 ... S8F9B8 39827269
    991412 9i05:Ao (2.2) BS01 rna N/A GO:0003735 ... S8F1I2 39827269
    991413 9i05:Ao (2.2) BS02 rna N/A GO:0003735 ... S8F1I2 39827269
    991414 9i05:Ao (2.2) BS03 rna N/A GO:0003735 ... S8F1I2 39827269
    991415 9i05:Ao (2.2) BS04 rna N/A GO:0003735 ... S8F1I2 39827269
    991416 9i05:Ao (2.2) BS05 rna N/A GO:0003735 ... S8F1I2 39827269
    991417 9i05:Ao (2.2) BS06 rna N/A GO:0003735 ... S8F1I2 39827269
    991418 9i05:Ao (2.2) BS07 rna N/A GO:0003735 ... S8F1I2 39827269
    991419 9i05:Ao (2.2) BS08 rna N/A GO:0003735 ... S8F1I2 39827269
    991420 9i05:Ao (2.2) BS09 rna N/A GO:0003735 ... S8F1I2 39827269
    991421 9i05:Ao (2.2) BS10 rna N/A GO:0003735 ... S8F1I2 39827269
    991422 9i05:Ap (2.2) BS01 rna N/A GO:0003735 ... A0A125YSK9 39827269
    991423 9i05:Ap (2.2) BS02 rna N/A GO:0003735 ... A0A125YSK9 39827269
    991424 9i05:Ap (2.2) BS03 rna N/A GO:0003735 ... A0A125YSK9 39827269
    991425 9i05:Ap (2.2) BS04 rna N/A GO:0003735 ... A0A125YSK9 39827269
    991426 9i05:Ap (2.2) BS05 rna N/A GO:0003735 ... A0A125YSK9 39827269
    991427 9i05:Aq (2.2) BS01 rna N/A GO:0003723 ... A0A125YTV4 39827269
    991428 9i05:Aq (2.2) BS02 rna N/A GO:0003723 ... A0A125YTV4 39827269
    991429 9i05:Aq (2.2) BS03 rna N/A GO:0003723 ... A0A125YTV4 39827269
    991430 9i05:Aq (2.2) BS04 rna N/A GO:0003723 ... A0A125YTV4 39827269
    991431 9i05:Ar (2.2) BS01 rna N/A GO:0003735 ... S8ER88 39827269
    991432 9i05:As (2.2) BS01 peptide N/A N/A S8GME4 39827269
    991433 9i05:As (2.2) BS02 rna N/A N/A S8GME4 39827269
    991434 9i05:As (2.2) BS03 rna N/A N/A S8GME4 39827269
    991435 9i05:As (2.2) BS04 rna N/A N/A S8GME4 39827269
    991436 9i05:As (2.2) BS05 rna N/A N/A S8GME4 39827269
    991437 9i05:As (2.2) BS06 rna N/A N/A S8GME4 39827269
    991438 9i05:As (2.2) BS07 rna N/A N/A S8GME4 39827269
    991439 9i05:At (2.2) BS01 peptide N/A GO:0003735 ... A0A125YXA5 39827269
    991440 9i05:At (2.2) BS02 rna N/A GO:0003735 ... A0A125YXA5 39827269
    991441 9i05:At (2.2) BS03 rna N/A GO:0003735 ... A0A125YXA5 39827269
    991442 9i05:At (2.2) BS04 rna N/A GO:0003735 ... A0A125YXA5 39827269
    991443 9i05:At (2.2) BS05 rna N/A GO:0003735 ... A0A125YXA5 39827269
    991444 9i05:At (2.2) BS06 rna N/A GO:0003735 ... A0A125YXA5 39827269
    991445 9i05:Au (2.2) BS01 rna N/A GO:0003735 ... A0A125YVS8 39827269
