SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    991801 9i14:Lj (3.34) BS02 rna N/A GO:0000448 ... P61927 N/A
    991802 9i14:Lj (3.34) BS03 ZN N/A GO:0000448 ... P61927 N/A
    991803 9i14:Lk (3.34) BS01 rna N/A GO:0002181 ... P63173 N/A
    991804 9i14:Ll (3.34) BS01 rna N/A GO:0002181 ... P62891 N/A
    991805 9i14:Ll (3.34) BS02 rna N/A GO:0002181 ... P62891 N/A
    991806 9i14:Lm (3.34) BS01 rna N/A GO:0002181 ... P62987 N/A
    991807 9i14:Lo (3.34) BS01 rna N/A GO:0002181 ... P83881 N/A
    991808 9i14:Lo (3.34) BS02 rna N/A GO:0002181 ... P83881 N/A
    991809 9i14:Lo (3.34) BS03 ZN N/A GO:0002181 ... P83881 N/A
    991810 9i14:Lp (3.34) BS01 rna N/A GO:0002181 ... P61513 N/A
    991811 9i14:Lp (3.34) BS02 rna N/A GO:0002181 ... P61513 N/A
    991812 9i14:Lp (3.34) BS03 ZN N/A GO:0002181 ... P61513 N/A
    991813 9i14:Lr (3.34) BS01 rna N/A GO:0002181 ... P46779 N/A
    991814 9i14:SA (3.34) BS01 rna N/A GO:0000028 ... P08865 N/A
    991815 9i14:SB (3.34) BS01 rna N/A GO:0002181 ... P61247 N/A
    991816 9i14:SC (3.34) BS01 rna N/A GO:0002181 ... P15880 N/A
    991817 9i14:SD (3.34) BS01 rna N/A GO:0001228 ... P23396 N/A
    991818 9i14:SE (3.34) BS01 rna N/A GO:0002181 ... P62701 N/A
    991819 9i14:SF (3.34) BS01 rna N/A GO:0002181 ... P46782 N/A
    991820 9i14:SF (3.34) BS02 MG N/A GO:0002181 ... P46782 N/A
    991821 9i14:SG (3.34) BS01 rna N/A GO:0002181 ... P62753 N/A
    991822 9i14:SH (3.34) BS01 rna N/A GO:0002181 ... P62081 N/A
    991823 9i14:SI (3.34) BS01 rna N/A GO:0002181 ... P62241 N/A
    991824 9i14:SJ (3.34) BS01 rna N/A GO:0002181 ... P46781 N/A
    991825 9i14:SK (3.34) BS01 rna N/A GO:0002181 ... P46783 N/A
    991826 9i14:SL (3.34) BS01 rna N/A GO:0002181 ... P62280 N/A
    991827 9i14:SM (3.34) BS01 rna N/A GO:0002181 ... P25398 N/A
    991828 9i14:SN (3.34) BS01 rna N/A GO:0000462 ... P62277 N/A
    991829 9i14:SN (3.34) BS02 rna N/A GO:0000462 ... P62277 N/A
    991830 9i14:SO (3.34) BS01 rna N/A GO:0000028 ... P62263 N/A
    991831 9i14:SP (3.34) BS01 rna N/A GO:0000056 ... P62841 N/A
    991832 9i14:SP (3.34) BS02 rna N/A GO:0000056 ... P62841 N/A
    991833 9i14:SQ (3.34) BS01 rna N/A GO:0000462 ... P62249 N/A
    991834 9i14:SR (3.34) BS01 rna N/A GO:0002181 ... P08708 N/A
    991835 9i14:SS (3.34) BS01 rna N/A GO:0002181 ... P62269 N/A
    991836 9i14:ST (3.34) BS01 rna N/A GO:0000028 ... P39019 N/A
    991837 9i14:SU (3.34) BS01 rna N/A GO:0002181 ... P60866 N/A
    991838 9i14:SW (3.34) BS01 rna N/A GO:0002181 ... P62244 N/A
    991839 9i14:SX (3.34) BS01 rna N/A GO:0002181 ... P62266 N/A
