SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    992001 9i1w:LD (2.38) BS02 rna N/A GO:0000027 ... G0SEG2 41432034
    992002 9i1w:LE (2.38) BS01 rna N/A GO:0000027 ... G0S0D6 41432034
    992003 9i1w:LE (2.38) BS02 MG N/A GO:0000027 ... G0S0D6 41432034
    992004 9i1w:LF (2.38) BS01 rna N/A GO:0000463 ... G0SFL0 41432034
    992005 9i1w:LG (2.38) BS01 rna N/A GO:0003723 ... G0SAJ9 41432034
    992006 9i1w:LG (2.38) BS02 rna N/A GO:0003723 ... G0SAJ9 41432034
    992007 9i1w:LH (2.38) BS01 rna N/A N/A G0S0E5 41432034
    992008 9i1w:LI (2.38) BS01 rna N/A N/A G0SEI1 41432034
    992009 9i1w:LI (2.38) BS02 rna N/A N/A G0SEI1 41432034
    992010 9i1w:LJ (2.38) BS01 rna N/A N/A G0SHQ2 41432034
    992011 9i1w:LJ (2.38) BS02 rna N/A N/A G0SHQ2 41432034
    992012 9i1w:LK (2.38) BS01 rna N/A GO:0000027 ... G0SGH8 41432034
    992013 9i1w:LL (2.38) BS01 rna N/A GO:0003723 ... G0S992 41432034
    992014 9i1w:LM (2.38) BS01 rna N/A GO:0003723 ... G0S1R0 41432034
    992015 9i1w:LN (2.38) BS01 rna N/A GO:0002181 ... G0RZ88 41432034
    992016 9i1w:LN (2.38) BS02 rna N/A GO:0002181 ... G0RZ88 41432034
    992017 9i1w:LO (2.38) BS01 rna N/A GO:0003729 ... G0SH61 41432034
    992018 9i1w:LP (2.38) BS01 rna N/A GO:0002181 ... G0SGY1 41432034
    992019 9i1w:LP (2.38) BS02 rna N/A GO:0002181 ... G0SGY1 41432034
    992020 9i1w:LQ (2.38) BS01 rna N/A GO:0003723 ... G0S9B5 41432034
    992021 9i1w:LR (2.38) BS01 rna N/A N/A G0S9T3 41432034
    992022 9i1w:LS (2.38) BS01 rna N/A N/A G0SCE2 41432034
    992023 9i1w:LS (2.38) BS02 rna N/A N/A G0SCE2 41432034
    992024 9i1w:LT (2.38) BS01 rna N/A GO:1990904 ... G0S0Z3 41432034
    992025 9i1w:LT (2.38) BS02 rna N/A GO:1990904 ... G0S0Z3 41432034
    992026 9i1w:LU (2.38) BS01 rna N/A GO:0002181 ... G0SDS8 41432034
    992027 9i1w:LV (2.38) BS01 rna N/A GO:0003735 ... G0SI44 41432034
    992028 9i1w:LW (2.38) BS01 rna N/A N/A G0S1P9 41432034
    992029 9i1w:LX (2.38) BS01 rna N/A N/A G0S507 41432034
    992030 9i1w:LX (2.38) BS02 rna N/A N/A G0S507 41432034
    992031 9i1w:LY (2.38) BS01 rna N/A N/A G0RYN9 41432034
    992032 9i1w:LY (2.38) BS02 rna N/A N/A G0RYN9 41432034
    992033 9i1w:LZ (2.38) BS01 rna N/A GO:1990904 ... G0RZE9 41432034
    992034 9i1w:La (2.38) BS01 rna N/A GO:0003723 ... P08978 41432034
    992035 9i1w:Lb (2.38) BS01 rna N/A GO:0002181 ... Q2H9W4 41432034
    992036 9i1w:Lc (2.38) BS01 rna N/A N/A G0SEI0 41432034
    992037 9i1w:Ld (2.38) BS01 rna N/A GO:0002181 ... G0SD68 41432034
    992038 9i1w:Le (2.38) BS01 rna N/A GO:0022625 ... G0S6V4 41432034
    992039 9i1w:Lf (2.38) BS01 rna N/A N/A G0SCL3 41432034
    992040 9i1w:Lg (2.38) BS01 rna N/A N/A G0SFN0 41432034
    992041 9i1w:Lg (2.38) BS02 ZN N/A N/A G0SFN0 41432034
