SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    992601 9i3l:0 (3.1) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    992602 9i3l:1 (3.1) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    992603 9i3l:2 (3.1) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    992604 9i3l:2 (3.1) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    992605 9i3l:3 (3.1) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    992606 9i3l:4 (3.1) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    992607 9i3l:6 (3.1) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    992608 9i3l:7 (3.1) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    992609 9i3l:8 (3.1) BS01 rna N/A GO:0005737 ... A0A2X1PTA3 N/A
    992610 9i3l:c (3.1) BS01 rna N/A GO:0000027 ... P60422 N/A
    992611 9i3l:d (3.1) BS01 rna N/A GO:0000027 ... P60438 N/A
    992612 9i3l:e (3.1) BS01 rna N/A GO:0001070 ... P60723 N/A
    992613 9i3l:f (3.1) BS01 rna N/A GO:0000027 ... P62399 N/A
    992614 9i3l:f (3.1) BS02 rna N/A GO:0000027 ... P62399 N/A
    992615 9i3l:f (3.1) BS03 rna N/A GO:0000027 ... P62399 N/A
    992616 9i3l:g (3.1) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    992617 9i3l:h (3.1) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    992618 9i3l:j (3.1) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    992619 9i3l:k (3.1) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    992620 9i3l:l (3.1) BS01 rna N/A GO:0002181 ... P02413 N/A
    992621 9i3l:m (3.1) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    992622 9i3l:m (3.1) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    992623 9i3l:n (3.1) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    992624 9i3l:o (3.1) BS01 rna N/A GO:0002181 ... P0C018 N/A
    992625 9i3l:o (3.1) BS02 rna N/A GO:0002181 ... P0C018 N/A
    992626 9i3l:p (3.1) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    992627 9i3l:q (3.1) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    992628 9i3l:r (3.1) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    992629 9i3l:s (3.1) BS01 rna N/A GO:0002181 ... P61175 N/A
    992630 9i3l:t (3.1) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    992631 9i3l:u (3.1) BS01 rna N/A GO:0000027 ... P60624 N/A
    992632 9i3l:w (3.1) BS01 rna N/A GO:0000027 ... P68919 N/A
    992633 9i3l:y (3.1) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    992634 9i3l:y (3.1) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    992635 9i3l:z (3.1) BS01 rna N/A N/A P13466 N/A
    992636 9i3l:z (3.1) BS02 rna N/A N/A P13466 N/A
    992637 9i3m:K1 (8.91) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992638 9i3m:K2 (8.91) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992639 9i3m:L1 (8.91) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992640 9i3m:L2 (8.91) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992641 9i3n:Q1 (7.58) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992642 9i3n:Q2 (7.58) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992643 9i3n:Q3 (7.58) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992644 9i3n:R1 (7.58) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992645 9i3n:R2 (7.58) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992646 9i3n:R3 (7.58) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992647 9i3o:P1 (4.7) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992648 9i3o:P2 (4.7) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992649 9i3o:P3 (4.7) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992650 9i3o:P4 (4.7) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992651 9i3o:Q1 (4.7) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992652 9i3o:Q2 (4.7) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992653 9i3o:Q3 (4.7) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992654 9i3o:Q4 (4.7) BS01 peptide N/A N/A A0A6F8TDQ5 41654547
    992655 9i3q:A (1.597) BS01 A1IZR N/A GO:0009159 ... O43598 41194588
    992656 9i3q:A (1.597) BS02 A1IZR N/A GO:0009159 ... O43598 41194588
    992657 9i3q:B (1.597) BS01 A1IZR N/A GO:0009159 ... O43598 41194588
    992658 9i3q:B (1.597) BS02 A1IZR N/A GO:0009159 ... O43598 41194588
    992659 9i3r:A (3.46) BS01 CLR N/A GO:0002407 ... Q8TD43 41372170
    992660 9i3r:A (3.46) BS02 CLR N/A GO:0002407 ... Q8TD43 41372170
    992661 9i3r:A (3.46) BS03 CLR N/A GO:0002407 ... Q8TD43 41372170
    992662 9i3r:A (3.46) BS04 CA N/A GO:0002407 ... Q8TD43 41372170
    992663 9i3r:A (3.46) BS05 CLR N/A GO:0002407 ... Q8TD43 41372170
    992664 9i3r:B (3.46) BS01 CLR N/A GO:0002407 ... Q8TD43 41372170
    992665 9i3r:B (3.46) BS02 CLR N/A GO:0002407 ... Q8TD43 41372170
    992666 9i3r:B (3.46) BS03 CLR N/A GO:0002407 ... Q8TD43 41372170
    992667 9i3r:B (3.46) BS04 CA N/A GO:0002407 ... Q8TD43 41372170
    992668 9i3r:B (3.46) BS05 CLR N/A GO:0002407 ... Q8TD43 41372170
    992669 9i3r:C (3.46) BS01 CLR N/A GO:0002407 ... Q8TD43 41372170
    992670 9i3r:C (3.46) BS02 CLR N/A GO:0002407 ... Q8TD43 41372170
    992671 9i3r:C (3.46) BS03 CLR N/A GO:0002407 ... Q8TD43 41372170
    992672 9i3r:C (3.46) BS04 CA N/A GO:0002407 ... Q8TD43 41372170
    992673 9i3r:C (3.46) BS05 CLR N/A GO:0002407 ... Q8TD43 41372170
    992674 9i3r:D (3.46) BS01 CLR N/A GO:0002407 ... Q8TD43 41372170
    992675 9i3r:D (3.46) BS02 CLR N/A GO:0002407 ... Q8TD43 41372170
    992676 9i3r:D (3.46) BS03 CLR N/A GO:0002407 ... Q8TD43 41372170
    992677 9i3r:D (3.46) BS04 CLR N/A GO:0002407 ... Q8TD43 41372170
    992678 9i3r:D (3.46) BS05 CA N/A GO:0002407 ... Q8TD43 41372170
    992679 9i3s:A (7.2) BS01 NAD N/A N/A P12860 N/A
    992680 9i3s:B (7.2) BS01 NAD N/A N/A P19866 N/A
    992681 9i3s:C (7.2) BS01 NAD N/A N/A P12860 N/A
    992682 9i3s:C (7.2) BS02 NAD N/A N/A P12860 N/A
    992683 9i3s:D (7.2) BS01 NAD N/A N/A P19866 N/A
    992684 9i3s:E (7.2) BS01 NAD N/A N/A P12860 N/A
    992685 9i3s:F (7.2) BS01 NAD N/A N/A P19866 N/A
    992686 9i3s:G (7.2) BS01 NAD N/A N/A P12860 N/A
    992687 9i3s:H (7.2) BS01 NAD N/A N/A P19866 N/A
    992688 9i3s:I (7.2) BS01 NAD N/A N/A P12860 N/A
    992689 9i3s:J (7.2) BS01 NAD N/A N/A P19866 N/A
    992690 9i3s:K (7.2) BS01 NAD N/A N/A P12860 N/A
    992691 9i3s:L (7.2) BS01 NAD N/A N/A P19866 N/A
    992692 9i3s:M (7.2) BS01 NAD N/A N/A P12860 N/A
    992693 9i3s:N (7.2) BS01 NAD N/A N/A P19866 N/A
    992694 9i3s:O (7.2) BS01 NAD N/A N/A P12860 N/A