    991840 9i14:SY (3.34) BS01 rna N/A GO:0002181 ... P62847 N/A
    991841 9i14:SZ (3.34) BS01 rna N/A GO:0002181 ... P62851 N/A
    991842 9i14:Sa (3.34) BS01 rna N/A GO:0002181 ... P62854 N/A
    991843 9i14:Sb (3.34) BS01 rna N/A GO:0002181 ... P42677 N/A
    991844 9i14:Sc (3.34) BS01 rna N/A GO:0000028 ... P62857 N/A
    991845 9i14:Sd (3.34) BS01 rna N/A GO:0002181 ... P62273 N/A
    991846 9i14:Sd (3.34) BS02 ZN N/A GO:0002181 ... P62273 N/A
    991847 9i14:Se (3.34) BS01 rna N/A N/A P62861 N/A
    991848 9i14:Se (3.34) BS02 rna N/A N/A P62861 N/A
    991849 9i14:Sf (3.34) BS01 rna N/A GO:0002181 ... P62979 N/A
    991850 9i14:Sf (3.34) BS02 ZN N/A GO:0002181 ... P62979 N/A
    991851 9i14:Sg (3.34) BS01 rna N/A GO:0001891 ... P63244 N/A
    991852 9i15:A (2.47) BS01 CA N/A GO:0005634 ... Q01105 40187686
    991853 9i15:Q (2.47) BS01 CA N/A GO:0005634 ... Q01105 40187686
    991854 9i16:A (2.82) BS01 dna N/A GO:0003676 ... A0JN36 40966504
    991855 9i16:A (2.82) BS02 dna N/A GO:0003676 ... A0JN36 40966504
    991856 9i16:A (2.82) BS03 ZN N/A GO:0003676 ... A0JN36 40966504
    991857 9i16:A (2.82) BS04 ADP N/A GO:0003676 ... A0JN36 40966504
    991858 9i16:A (2.82) BS05 MG N/A GO:0003676 ... A0JN36 40966504
    991859 9i16:B (2.82) BS01 dna N/A GO:0003676 ... A0JN36 40966504
    991860 9i16:B (2.82) BS02 dna N/A GO:0003676 ... A0JN36 40966504
    991861 9i16:B (2.82) BS03 ZN N/A GO:0003676 ... A0JN36 40966504
    991862 9i16:B (2.82) BS04 ADP N/A GO:0003676 ... A0JN36 40966504
    991863 9i16:C (2.82) BS01 dna N/A GO:0003676 ... A0JN36 40966504
    991864 9i16:C (2.82) BS02 dna N/A GO:0003676 ... A0JN36 40966504
    991865 9i16:C (2.82) BS03 ZN N/A GO:0003676 ... A0JN36 40966504
    991866 9i16:C (2.82) BS04 ADP N/A GO:0003676 ... A0JN36 40966504
    991867 9i16:C (2.82) BS05 MG N/A GO:0003676 ... A0JN36 40966504
    991868 9i16:D (2.82) BS01 dna N/A GO:0003676 ... A0AAA9S5G9 40966504
    991869 9i16:D (2.82) BS02 dna N/A GO:0003676 ... A0AAA9S5G9 40966504
    991870 9i16:D (2.82) BS03 ZN N/A GO:0003676 ... A0AAA9S5G9 40966504
    991871 9i16:D (2.82) BS04 ADP N/A GO:0003676 ... A0AAA9S5G9 40966504
    991872 9i16:E (2.82) BS01 dna N/A GO:0003676 ... A0JN36 40966504
    991873 9i16:E (2.82) BS02 ZN N/A GO:0003676 ... A0JN36 40966504
    991874 9i16:E (2.82) BS03 ADP N/A GO:0003676 ... A0JN36 40966504
    991875 9i16:F (2.82) BS01 dna N/A GO:0003676 ... A0JN36 40966504
    991876 9i16:F (2.82) BS02 dna N/A GO:0003676 ... A0JN36 40966504
    991877 9i16:F (2.82) BS03 ZN N/A GO:0003676 ... A0JN36 40966504