    991446 9i05:Au (2.2) BS02 rna N/A GO:0003735 ... A0A125YVS8 39827269
    991447 9i05:Au (2.2) BS03 rna N/A GO:0003735 ... A0A125YVS8 39827269
    991448 9i05:Au (2.2) BS04 rna N/A GO:0003735 ... A0A125YVS8 39827269
    991449 9i05:Av (2.2) BS01 rna N/A N/A A0A125YQ85 39827269
    991450 9i05:Av (2.2) BS02 rna N/A N/A A0A125YQ85 39827269
    991451 9i05:Av (2.2) BS03 rna N/A N/A A0A125YQ85 39827269
    991452 9i05:Av (2.2) BS04 rna N/A N/A A0A125YQ85 39827269
    991453 9i05:Av (2.2) BS05 rna N/A N/A A0A125YQ85 39827269
    991454 9i05:Aw (2.2) BS01 rna N/A GO:0003735 ... A0A125YRM7 39827269
    991455 9i05:Aw (2.2) BS02 rna N/A GO:0003735 ... A0A125YRM7 39827269
    991456 9i05:Aw (2.2) BS03 rna N/A GO:0003735 ... A0A125YRM7 39827269
    991457 9i05:Aw (2.2) BS04 rna N/A GO:0003735 ... A0A125YRM7 39827269
    991458 9i05:Aw (2.2) BS05 rna N/A GO:0003735 ... A0A125YRM7 39827269
    991459 9i05:Aw (2.2) BS06 rna N/A GO:0003735 ... A0A125YRM7 39827269
    991460 9i05:Ax (2.2) BS01 rna N/A N/A A0A125YU18 39827269
    991461 9i05:Ax (2.2) BS02 rna N/A N/A A0A125YU18 39827269
    991462 9i05:Ax (2.2) BS03 rna N/A N/A A0A125YU18 39827269
    991463 9i05:Ax (2.2) BS04 rna N/A N/A A0A125YU18 39827269
    991464 9i05:Ax (2.2) BS05 rna N/A N/A A0A125YU18 39827269
    991465 9i05:Ax (2.2) BS06 rna N/A N/A A0A125YU18 39827269
    991466 9i05:Ax (2.2) BS07 rna N/A N/A A0A125YU18 39827269
    991467 9i05:Ay (2.2) BS01 rna N/A N/A S8GJM3 39827269
    991468 9i05:Ay (2.2) BS02 rna N/A N/A S8GJM3 39827269
    991469 9i05:Ay (2.2) BS03 rna N/A N/A S8GJM3 39827269
    991470 9i05:Ay (2.2) BS04 rna N/A N/A S8GJM3 39827269
    991471 9i05:Ay (2.2) BS05 rna N/A N/A S8GJM3 39827269
    991472 9i05:Ay (2.2) BS06 ZN N/A N/A S8GJM3 39827269
    991473 9i05:Az (2.2) BS01 rna N/A N/A S8F2D4 39827269
    991474 9i05:XA (2.2) BS01 rna N/A N/A S8FAF6 39827269
    991475 9i05:XA (2.2) BS02 rna N/A N/A S8FAF6 39827269
    991476 9i05:XA (2.2) BS03 rna N/A N/A S8FAF6 39827269
    991477 9i05:XC (2.2) BS01 rna N/A N/A S8G3R6 39827269
    991478 9i05:XC (2.2) BS02 rna N/A N/A S8G3R6 39827269
    991479 9i05:XC (2.2) BS03 rna N/A N/A S8G3R6 39827269
    991480 9i05:XC (2.2) BS04 rna N/A N/A S8G3R6 39827269
    991481 9i05:XC (2.2) BS05 rna N/A N/A S8G3R6 39827269
    991482 9i05:XD (2.2) BS01 rna N/A N/A S8G7B2 39827269
    991483 9i05:XD (2.2) BS02 FES N/A N/A S8G7B2 39827269
