SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    995401 9igt:7 (5.96) BS01 rna N/A N/A P46199 N/A
    995402 9igt:7 (5.96) BS02 GDP N/A N/A P46199 N/A
    995403 9igt:B (5.96) BS01 rna N/A N/A Q9Y399 N/A
    995404 9igt:B (5.96) BS02 MG N/A N/A Q9Y399 N/A
    995405 9igt:C (5.96) BS01 rna N/A N/A Q96EL2 N/A
    995406 9igt:D (5.96) BS01 rna N/A N/A P82675 N/A
    995407 9igt:E (5.96) BS01 rna N/A N/A P82932 N/A
    995408 9igt:F (5.96) BS01 rna N/A N/A Q9Y2R9 N/A
    995409 9igt:G (5.96) BS01 rna N/A N/A P82933 N/A
    995410 9igt:H (5.96) BS01 rna N/A N/A P82664 N/A
    995411 9igt:I (5.96) BS01 rna N/A N/A P82912 N/A
    995412 9igt:J (5.96) BS01 rna N/A N/A O15235 N/A
    995413 9igt:K (5.96) BS01 rna N/A N/A O60783 N/A
    995414 9igt:L (5.96) BS01 rna N/A N/A P82914 N/A
    995415 9igt:L (5.96) BS02 NAD N/A N/A P82914 N/A
    995416 9igt:M (5.96) BS01 rna N/A N/A Q9Y3D3 N/A
    995417 9igt:N (5.96) BS01 rna N/A N/A Q9Y2R5 N/A
    995418 9igt:O (5.96) BS01 rna N/A N/A Q9Y676 N/A
    995419 9igt:O (5.96) BS02 ZN N/A N/A Q9Y676 N/A
    995420 9igt:P (5.96) BS01 rna N/A N/A Q9Y3D5 N/A
    995421 9igt:P (5.96) BS02 FES N/A N/A Q9Y3D5 N/A
    995422 9igt:Q (5.96) BS01 rna N/A N/A A0A2J8VEN6 N/A
    995423 9igt:S (5.96) BS01 rna N/A N/A Q9Y3D9 N/A
    995424 9igt:T (5.96) BS01 rna N/A N/A P82663 N/A
    995425 9igt:T (5.96) BS02 FES N/A N/A P82663 N/A
    995426 9igt:U (5.96) BS01 rna N/A N/A Q9BYN8 N/A
    995427 9igt:V (5.96) BS01 rna N/A N/A Q92552 N/A
    995428 9igt:X (5.96) BS01 rna N/A N/A P51398 N/A
    995429 9igt:X (5.96) BS02 ATP N/A N/A P51398 N/A
    995430 9igt:X (5.96) BS03 GDP N/A N/A P51398 N/A
    995431 9igt:Z (5.96) BS01 rna N/A N/A Q9Y291 N/A
    995432 9igt:a (5.96) BS01 rna N/A N/A Q8N0V3 N/A
    995433 9igt:b (5.96) BS01 rna N/A N/A A6NJ78 N/A
    995434 9igu:0 (3.64) BS01 rna N/A N/A P82930 N/A
    995435 9igu:3 (3.64) BS01 rna N/A N/A Q9NWT8 N/A
    995436 9igu:B (3.64) BS01 rna N/A N/A Q9Y399 N/A
    995437 9igu:C (3.64) BS01 rna N/A N/A Q96EL2 N/A
    995438 9igu:D (3.64) BS01 rna N/A N/A P82675 N/A
    995439 9igu:E (3.64) BS01 rna N/A N/A P82932 N/A
    995440 9igu:F (3.64) BS01 rna N/A N/A Q9Y2R9 N/A
    995441 9igu:G (3.64) BS01 rna N/A N/A P82933 N/A
    995442 9igu:G (3.64) BS02 MG N/A N/A P82933 N/A
    995443 9igu:H (3.64) BS01 rna N/A N/A P82664 N/A
    995444 9igu:I (3.64) BS01 rna N/A N/A P82912 N/A
    995445 9igu:J (3.64) BS01 rna N/A N/A O15235 N/A
    995446 9igu:K (3.64) BS01 rna N/A N/A O60783 N/A
    995447 9igu:L (3.64) BS01 rna N/A N/A P82914 N/A
    995448 9igu:L (3.64) BS02 NAD N/A N/A P82914 N/A
    995449 9igu:M (3.64) BS01 rna N/A N/A Q9Y3D3 N/A
    995450 9igu:M (3.64) BS02 FES N/A N/A Q9Y3D3 N/A
    995451 9igu:N (3.64) BS01 rna N/A N/A Q9Y2R5 N/A
    995452 9igu:O (3.64) BS01 rna N/A N/A Q9Y676 N/A
    995453 9igu:O (3.64) BS02 ZN N/A N/A Q9Y676 N/A
    995454 9igu:P (3.64) BS01 rna N/A N/A Q9Y3D5 N/A
    995455 9igu:P (3.64) BS02 FES N/A N/A Q9Y3D5 N/A
    995456 9igu:Q (3.64) BS01 rna N/A N/A A0A2J8VEN6 N/A
    995457 9igu:S (3.64) BS01 rna N/A N/A Q9Y3D9 N/A