    991878 9i16:F (2.82) BS04 ADP N/A GO:0003676 ... A0JN36 40966504
    991879 9i17:A (1.55) BS01 A1IYZ N/A GO:0004672 ... P68400 41571889
    991880 9i19:A (1.63) BS01 FE N/A GO:0004322 ... P02794 N/A
    991881 9i19:A (1.63) BS02 FE N/A GO:0004322 ... P02794 N/A
    991882 9i19:A (1.63) BS03 MG N/A GO:0004322 ... P02794 N/A
    991883 9i1a:A (1.73) BS01 FE N/A N/A Q8N4E7 N/A
    991884 9i1a:A (1.73) BS02 FE N/A N/A Q8N4E7 N/A
    991885 9i1a:A (1.73) BS03 FE N/A N/A Q8N4E7 N/A
    991886 9i1a:A (1.73) BS04 FE N/A N/A Q8N4E7 N/A
    991887 9i1a:A (1.73) BS05 FE N/A N/A Q8N4E7 N/A
    991888 9i1a:A (1.73) BS06 FE N/A N/A Q8N4E7 N/A
    991889 9i1a:A (1.73) BS07 MG N/A N/A Q8N4E7 N/A
    991890 9i1a:A (1.73) BS08 MG N/A N/A Q8N4E7 N/A
    991891 9i1b:A (1.63) BS01 FE N/A GO:0004322 ... P02794 N/A
    991892 9i1b:A (1.63) BS02 FE N/A GO:0004322 ... P02794 N/A
    991893 9i1b:A (1.63) BS03 MG N/A GO:0004322 ... P02794 N/A
    991894 9i1b:A (1.63) BS04 MG N/A GO:0004322 ... P02794 N/A
    991895 9i1b:A (1.63) BS05 MG N/A GO:0004322 ... P02794 N/A
    991896 9i1c:A (1.58) BS01 FE N/A GO:0004322 ... P02794 N/A
    991897 9i1c:A (1.58) BS02 FE N/A GO:0004322 ... P02794 N/A
    991898 9i1c:A (1.58) BS03 FE N/A GO:0004322 ... P02794 N/A
    991899 9i1c:A (1.58) BS04 MG N/A GO:0004322 ... P02794 N/A
    991900 9i1c:A (1.58) BS05 MG N/A GO:0004322 ... P02794 N/A
    991901 9i1c:A (1.58) BS06 MG N/A GO:0004322 ... P02794 N/A
    991902 9i1d:A (1.65) BS01 FE N/A N/A Q8N4E7 N/A
    991903 9i1d:A (1.65) BS02 FE N/A N/A Q8N4E7 N/A
    991904 9i1d:A (1.65) BS03 FE N/A N/A Q8N4E7 N/A
    991905 9i1d:A (1.65) BS04 MG N/A N/A Q8N4E7 N/A
    991906 9i1d:A (1.65) BS05 MG N/A N/A Q8N4E7 N/A
    991907 9i1e:A (1.76) BS01 FE N/A GO:0004322 ... P02794 N/A
    991908 9i1e:A (1.76) BS02 FE N/A GO:0004322 ... P02794 N/A
    991909 9i1e:A (1.76) BS03 MG N/A GO:0004322 ... P02794 N/A
    991910 9i1e:A (1.76) BS04 MG N/A GO:0004322 ... P02794 N/A
    991911 9i1f:A (1.72) BS01 FE N/A N/A Q8N4E7 N/A
    991912 9i1f:A (1.72) BS02 FE N/A N/A Q8N4E7 N/A
    991913 9i1f:A (1.72) BS03 FE N/A N/A Q8N4E7 N/A
    991914 9i1g:A (1.6) BS01 MG N/A GO:0005509 ... A3FKT8 41313715
    991915 9i1g:B (1.6) BS01 MG N/A GO:0005509 ... A3FKT8 41313715
    991916 9i1h:A (2.35) BS01 ZN N/A GO:0000166 ... P21589 40367555
    991917 9i1h:A (2.35) BS02 ZN N/A GO:0000166 ... P21589 40367555
    991918 9i1h:A (2.35) BS03 A1IZZ N/A GO:0000166 ... P21589 40367555
    991919 9i1h:B (2.35) BS01 ZN N/A GO:0000166 ... P21589 40367555
    991920 9i1h:B (2.35) BS02 ZN N/A GO:0000166 ... P21589 40367555