    992695 9i3s:P (7.2) BS01 NAD N/A N/A P19866 N/A
    992696 9i3s:Q (7.2) BS01 NAD N/A N/A P12860 N/A
    992697 9i3s:R (7.2) BS01 NAD N/A N/A P19866 N/A
    992698 9i3s:S (7.2) BS01 NAD N/A N/A P12860 N/A
    992699 9i3s:T (7.2) BS01 NAD N/A N/A P19866 N/A
    992700 9i3v:A (3.51) BS01 peptide N/A N/A P98164 N/A
    992701 9i3v:A (3.51) BS02 peptide N/A N/A P98164 N/A
    992702 9i3v:A (3.51) BS03 peptide N/A N/A P98164 N/A
    992703 9i3v:A (3.51) BS04 peptide N/A N/A P98164 N/A
    992704 9i3v:A (3.51) BS05 CA N/A N/A P98164 N/A
    992705 9i3v:A (3.51) BS06 CA N/A N/A P98164 N/A
    992706 9i3v:A (3.51) BS07 CA N/A N/A P98164 N/A
    992707 9i3v:A (3.51) BS08 CA N/A N/A P98164 N/A
    992708 9i3v:A (3.51) BS09 CA N/A N/A P98164 N/A
    992709 9i3v:A (3.51) BS10 CA N/A N/A P98164 N/A
    992710 9i3v:A (3.51) BS11 CA N/A N/A P98164 N/A
    992711 9i3v:A (3.51) BS12 CA N/A N/A P98164 N/A
    992712 9i3v:A (3.51) BS13 CA N/A N/A P98164 N/A
    992713 9i3v:A (3.51) BS14 CA N/A N/A P98164 N/A
    992714 9i3v:A (3.51) BS15 CA N/A N/A P98164 N/A
    992715 9i3v:A (3.51) BS16 CA N/A N/A P98164 N/A
    992716 9i3v:B (3.51) BS01 peptide N/A N/A P98164 N/A
    992717 9i3v:B (3.51) BS02 peptide N/A N/A P98164 N/A
    992718 9i3v:B (3.51) BS03 peptide N/A N/A P98164 N/A
    992719 9i3v:B (3.51) BS04 CA N/A N/A P98164 N/A
    992720 9i3v:B (3.51) BS05 CA N/A N/A P98164 N/A
    992721 9i3v:B (3.51) BS06 CA N/A N/A P98164 N/A
    992722 9i3v:B (3.51) BS07 CA N/A N/A P98164 N/A
    992723 9i3v:B (3.51) BS08 CA N/A N/A P98164 N/A
    992724 9i3v:B (3.51) BS09 CA N/A N/A P98164 N/A
    992725 9i3v:B (3.51) BS10 CA N/A N/A P98164 N/A
    992726 9i3v:B (3.51) BS11 CA N/A N/A P98164 N/A
    992727 9i3v:B (3.51) BS12 CA N/A N/A P98164 N/A
    992728 9i3v:B (3.51) BS13 CA N/A N/A P98164 N/A
    992729 9i3v:B (3.51) BS14 CA N/A N/A P98164 N/A
    992730 9i3v:B (3.51) BS15 CA N/A N/A P98164 N/A
    992731 9i3v:B (3.51) BS16 CA N/A N/A P98164 N/A
    992732 9i3y:A (1.45) BS01 A1IZ6 N/A GO:0004622 ... Q99685 41290653
    992733 9i44:A (2.309) BS01 ZN N/A N/A P26578 N/A
    992734 9i44:A (2.309) BS02 MG N/A N/A P26578 N/A
    992735 9i4g:A (2.98) BS01 GLA N/A N/A N/A 40013737
    992736 9i4g:B (2.98) BS01 GLA N/A N/A N/A 40013737
    992737 9i4g:C (2.98) BS01 GLA N/A N/A N/A 40013737
    992738 9i4g:D (2.98) BS01 GLA N/A N/A N/A 40013737
    992739 9i4h:A (2.3) BS01 MN N/A GO:0000122 ... Q9NWT6 40344676
    992740 9i4h:A (2.3) BS02 A1IZ5 N/A GO:0000122 ... Q9NWT6 40344676
    992741 9i4i:C (2.63) BS01 SF4 N/A GO:0005515 ... P49821 N/A
    992742 9i4i:C (2.63) BS02 FMN N/A GO:0005515 ... P49821 N/A
    992743 9i4i:D (2.63) BS01 PLX N/A GO:0003954 ... O00217 N/A
    992744 9i4i:D (2.63) BS02 SF4 N/A GO:0003954 ... O00217 N/A
    992745 9i4i:D (2.63) BS03 SF4 N/A GO:0003954 ... O00217 N/A
    992746 9i4i:E (2.63) BS01 SF4 N/A GO:0002020 ... O75251 N/A
    992747 9i4i:E (2.63) BS02 PLX N/A GO:0002020 ... O75251 N/A
    992748 9i4i:F (2.63) BS01 8Q1 N/A GO:0005739 ... P56556 N/A
    992749 9i4i:J (2.63) BS01 NDP N/A GO:0003954 ... Q16795 N/A
    992750 9i4i:M (2.63) BS01 SF4 N/A GO:0005515 ... P28331 N/A
    992751 9i4i:M (2.63) BS02 SF4 N/A GO:0005515 ... P28331 N/A