    995458 9igu:T (3.64) BS01 rna N/A N/A P82663 N/A
    995459 9igu:T (3.64) BS02 FES N/A N/A P82663 N/A
    995460 9igu:U (3.64) BS01 rna N/A N/A Q9BYN8 N/A
    995461 9igu:V (3.64) BS01 rna N/A N/A Q92552 N/A
    995462 9igu:X (3.64) BS01 rna N/A N/A P51398 N/A
    995463 9igu:X (3.64) BS02 ATP N/A N/A P51398 N/A
    995464 9igu:X (3.64) BS03 GDP N/A N/A P51398 N/A
    995465 9igu:Z (3.64) BS01 rna N/A N/A Q9Y291 N/A
    995466 9igu:a (3.64) BS01 rna N/A N/A Q8N0V3 N/A
    995467 9igu:b (3.64) BS01 rna N/A N/A A6NJ78 N/A
    995468 9igw:A (3.32) BS01 dna N/A GO:0000786 ... P68431 41444611
    995469 9igw:A (3.32) BS02 dna N/A GO:0000786 ... P68431 41444611
    995470 9igw:B (3.32) BS01 dna N/A GO:0000781 ... P62805 41444611
    995471 9igw:C (3.32) BS01 dna N/A GO:0000786 ... P04908 41444611
    995472 9igw:C (3.32) BS02 dna N/A GO:0000786 ... P04908 41444611
    995473 9igw:D (3.32) BS01 dna N/A GO:0000786 ... P06899 41444611
    995474 9igw:D (3.32) BS02 dna N/A GO:0000786 ... P06899 41444611
    995475 9igw:E (3.32) BS01 dna N/A GO:0000786 ... P68431 41444611
    995476 9igw:E (3.32) BS02 dna N/A GO:0000786 ... P68431 41444611
    995477 9igw:F (3.32) BS01 dna N/A GO:0000781 ... P62805 41444611
    995478 9igw:F (3.32) BS02 dna N/A GO:0000781 ... P62805 41444611
    995479 9igw:G (3.32) BS01 dna N/A GO:0000786 ... P04908 41444611
    995480 9igw:G (3.32) BS02 dna N/A GO:0000786 ... P04908 41444611
    995481 9igw:H (3.32) BS01 dna N/A GO:0000786 ... P06899 41444611
    995482 9igw:H (3.32) BS02 dna N/A GO:0000786 ... P06899 41444611
    995483 9igw:K (3.32) BS01 dna N/A GO:0000723 ... P12956 41444611
    995484 9igw:L (3.32) BS01 dna N/A GO:0000723 ... P13010 41444611
    995485 9igw:L (3.32) BS02 dna N/A GO:0000723 ... P13010 41444611
    995486 9igx:A (3.56) BS01 dna N/A N/A P68431 41444611
    995487 9igx:A (3.56) BS02 dna N/A N/A P68431 41444611
    995488 9igx:B (3.56) BS01 dna N/A N/A P62805 41444611
    995489 9igx:B (3.56) BS02 dna N/A N/A P62805 41444611
    995490 9igx:C (3.56) BS01 dna N/A N/A P04908 41444611
    995491 9igx:C (3.56) BS02 dna N/A N/A P04908 41444611
    995492 9igx:D (3.56) BS01 dna N/A N/A P06899 41444611
    995493 9igx:D (3.56) BS02 dna N/A N/A P06899 41444611
    995494 9igx:E (3.56) BS01 dna N/A N/A P68431 41444611
    995495 9igx:E (3.56) BS02 dna N/A N/A P68431 41444611
    995496 9igx:F (3.56) BS01 dna N/A N/A P62805 41444611
    995497 9igx:F (3.56) BS02 dna N/A N/A P62805 41444611
    995498 9igx:G (3.56) BS01 dna N/A N/A P04908 41444611
    995499 9igx:G (3.56) BS02 dna N/A N/A P04908 41444611
    995500 9igx:H (3.56) BS01 dna N/A N/A P06899 41444611
    995501 9igx:H (3.56) BS02 dna N/A N/A P06899 41444611
    995502 9igx:K (3.56) BS01 dna N/A N/A P12956 41444611
    995503 9igx:K (3.56) BS02 dna N/A N/A P12956 41444611
    995504 9igx:L (3.56) BS01 dna N/A N/A P13010 41444611
    995505 9igx:L (3.56) BS02 dna N/A N/A P13010 41444611
    995506 9igx:M (3.56) BS01 dna N/A N/A P12956 41444611
    995507 9igx:M (3.56) BS02 dna N/A N/A P12956 41444611