    991484 9i05:XE (2.2) BS01 rna N/A N/A A0A125YZ59 39827269
    991485 9i05:XE (2.2) BS02 rna N/A N/A A0A125YZ59 39827269
    991486 9i05:XE (2.2) BS03 rna N/A N/A A0A125YZ59 39827269
    991487 9i05:XF (2.2) BS01 peptide N/A N/A A0A125YKH4 39827269
    991488 9i05:XF (2.2) BS02 rna N/A N/A A0A125YKH4 39827269
    991489 9i05:XH (2.2) BS01 rna N/A N/A A0A7J6JUA9 39827269
    991490 9i05:XH (2.2) BS02 rna N/A N/A A0A7J6JUA9 39827269
    991491 9i05:XH (2.2) BS03 rna N/A N/A A0A7J6JUA9 39827269
    991492 9i05:XI (2.2) BS01 rna N/A N/A A0A125YKV7 39827269
    991493 9i05:XI (2.2) BS02 rna N/A N/A A0A125YKV7 39827269
    991494 9i05:XI (2.2) BS03 rna N/A N/A A0A125YKV7 39827269
    991495 9i05:XJ (2.2) BS01 rna N/A N/A N/A 39827269
    991496 9i05:XJ (2.2) BS02 rna N/A N/A N/A 39827269
    991497 9i05:XJ (2.2) BS03 rna N/A N/A N/A 39827269
    991498 9i05:XJ (2.2) BS04 rna N/A N/A N/A 39827269
    991499 9i05:XJ (2.2) BS05 rna N/A N/A N/A 39827269
    991500 9i05:Xa (2.2) BS01 rna N/A N/A S8G210 39827269
    991501 9i05:Xa (2.2) BS02 rna N/A N/A S8G210 39827269
    991502 9i05:Xa (2.2) BS03 rna N/A N/A S8G210 39827269
    991503 9i05:Xa (2.2) BS04 rna N/A N/A S8G210 39827269
    991504 9i05:Xa (2.2) BS05 rna N/A N/A S8G210 39827269
    991505 9i05:Xa (2.2) BS06 rna N/A N/A S8G210 39827269
    991506 9i05:Xa (2.2) BS07 rna N/A N/A S8G210 39827269
    991507 9i05:Xa (2.2) BS08 rna N/A N/A S8G210 39827269
    991508 9i05:Xb (2.2) BS01 peptide N/A GO:0003676 ... S8F7E5 39827269
    991509 9i05:Xb (2.2) BS02 peptide N/A GO:0003676 ... S8F7E5 39827269
    991510 9i05:Xb (2.2) BS03 rna N/A GO:0003676 ... S8F7E5 39827269
    991511 9i05:Xb (2.2) BS04 rna N/A GO:0003676 ... S8F7E5 39827269
    991512 9i05:Xc (2.2) BS01 rna N/A N/A A0A125YYR6 39827269
    991513 9i05:Xc (2.2) BS02 rna N/A N/A A0A125YYR6 39827269
    991514 9i05:Xc (2.2) BS03 rna N/A N/A A0A125YYR6 39827269
    991515 9i05:Xc (2.2) BS04 rna N/A N/A A0A125YYR6 39827269
    991516 9i05:Xd (2.2) BS01 rna N/A N/A S8EQ41 39827269
    991517 9i05:Xd (2.2) BS02 rna N/A N/A S8EQ41 39827269
    991518 9i05:Xd (2.2) BS03 rna N/A N/A S8EQ41 39827269
    991519 9i05:Xe (2.2) BS01 rna N/A GO:0003723 ... A0A125YMH9 39827269
    991520 9i05:Xe (2.2) BS02 rna N/A GO:0003723 ... A0A125YMH9 39827269
    991521 9i05:Xe (2.2) BS03 rna N/A GO:0003723 ... A0A125YMH9 39827269