    992042 9i1w:Lh (2.38) BS01 rna N/A N/A G0S0D7 41432034
    992043 9i1w:Lh (2.38) BS02 rna N/A N/A G0S0D7 41432034
    992044 9i1w:Li (2.38) BS01 rna N/A GO:1990904 ... G0SBN1 41432034
    992045 9i1w:Lj (2.38) BS01 rna N/A GO:0003723 ... G0S101 41432034
    992046 9i1w:Lj (2.38) BS02 rna N/A GO:0003723 ... G0S101 41432034
    992047 9i1w:Lj (2.38) BS03 ZN N/A GO:0003723 ... G0S101 41432034
    992048 9i1w:Lk (2.38) BS01 rna N/A N/A G0SG89 41432034
    992049 9i1w:Ll (2.38) BS01 rna N/A GO:0022625 ... Q2H9R2 41432034
    992050 9i1w:Ll (2.38) BS02 rna N/A GO:0022625 ... Q2H9R2 41432034
    992051 9i1w:Lm (2.38) BS01 rna N/A N/A G0S8G4 41432034
    992052 9i1w:Lm (2.38) BS02 ZN N/A N/A G0S8G4 41432034
    992053 9i1w:Lo (2.38) BS01 rna N/A N/A G0SBZ6 41432034
    992054 9i1w:Lo (2.38) BS02 rna N/A N/A G0SBZ6 41432034
    992055 9i1w:Lo (2.38) BS03 ZN N/A N/A G0SBZ6 41432034
    992056 9i1w:Lp (2.38) BS01 rna N/A N/A G0S6B0 41432034
    992057 9i1w:Lp (2.38) BS02 ZN N/A N/A G0S6B0 41432034
    992058 9i1w:Lq (2.38) BS01 rna N/A N/A G0SHJ6 41432034
    992059 9i1w:Ls (2.38) BS01 rna N/A GO:0000027 ... G0SGP3 41432034
    992060 9i20:A (2.85) BS01 ADP N/A GO:0000139 ... P78383 40399679
    992061 9i22:A (2.42) BS01 dna N/A GO:0003676 ... P46063 40966504
    992062 9i22:A (2.42) BS02 dna N/A GO:0003676 ... P46063 40966504
    992063 9i22:A (2.42) BS03 ZN N/A GO:0003676 ... P46063 40966504
    992064 9i22:A (2.42) BS04 ADP N/A GO:0003676 ... P46063 40966504
    992065 9i22:B (2.42) BS01 dna N/A GO:0003676 ... P46063 40966504
    992066 9i22:B (2.42) BS02 ZN N/A GO:0003676 ... P46063 40966504
    992067 9i22:B (2.42) BS03 ADP N/A GO:0003676 ... P46063 40966504
    992068 9i23:A (3.69) BS01 dna N/A GO:0003676 ... P46063 40966504
    992069 9i23:A (3.69) BS02 dna N/A GO:0003676 ... P46063 40966504
    992070 9i23:A (3.69) BS03 ZN N/A GO:0003676 ... P46063 40966504
    992071 9i23:A (3.69) BS04 ADP N/A GO:0003676 ... P46063 40966504
    992072 9i23:B (3.69) BS01 ZN N/A GO:0003676 ... P46063 40966504
    992073 9i23:B (3.69) BS02 ADP N/A GO:0003676 ... P46063 40966504
    992074 9i24:H (1.2) BS01 peptide N/A N/A P00742 41144779
    992075 9i24:H (1.2) BS02 peptide N/A N/A P00742 41144779
    992076 9i24:H (1.2) BS03 CA N/A N/A P00742 41144779
    992077 9i24:H (1.2) BS04 0GJ N/A N/A P00742 41144779
    992078 9i25:C (1.911) BS01 peptide N/A N/A A0A6N3AEW7 N/A
    992079 9i27:A (2.3) BS01 MG N/A GO:0000287 ... Q2RRP5 N/A
    992080 9i27:A (2.3) BS02 CAP N/A GO:0000287 ... Q2RRP5 N/A
    992081 9i27:A (2.3) BS03 CAP N/A GO:0000287 ... Q2RRP5 N/A
    992082 9i27:B (2.3) BS01 CAP N/A GO:0000287 ... Q2RRP5 N/A
    992083 9i27:B (2.3) BS02 MG N/A GO:0000287 ... Q2RRP5 N/A