    995508 9igx:N (3.56) BS01 dna N/A N/A P13010 41444611
    995509 9igx:N (3.56) BS02 dna N/A N/A P13010 41444611
    995510 9ih0:A (2.26) BS01 A1I43 N/A GO:0004867 ... Q8IW75 40975878
    995511 9ih0:B (2.26) BS01 A1I43 N/A GO:0004867 ... Q8IW75 40975878
    995512 9ih9:A (1.7) BS01 peptide N/A N/A Q14145 N/A
    995513 9ih9:B (1.7) BS01 peptide N/A N/A Q14145 N/A
    995514 9ih9:C (1.7) BS01 peptide N/A N/A Q14145 N/A
    995515 9ihd:A (2.97) BS01 dna N/A GO:0000786 ... P84233 40963017
    995516 9ihd:A (2.97) BS02 dna N/A GO:0000786 ... P84233 40963017
    995517 9ihd:B (2.97) BS01 dna N/A GO:0003677 ... P62799 40963017
    995518 9ihd:B (2.97) BS02 dna N/A GO:0003677 ... P62799 40963017
    995519 9ihd:C (2.97) BS01 dna N/A GO:0000786 ... P06897 40963017
    995520 9ihd:C (2.97) BS02 dna N/A GO:0000786 ... P06897 40963017
    995521 9ihd:D (2.97) BS01 dna N/A GO:0000786 ... P02281 40963017
    995522 9ihd:D (2.97) BS02 dna N/A GO:0000786 ... P02281 40963017
    995523 9ihd:E (2.97) BS01 dna N/A GO:0000786 ... P84233 40963017
    995524 9ihd:E (2.97) BS02 dna N/A GO:0000786 ... P84233 40963017
    995525 9ihd:F (2.97) BS01 dna N/A GO:0003677 ... P62799 40963017
    995526 9ihd:F (2.97) BS02 dna N/A GO:0003677 ... P62799 40963017
    995527 9ihd:G (2.97) BS01 dna N/A GO:0000786 ... P06897 40963017
    995528 9ihd:G (2.97) BS02 dna N/A GO:0000786 ... P06897 40963017
    995529 9ihd:H (2.97) BS01 dna N/A GO:0000786 ... P02281 40963017
    995530 9ihd:H (2.97) BS02 dna N/A GO:0000786 ... P02281 40963017
    995531 9ihd:N (2.97) BS01 HEM N/A GO:0004601 ... P05164 40963017
    995532 9ihe:A (2.95) BS01 dna N/A GO:0000786 ... P84233 40963017
    995533 9ihe:A (2.95) BS02 dna N/A GO:0000786 ... P84233 40963017
    995534 9ihe:B (2.95) BS01 dna N/A GO:0003677 ... P62799 40963017
    995535 9ihe:B (2.95) BS02 dna N/A GO:0003677 ... P62799 40963017
    995536 9ihe:C (2.95) BS01 dna N/A GO:0000786 ... P06897 40963017
    995537 9ihe:C (2.95) BS02 dna N/A GO:0000786 ... P06897 40963017
    995538 9ihe:D (2.95) BS01 dna N/A GO:0000786 ... P02281 40963017
    995539 9ihe:D (2.95) BS02 dna N/A GO:0000786 ... P02281 40963017
    995540 9ihe:E (2.95) BS01 dna N/A GO:0000786 ... P84233 40963017
    995541 9ihe:E (2.95) BS02 dna N/A GO:0000786 ... P84233 40963017
    995542 9ihe:F (2.95) BS01 dna N/A GO:0003677 ... P62799 40963017
    995543 9ihe:F (2.95) BS02 dna N/A GO:0003677 ... P62799 40963017
    995544 9ihe:G (2.95) BS01 dna N/A GO:0000786 ... P06897 40963017
    995545 9ihe:G (2.95) BS02 dna N/A GO:0000786 ... P06897 40963017
    995546 9ihe:H (2.95) BS01 dna N/A GO:0000786 ... P02281 40963017
    995547 9ihe:H (2.95) BS02 dna N/A GO:0000786 ... P02281 40963017
    995548 9ihe:K (2.95) BS01 HEM N/A GO:0004601 ... P05164 40963017
    995549 9ihe:L (2.95) BS01 HEM N/A GO:0004601 ... P05164 40963017
    995550 9ihe:M (2.95) BS01 HEM N/A GO:0004601 ... P05164 40963017
    995551 9ihe:N (2.95) BS01 HEM N/A GO:0004601 ... P05164 40963017
    995552 9ihf:A (3.16) BS01 dna N/A GO:0000786 ... P84233 40963017