    991522 9i05:Xe (2.2) BS04 rna N/A GO:0003723 ... A0A125YMH9 39827269
    991523 9i05:Xe (2.2) BS05 rna N/A GO:0003723 ... A0A125YMH9 39827269
    991524 9i05:Xe (2.2) BS06 rna N/A GO:0003723 ... A0A125YMH9 39827269
    991525 9i05:Xf (2.2) BS01 rna N/A N/A S8F814 39827269
    991526 9i05:Xf (2.2) BS02 rna N/A N/A S8F814 39827269
    991527 9i05:Xf (2.2) BS03 rna N/A N/A S8F814 39827269
    991528 9i05:Xf (2.2) BS04 rna N/A N/A S8F814 39827269
    991529 9i05:Xf (2.2) BS05 rna N/A N/A S8F814 39827269
    991530 9i05:Xf (2.2) BS06 rna N/A N/A S8F814 39827269
    991531 9i05:Xg (2.2) BS01 rna N/A N/A A0A125YNS5 39827269
    991532 9i05:Xg (2.2) BS02 rna N/A N/A A0A125YNS5 39827269
    991533 9i05:Xg (2.2) BS03 rna N/A N/A A0A125YNS5 39827269
    991534 9i05:Xh (2.2) BS01 rna N/A N/A S8G8G0 39827269
    991535 9i05:Xh (2.2) BS02 rna N/A N/A S8G8G0 39827269
    991536 9i05:Xh (2.2) BS03 rna N/A N/A S8G8G0 39827269
    991537 9i05:Xi (2.2) BS01 rna N/A N/A A0A125YNK1 39827269
    991538 9i05:Xi (2.2) BS02 rna N/A N/A A0A125YNK1 39827269
    991539 9i05:Xi (2.2) BS03 rna N/A N/A A0A125YNK1 39827269
    991540 9i05:Xi (2.2) BS04 rna N/A N/A A0A125YNK1 39827269
    991541 9i05:Xi (2.2) BS05 rna N/A N/A A0A125YNK1 39827269
    991542 9i05:Xi (2.2) BS06 rna N/A N/A A0A125YNK1 39827269
    991543 9i05:Xj (2.2) BS01 rna N/A N/A S8F6E9 39827269
    991544 9i05:Xj (2.2) BS02 rna N/A N/A S8F6E9 39827269
    991545 9i05:Xj (2.2) BS03 rna N/A N/A S8F6E9 39827269
    991546 9i05:Xj (2.2) BS04 rna N/A N/A S8F6E9 39827269
    991547 9i05:Xj (2.2) BS05 rna N/A N/A S8F6E9 39827269
    991548 9i05:Xj (2.2) BS06 rna N/A N/A S8F6E9 39827269
    991549 9i05:Xj (2.2) BS07 rna N/A N/A S8F6E9 39827269
    991550 9i05:Xk (2.2) BS01 rna N/A GO:0003676 ... A0A125YVN6 39827269
    991551 9i05:Xk (2.2) BS02 rna N/A GO:0003676 ... A0A125YVN6 39827269
    991552 9i05:Xm (2.2) BS01 rna N/A N/A S8GAV7 39827269
    991553 9i05:Xm (2.2) BS02 rna N/A N/A S8GAV7 39827269
    991554 9i05:Xn (2.2) BS01 peptide N/A N/A S8F1K6 39827269
    991555 9i05:Xn (2.2) BS02 rna N/A N/A S8F1K6 39827269
    991556 9i05:Xn (2.2) BS03 rna N/A N/A S8F1K6 39827269
    991557 9i05:Xn (2.2) BS04 rna N/A N/A S8F1K6 39827269
    991558 9i05:Xo (2.2) BS01 rna N/A N/A S8F8W6 39827269
    991559 9i05:Xo (2.2) BS02 rna N/A N/A S8F8W6 39827269
    991560 9i05:Xo (2.2) BS03 rna N/A N/A S8F8W6 39827269
    991561 9i05:Xo (2.2) BS04 rna N/A N/A S8F8W6 39827269