    992084 9i27:B (2.3) BS03 CAP N/A GO:0000287 ... Q2RRP5 N/A
    992085 9i28:A (2.93) BS01 MG N/A GO:0000287 ... Q2RRP5 N/A
    992086 9i28:A (2.93) BS02 CAP N/A GO:0000287 ... Q2RRP5 N/A
    992087 9i28:A (2.93) BS03 CAP N/A GO:0000287 ... Q2RRP5 N/A
    992088 9i28:B (2.93) BS01 CAP N/A GO:0000287 ... Q2RRP5 N/A
    992089 9i28:B (2.93) BS02 MG N/A GO:0000287 ... Q2RRP5 N/A
    992090 9i28:B (2.93) BS03 CAP N/A GO:0000287 ... Q2RRP5 N/A
    992091 9i29:AAA (1.62) BS01 ZN N/A GO:0004064 ... P00918 N/A
    992092 9i29:AAA (1.62) BS02 A1IZC N/A GO:0004064 ... P00918 N/A
    992093 9i2a:A (1.7) BS01 FES N/A GO:0051536 ... D5ARY7 40396536
    992094 9i2a:B (1.7) BS01 FES N/A GO:0051536 ... D5ARY7 40396536
    992095 9i2b:A (3.0) BS01 ADP N/A GO:0005200 ... P61158 40954369
    992096 9i2b:B (3.0) BS01 peptide N/A GO:0005200 ... P61160 40954369
    992097 9i2b:B (3.0) BS02 ADP N/A GO:0005200 ... P61160 40954369
    992098 9i2b:I (3.0) BS01 peptide N/A GO:0001738 ... Q6QAQ1 40954369
    992099 9i2b:I (3.0) BS02 peptide N/A GO:0001738 ... Q6QAQ1 40954369
    992100 9i2b:I (3.0) BS03 ADP N/A GO:0001738 ... Q6QAQ1 40954369
    992101 9i2b:J (3.0) BS01 ADP N/A GO:0001738 ... Q6QAQ1 40954369
    992102 9i2b:K (3.0) BS01 ADP N/A GO:0005200 ... P61158 40954369
    992103 9i2b:L (3.0) BS01 peptide N/A GO:0005200 ... P61160 40954369
    992104 9i2b:L (3.0) BS02 ADP N/A GO:0005200 ... P61160 40954369
    992105 9i2b:S (3.0) BS01 peptide N/A GO:0001738 ... Q6QAQ1 40954369
    992106 9i2b:S (3.0) BS02 peptide N/A GO:0001738 ... Q6QAQ1 40954369
    992107 9i2b:S (3.0) BS03 ADP N/A GO:0001738 ... Q6QAQ1 40954369
    992108 9i2b:T (3.0) BS01 ADP N/A GO:0001738 ... Q6QAQ1 40954369
    992109 9i2c:A (3.3) BS01 A1ACV N/A GO:0043161 ... Q9NVX7 40175372
    992110 9i2c:B (3.3) BS01 A1ACV N/A GO:0000118 ... Q92769 40175372
    992111 9i2c:B (3.3) BS02 ZN N/A GO:0000118 ... Q92769 40175372
    992112 9i2d:CR (2.19) BS01 rna N/A GO:0002184 ... P62495 41577716
    992113 9i2d:CR (2.19) BS02 rna N/A GO:0002184 ... P62495 41577716
    992114 9i2d:CR (2.19) BS03 rna N/A GO:0002184 ... P62495 41577716
    992115 9i2d:CR (2.19) BS04 rna N/A GO:0002184 ... P62495 41577716
    992116 9i2d:CZ (2.19) BS01 rna N/A N/A N/A 41577716
    992117 9i2d:LA (2.19) BS01 rna N/A GO:0002181 ... P62917 41577716
    992118 9i2d:LA (2.19) BS02 rna N/A GO:0002181 ... P62917 41577716
    992119 9i2d:LA (2.19) BS03 MG N/A GO:0002181 ... P62917 41577716
    992120 9i2d:LB (2.19) BS01 rna N/A GO:0002181 ... P39023 41577716
    992121 9i2d:LC (2.19) BS01 rna N/A GO:0002181 ... P36578 41577716
    992122 9i2d:LC (2.19) BS02 rna N/A GO:0002181 ... P36578 41577716
    992123 9i2d:LD (2.19) BS01 rna N/A GO:0000027 ... P46777 41577716