    991921 9i1h:B (2.35) BS03 A1IZZ N/A GO:0000166 ... P21589 40367555
    991922 9i1i:A (4.5) BS01 ATP N/A GO:0001525 ... E9Q555 40360510
    991923 9i1i:A (4.5) BS02 MG N/A GO:0001525 ... E9Q555 40360510
    991924 9i1i:A (4.5) BS03 ZN N/A GO:0001525 ... E9Q555 40360510
    991925 9i1i:A (4.5) BS04 ZN N/A GO:0001525 ... E9Q555 40360510
    991926 9i1i:A (4.5) BS05 ATP N/A GO:0001525 ... E9Q555 40360510
    991927 9i1j:A (3.8) BS01 ATP N/A GO:0001525 ... E9Q555 40360510
    991928 9i1j:A (3.8) BS02 ZN N/A GO:0001525 ... E9Q555 40360510
    991929 9i1j:A (3.8) BS03 ZN N/A GO:0001525 ... E9Q555 40360510
    991930 9i1j:A (3.8) BS04 ADP N/A GO:0001525 ... E9Q555 40360510
    991931 9i1j:A (3.8) BS05 ADP N/A GO:0001525 ... E9Q555 40360510
    991932 9i1l:A (1.68) BS01 A1IZQ N/A GO:0000242 ... P63000 N/A
    991933 9i1m:A (1.35) BS01 A1IZL N/A GO:0030246 ... Q8X6A6 40730545
    991934 9i1n:A (1.7) BS01 A1IZO N/A N/A A0AAP7ZHZ3 40625787
    991935 9i1n:A (1.7) BS02 BDF N/A N/A A0AAP7ZHZ3 40625787
    991936 9i1n:A (1.7) BS03 BDF N/A N/A A0AAP7ZHZ3 40625787
    991937 9i1o:A (1.64) BS01 BDF N/A N/A A0AAP7ZHZ3 40625787
    991938 9i1o:A (1.64) BS02 BDF N/A N/A A0AAP7ZHZ3 40625787
    991939 9i1o:A (1.64) BS03 BDF N/A N/A A0AAP7ZHZ3 40625787
    991940 9i1o:A (1.64) BS04 A1IZO N/A N/A A0AAP7ZHZ3 40625787
    991941 9i1o:B (1.64) BS01 BDF N/A N/A A0AAP7ZHZ3 40625787
    991942 9i1o:B (1.64) BS02 BDF N/A N/A A0AAP7ZHZ3 40625787
    991943 9i1o:B (1.64) BS03 BDF N/A N/A A0AAP7ZHZ3 40625787
    991944 9i1o:C (1.64) BS01 BDF N/A N/A A0AAP7ZHZ3 40625787
    991945 9i1o:C (1.64) BS02 BDF N/A N/A A0AAP7ZHZ3 40625787
    991946 9i1o:C (1.64) BS03 BDF N/A N/A A0AAP7ZHZ3 40625787
    991947 9i1o:C (1.64) BS04 A1IZO N/A N/A A0AAP7ZHZ3 40625787
    991948 9i1o:D (1.64) BS01 BDF N/A N/A A0AAP7ZHZ3 40625787
    991949 9i1o:D (1.64) BS02 BDF N/A N/A A0AAP7ZHZ3 40625787
    991950 9i1o:D (1.64) BS03 BDF N/A N/A A0AAP7ZHZ3 40625787
    991951 9i1o:E (1.64) BS01 BDF N/A N/A A0AAP7ZHZ3 40625787
    991952 9i1o:E (1.64) BS02 BDF N/A N/A A0AAP7ZHZ3 40625787
    991953 9i1o:E (1.64) BS03 BDF N/A N/A A0AAP7ZHZ3 40625787
    991954 9i1o:E (1.64) BS04 A1IZO N/A N/A A0AAP7ZHZ3 40625787
    991955 9i1o:F (1.64) BS01 BDF N/A N/A A0AAP7ZHZ3 40625787
    991956 9i1o:F (1.64) BS02 A1IZO N/A N/A A0AAP7ZHZ3 40625787
    991957 9i1o:F (1.64) BS03 BDF N/A N/A A0AAP7ZHZ3 40625787
    991958 9i1o:F (1.64) BS04 BDF N/A N/A A0AAP7ZHZ3 40625787
    991959 9i1p:A (3.2) BS01 dna N/A GO:0003676 ... A0JN36 40966504
    991960 9i1p:A (3.2) BS02 dna N/A GO:0003676 ... A0JN36 40966504