    991562 9i05:Xo (2.2) BS05 rna N/A N/A S8F8W6 39827269
    991563 9i05:Xo (2.2) BS06 rna N/A N/A S8F8W6 39827269
    991564 9i05:Xo (2.2) BS07 rna N/A N/A S8F8W6 39827269
    991565 9i05:Xp (2.2) BS01 rna N/A GO:0000413 ... S8FB56 39827269
    991566 9i05:Xp (2.2) BS02 rna N/A GO:0000413 ... S8FB56 39827269
    991567 9i05:Xq (2.2) BS01 rna N/A N/A S8EU00 39827269
    991568 9i05:Xq (2.2) BS02 rna N/A N/A S8EU00 39827269
    991569 9i05:Xr (2.2) BS01 rna N/A N/A S8FC14 39827269
    991570 9i05:Xr (2.2) BS02 rna N/A N/A S8FC14 39827269
    991571 9i05:Xr (2.2) BS03 rna N/A N/A S8FC14 39827269
    991572 9i05:Xs (2.2) BS01 rna N/A N/A A0A125YRP8 39827269
    991573 9i05:Xs (2.2) BS02 rna N/A N/A A0A125YRP8 39827269
    991574 9i05:Xt (2.2) BS01 rna N/A N/A A0A125YYH1 39827269
    991575 9i05:Xt (2.2) BS02 rna N/A N/A A0A125YYH1 39827269
    991576 9i05:Xt (2.2) BS03 rna N/A N/A A0A125YYH1 39827269
    991577 9i05:Xt (2.2) BS04 rna N/A N/A A0A125YYH1 39827269
    991578 9i05:Xv (2.2) BS01 peptide N/A GO:0000963 ... S8EW79 39827269
    991579 9i05:Xw (2.2) BS01 rna N/A N/A S8G7J3 39827269
    991580 9i05:Xw (2.2) BS02 rna N/A N/A S8G7J3 39827269
    991581 9i05:Xw (2.2) BS03 rna N/A N/A S8G7J3 39827269
    991582 9i05:Xw (2.2) BS04 FES N/A N/A S8G7J3 39827269
    991583 9i05:Xx (2.2) BS01 rna N/A N/A S8EXG3 39827269
    991584 9i05:Xx (2.2) BS02 rna N/A N/A S8EXG3 39827269
    991585 9i05:Xy (2.2) BS01 rna N/A N/A A0A125YKA8 39827269
    991586 9i05:Xy (2.2) BS02 rna N/A N/A A0A125YKA8 39827269
    991587 9i05:Xz (2.2) BS01 rna N/A GO:0003700 ... S8GSN6 39827269
    991588 9i05:Xz (2.2) BS02 rna N/A GO:0003700 ... S8GSN6 39827269
    991589 9i05:Xz (2.2) BS03 rna N/A GO:0003700 ... S8GSN6 39827269
    991590 9i06:A (3.2) BS01 NAD N/A N/A P12860 N/A
    991591 9i06:B (3.2) BS01 NAD N/A N/A P19866 N/A
    991592 9i06:C (3.2) BS01 NAD N/A N/A P12860 N/A
    991593 9i06:C (3.2) BS02 NAD N/A N/A P12860 N/A
    991594 9i06:D (3.2) BS01 NAD N/A N/A P19866 N/A
    991595 9i06:E (3.2) BS01 NAD N/A N/A P12860 N/A
    991596 9i06:E (3.2) BS02 NAD N/A N/A P12860 N/A
    991597 9i06:F (3.2) BS01 NAD N/A N/A P19866 N/A
    991598 9i06:G (3.2) BS01 NAD N/A N/A P12860 N/A
    991599 9i06:G (3.2) BS02 NAD N/A N/A P12860 N/A
    991600 9i06:H (3.2) BS01 NAD N/A N/A P19866 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).