    992124 9i2d:LD (2.19) BS02 rna N/A GO:0000027 ... P46777 41577716
    992125 9i2d:LE (2.19) BS01 rna N/A GO:0002181 ... Q02878 41577716
    992126 9i2d:LF (2.19) BS01 rna N/A GO:0000463 ... P18124 41577716
    992127 9i2d:LF (2.19) BS02 rna N/A GO:0000463 ... P18124 41577716
    992128 9i2d:LG (2.19) BS01 rna N/A GO:0000470 ... P62424 41577716
    992129 9i2d:LG (2.19) BS02 rna N/A GO:0000470 ... P62424 41577716
    992130 9i2d:LH (2.19) BS01 rna N/A GO:0002181 ... P32969 41577716
    992131 9i2d:LI (2.19) BS01 rna N/A GO:0000027 ... Q96L21 41577716
    992132 9i2d:LI (2.19) BS02 rna N/A GO:0000027 ... Q96L21 41577716
    992133 9i2d:LJ (2.19) BS01 rna N/A GO:0000027 ... P62913 41577716
    992134 9i2d:LJ (2.19) BS02 rna N/A GO:0000027 ... P62913 41577716
    992135 9i2d:LJ (2.19) BS03 rna N/A GO:0000027 ... P62913 41577716
    992136 9i2d:LL (2.19) BS01 rna N/A GO:0002181 ... P26373 41577716
    992137 9i2d:LL (2.19) BS02 rna N/A GO:0002181 ... P26373 41577716
    992138 9i2d:LM (2.19) BS01 rna N/A GO:0002181 ... P50914 41577716
    992139 9i2d:LN (2.19) BS01 rna N/A GO:0002181 ... P61313 41577716
    992140 9i2d:LN (2.19) BS02 rna N/A GO:0002181 ... P61313 41577716
    992141 9i2d:LO (2.19) BS01 rna N/A GO:0002181 ... P40429 41577716
    992142 9i2d:LP (2.19) BS01 rna N/A GO:0002181 ... P18621 41577716
    992143 9i2d:LP (2.19) BS02 rna N/A GO:0002181 ... P18621 41577716
    992144 9i2d:LQ (2.19) BS01 rna N/A GO:0002181 ... Q07020 41577716
    992145 9i2d:LR (2.19) BS01 rna N/A GO:0002181 ... P84098 41577716
    992146 9i2d:LR (2.19) BS02 rna N/A GO:0002181 ... P84098 41577716
    992147 9i2d:LS (2.19) BS01 rna N/A GO:0002181 ... Q02543 41577716
    992148 9i2d:LS (2.19) BS02 rna N/A GO:0002181 ... Q02543 41577716
    992149 9i2d:LT (2.19) BS01 rna N/A GO:0001650 ... P46778 41577716
    992150 9i2d:LT (2.19) BS02 rna N/A GO:0001650 ... P46778 41577716
    992151 9i2d:LU (2.19) BS01 rna N/A GO:0002181 ... P35268 41577716
    992152 9i2d:LV (2.19) BS01 rna N/A GO:0000122 ... P62829 41577716
    992153 9i2d:LW (2.19) BS01 rna N/A GO:0002181 ... P83731 41577716
    992154 9i2d:LX (2.19) BS01 rna N/A GO:0002181 ... P62750 41577716
    992155 9i2d:LX (2.19) BS02 rna N/A GO:0002181 ... P62750 41577716
    992156 9i2d:LY (2.19) BS01 rna N/A GO:0002181 ... P61254 41577716
    992157 9i2d:LY (2.19) BS02 rna N/A GO:0002181 ... P61254 41577716
    992158 9i2d:LZ (2.19) BS01 rna N/A GO:0002181 ... P61353 41577716
    992159 9i2d:La (2.19) BS01 rna N/A GO:0002181 ... P46776 41577716
    992160 9i2d:Lb (2.19) BS01 rna N/A GO:0002181 ... P47914 41577716
    992161 9i2d:Lc (2.19) BS01 rna N/A GO:0002181 ... P62888 41577716
    992162 9i2d:Ld (2.19) BS01 rna N/A GO:0002181 ... P62899 41577716