    992752 9i4i:M (2.63) BS03 FES N/A GO:0005515 ... P28331 N/A
    992753 9i4i:O (2.63) BS01 FES N/A GO:0003954 ... P19404 N/A
    992754 9i4i:Q (2.63) BS01 SF4 N/A GO:0003954 ... O75306 N/A
    992755 9i4i:T (2.63) BS01 ZN N/A GO:0005739 ... O75380 N/A
    992756 9i4i:U (2.63) BS01 PLX N/A GO:0005515 ... O95167 N/A
    992757 9i4i:V (2.63) BS01 PLX N/A GO:0005515 ... Q86Y39 N/A
    992758 9i4i:X (2.63) BS01 8Q1 N/A GO:0000035 ... O14561 N/A
    992759 9i4i:g (2.63) BS01 PLX N/A GO:0005515 ... O95298 N/A
    992760 9i4i:g (2.63) BS02 PLX N/A GO:0005515 ... O95298 N/A
    992761 9i4i:i (2.63) BS01 PLX N/A GO:0001666 ... P03891 N/A
    992762 9i4i:j (2.63) BS01 PLX N/A GO:0005515 ... P03897 N/A
    992763 9i4i:o (2.63) BS01 PLX N/A GO:0005739 ... O95168 N/A
    992764 9i4i:p (2.63) BS01 8Q1 N/A GO:0005515 ... Q9Y6M9 N/A
    992765 9i4i:r (2.63) BS01 PLX N/A GO:0001666 ... P03905 N/A
    992766 9i4i:s (2.63) BS01 PLX N/A GO:0003954 ... P03886 N/A
    992767 9i4i:w (2.63) BS01 DGT N/A GO:0005737 ... O95299 N/A
    992768 9i4j:A (1.74) BS01 A1I0A N/A N/A Q8KRS7 N/A
    992769 9i4j:A (1.74) BS02 A1I0B N/A N/A Q8KRS7 N/A
    992770 9i4n:A (1.069) BS01 A1I0L N/A N/A P17931 N/A
    992771 9i4n:A (1.069) BS02 GAL N/A N/A P17931 N/A
    992772 9i4q:A (2.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992773 9i4q:B (2.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992774 9i4q:C (2.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992775 9i4q:D (2.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992776 9i4q:E (2.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992777 9i4q:F (2.75) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992778 9i4r:B (1.84) BS01 peptide N/A GO:0005576 ... P22629 N/A
    992779 9i4r:C (1.84) BS01 peptide N/A GO:0005576 ... P22629 N/A
    992780 9i4r:D (1.84) BS01 peptide N/A GO:0005576 ... P22629 N/A
    992781 9i4r:D (1.84) BS02 peptide N/A GO:0005576 ... P22629 N/A
    992782 9i4r:E (1.84) BS01 peptide N/A GO:0005576 ... P22629 N/A
    992783 9i4r:E (1.84) BS02 peptide N/A GO:0005576 ... P22629 N/A
    992784 9i4s:A (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992785 9i4s:A (2.4) BS02 NO N/A GO:0004601 ... A0A7U9HFU5 40843530
    992786 9i4s:B (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992787 9i4s:B (2.4) BS02 NO N/A GO:0004601 ... A0A7U9HFU5 40843530
    992788 9i4s:C (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992789 9i4s:D (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992790 9i4s:D (2.4) BS02 NO N/A GO:0004601 ... A0A7U9HFU5 40843530
    992791 9i4s:E (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992792 9i4s:E (2.4) BS02 NO N/A GO:0004601 ... A0A7U9HFU5 40843530
    992793 9i4s:F (2.4) BS01 HEM N/A GO:0004601 ... A0A7U9HFU5 40843530
    992794 9i4s:F (2.4) BS02 NO N/A GO:0004601 ... A0A7U9HFU5 40843530
    992795 9i4t:A (2.44) BS01 CLA N/A N/A N/A N/A
    992796 9i4t:A (2.44) BS02 PHO N/A N/A N/A N/A
    992797 9i4t:A (2.44) BS03 CLA N/A N/A N/A N/A
    992798 9i4t:A (2.44) BS04 FE2 N/A N/A N/A N/A
    992799 9i4t:A (2.44) BS05 BCT N/A N/A N/A N/A
    992800 9i4t:A (2.44) BS06 OEX N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).