    991961 9i1p:A (3.2) BS03 ZN N/A GO:0003676 ... A0JN36 40966504
    991962 9i1p:A (3.2) BS04 ADP N/A GO:0003676 ... A0JN36 40966504
    991963 9i1p:B (3.2) BS01 dna N/A GO:0003676 ... A0JN36 40966504
    991964 9i1p:B (3.2) BS02 dna N/A GO:0003676 ... A0JN36 40966504
    991965 9i1p:B (3.2) BS03 ZN N/A GO:0003676 ... A0JN36 40966504
    991966 9i1p:B (3.2) BS04 ADP N/A GO:0003676 ... A0JN36 40966504
    991967 9i1p:C (3.2) BS01 dna N/A GO:0003676 ... A0JN36 40966504
    991968 9i1p:C (3.2) BS02 dna N/A GO:0003676 ... A0JN36 40966504
    991969 9i1p:C (3.2) BS03 ZN N/A GO:0003676 ... A0JN36 40966504
    991970 9i1p:C (3.2) BS04 ADP N/A GO:0003676 ... A0JN36 40966504
    991971 9i1p:D (3.2) BS01 dna N/A GO:0003676 ... A0JN36 40966504
    991972 9i1p:D (3.2) BS02 dna N/A GO:0003676 ... A0JN36 40966504
    991973 9i1p:D (3.2) BS03 ZN N/A GO:0003676 ... A0JN36 40966504
    991974 9i1p:D (3.2) BS04 ADP N/A GO:0003676 ... A0JN36 40966504
    991975 9i1s:A (2.09) BS01 ZN N/A GO:0004386 ... P0DTD1 40421686
    991976 9i1s:A (2.09) BS02 ZN N/A GO:0004386 ... P0DTD1 40421686
    991977 9i1s:A (2.09) BS03 ZN N/A GO:0004386 ... P0DTD1 40421686
    991978 9i1s:B (2.09) BS01 ZN N/A GO:0004386 ... P0DTD1 40421686
    991979 9i1s:B (2.09) BS02 ZN N/A GO:0004386 ... P0DTD1 40421686
    991980 9i1s:B (2.09) BS03 ZN N/A GO:0004386 ... P0DTD1 40421686
    991981 9i1s:B (2.09) BS04 MYC N/A GO:0004386 ... P0DTD1 40421686
    991982 9i1t:A (2.39) BS01 A1IZ2 N/A N/A Q9WVG6 N/A
    991983 9i1t:B (2.39) BS01 A1IZ2 N/A N/A Q9WVG6 N/A
    991984 9i1t:C (2.39) BS01 A1IZ2 N/A N/A Q9WVG6 N/A
    991985 9i1t:D (2.39) BS01 A1IZ2 N/A N/A Q9WVG6 N/A
    991986 9i1u:A (1.9) BS01 CU N/A N/A B3PDT6 41669087
    991987 9i1u:B (1.9) BS01 CU N/A N/A B3PDT6 41669087
    991988 9i1u:C (1.9) BS01 CU N/A N/A B3PDT6 41669087
    991989 9i1u:D (1.9) BS01 CU N/A N/A B3PDT6 41669087
    991990 9i1u:E (1.9) BS01 CU N/A N/A B3PDT6 41669087
    991991 9i1u:F (1.9) BS01 CU N/A N/A B3PDT6 41669087
    991992 9i1u:G (1.9) BS01 CU N/A N/A B3PDT6 41669087
    991993 9i1u:H (1.9) BS01 CU N/A N/A B3PDT6 41669087
    991994 9i1w:LA (2.38) BS01 rna N/A GO:0002181 ... G0S4P8 41432034
    991995 9i1w:LA (2.38) BS02 MG N/A GO:0002181 ... G0S4P8 41432034
    991996 9i1w:LA (2.38) BS03 MG N/A GO:0002181 ... G0S4P8 41432034
    991997 9i1w:LB (2.38) BS01 rna N/A GO:0003723 ... G0RXW1 41432034
    991998 9i1w:LC (2.38) BS01 rna N/A N/A G0SFC3 41432034
    991999 9i1w:LC (2.38) BS02 rna N/A N/A G0SFC3 41432034
    992000 9i1w:LD (2.38) BS01 rna N/A GO:0000027 ... G0SEG2 41432034

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).