    992163 9i2d:Le (2.19) BS01 rna N/A GO:0002181 ... P62910 41577716
    992164 9i2d:Lf (2.19) BS01 rna N/A GO:0002181 ... P18077 41577716
    992165 9i2d:Lg (2.19) BS01 rna N/A GO:0002181 ... P49207 41577716
    992166 9i2d:Lg (2.19) BS02 ZN N/A GO:0002181 ... P49207 41577716
    992167 9i2d:Lh (2.19) BS01 rna N/A GO:0000463 ... P42766 41577716
    992168 9i2d:Lh (2.19) BS02 rna N/A GO:0000463 ... P42766 41577716
    992169 9i2d:Li (2.19) BS01 rna N/A GO:0002181 ... Q9Y3U8 41577716
    992170 9i2d:Lj (2.19) BS01 rna N/A GO:0000448 ... P61927 41577716
    992171 9i2d:Lj (2.19) BS02 rna N/A GO:0000448 ... P61927 41577716
    992172 9i2d:Lj (2.19) BS03 ZN N/A GO:0000448 ... P61927 41577716
    992173 9i2d:Lk (2.19) BS01 rna N/A GO:0002181 ... P63173 41577716
    992174 9i2d:Ll (2.19) BS01 rna N/A GO:0002181 ... P62891 41577716
    992175 9i2d:Ll (2.19) BS02 rna N/A GO:0002181 ... P62891 41577716
    992176 9i2d:Lm (2.19) BS01 rna N/A GO:0002181 ... P62987 41577716
    992177 9i2d:Lm (2.19) BS02 ZN N/A GO:0002181 ... P62987 41577716
    992178 9i2d:Lo (2.19) BS01 rna N/A GO:0002181 ... P83881 41577716
    992179 9i2d:Lo (2.19) BS02 rna N/A GO:0002181 ... P83881 41577716
    992180 9i2d:Lo (2.19) BS03 ZN N/A GO:0002181 ... P83881 41577716
    992181 9i2d:Lp (2.19) BS01 rna N/A GO:0002181 ... P61513 41577716
    992182 9i2d:Lp (2.19) BS02 ZN N/A GO:0002181 ... P61513 41577716
    992183 9i2d:Lr (2.19) BS01 rna N/A GO:0002181 ... P46779 41577716
    992184 9i2d:Ls (2.19) BS01 rna N/A GO:0002181 ... P05388 41577716
    992185 9i2d:Lt (2.19) BS01 rna N/A GO:0002181 ... P30050 41577716
    992186 9i2d:NA (2.19) BS01 rna N/A GO:0000122 ... Q13765 41577716
    992187 9i2d:NB (2.19) BS01 rna N/A N/A P20290 41577716
    992188 9i2d:SA (2.19) BS01 rna N/A GO:0000028 ... P08865 41577716
    992189 9i2d:SB (2.19) BS01 rna N/A GO:0002181 ... P61247 41577716
    992190 9i2d:SC (2.19) BS01 rna N/A GO:0002181 ... P15880 41577716
    992191 9i2d:SD (2.19) BS01 rna N/A GO:0001228 ... P23396 41577716
    992192 9i2d:SE (2.19) BS01 rna N/A GO:0002181 ... P62701 41577716
    992193 9i2d:SF (2.19) BS01 rna N/A GO:0002181 ... P46782 41577716
    992194 9i2d:SG (2.19) BS01 rna N/A GO:0002181 ... P62753 41577716
    992195 9i2d:SH (2.19) BS01 rna N/A GO:0002181 ... P62081 41577716
    992196 9i2d:SI (2.19) BS01 rna N/A GO:0002181 ... P62241 41577716
    992197 9i2d:SI (2.19) BS02 rna N/A GO:0002181 ... P62241 41577716
    992198 9i2d:SJ (2.19) BS01 rna N/A GO:0002181 ... P46781 41577716
    992199 9i2d:SK (2.19) BS01 rna N/A GO:0002181 ... P46783 41577716
    992200 9i2d:SL (2.19) BS01 rna N/A GO:0002181 ... P62280 41577716

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).