    995553 9ihf:A (3.16) BS02 dna N/A GO:0000786 ... P84233 40963017
    995554 9ihf:B (3.16) BS01 dna N/A GO:0003677 ... P62799 40963017
    995555 9ihf:B (3.16) BS02 dna N/A GO:0003677 ... P62799 40963017
    995556 9ihf:C (3.16) BS01 dna N/A GO:0000786 ... P06897 40963017
    995557 9ihf:C (3.16) BS02 dna N/A GO:0000786 ... P06897 40963017
    995558 9ihf:D (3.16) BS01 dna N/A GO:0000786 ... P02281 40963017
    995559 9ihf:D (3.16) BS02 dna N/A GO:0000786 ... P02281 40963017
    995560 9ihf:E (3.16) BS01 dna N/A GO:0000786 ... P84233 40963017
    995561 9ihf:E (3.16) BS02 dna N/A GO:0000786 ... P84233 40963017
    995562 9ihf:F (3.16) BS01 dna N/A GO:0003677 ... P62799 40963017
    995563 9ihf:F (3.16) BS02 dna N/A GO:0003677 ... P62799 40963017
    995564 9ihf:G (3.16) BS01 dna N/A GO:0000786 ... P06897 40963017
    995565 9ihf:G (3.16) BS02 dna N/A GO:0000786 ... P06897 40963017
    995566 9ihf:H (3.16) BS01 dna N/A GO:0000786 ... P02281 40963017
    995567 9ihf:H (3.16) BS02 dna N/A GO:0000786 ... P02281 40963017
    995568 9ihf:K (3.16) BS01 HEM N/A GO:0004601 ... P05164 40963017
    995569 9ihf:L (3.16) BS01 HEM N/A GO:0004601 ... P05164 40963017
    995570 9ihf:M (3.16) BS01 HEM N/A GO:0004601 ... P05164 40963017
    995571 9ihf:N (3.16) BS01 BMA N/A GO:0004601 ... P05164 40963017
    995572 9ihf:N (3.16) BS02 HEM N/A GO:0004601 ... P05164 40963017
    995573 9ihf:O (3.16) BS01 HEM N/A GO:0004601 ... P05164 40963017
    995574 9ihf:P (3.16) BS01 BMA N/A GO:0004601 ... P05164 40963017
    995575 9ihf:P (3.16) BS02 MAN N/A GO:0004601 ... P05164 40963017
    995576 9ihf:P (3.16) BS03 HEM N/A GO:0004601 ... P05164 40963017
    995577 9ihg:A (1.08) BS01 SYA N/A GO:0000785 ... P19784 N/A
    995578 9ihg:A (1.08) BS02 SYA N/A GO:0000785 ... P19784 N/A
    995579 9ihi:A (1.23) BS01 SY4 N/A GO:0000785 ... P19784 N/A
    995580 9ihi:A (1.23) BS02 3NG N/A GO:0000785 ... P19784 N/A
    995581 9iho:B (3.8) BS01 SF4 N/A GO:0005739 ... E1UWB5 41032597
    995582 9iho:D (3.8) BS01 SF4 N/A GO:0005739 ... E1UWA8 41032597
    995583 9iho:G (3.8) BS01 SF4 N/A GO:0008137 ... E1UWA6 41032597
    995584 9iho:G (3.8) BS02 SF4 N/A GO:0008137 ... E1UWA6 41032597
    995585 9iho:I (3.8) BS01 SF4 N/A GO:0003954 ... E1UWB3 41032597
    995586 9iho:I (3.8) BS02 SF4 N/A GO:0003954 ... E1UWB3 41032597
    995587 9iho:P (3.8) BS01 NDP N/A GO:0005739 ... E1UWA9 41032597
    995588 9iho:R (3.8) BS01 ZN N/A GO:0005739 ... E1UWB7 41032597
    995589 9iho:W (3.8) BS01 EHZ N/A GO:0005743 ... E1UWD6 41032597
    995590 9iho:n (3.8) BS01 EHZ N/A GO:0005743 ... E1UWD2 41032597
    995591 9ihp:B (3.34) BS01 SF4 N/A GO:0005739 ... E1UWB5 41032597
    995592 9ihp:D (3.34) BS01 SF4 N/A GO:0005739 ... E1UWA8 41032597
    995593 9ihp:E (3.34) BS01 FES N/A GO:0005743 ... E1UWB2 41032597
    995594 9ihp:F (3.34) BS01 SF4 N/A GO:0005739 ... E1UWA7 41032597
    995595 9ihp:F (3.34) BS02 FMN N/A GO:0005739 ... E1UWA7 41032597
    995596 9ihp:G (3.34) BS01 FES N/A GO:0008137 ... E1UWA6 41032597
    995597 9ihp:G (3.34) BS02 SF4 N/A GO:0008137 ... E1UWA6 41032597
    995598 9ihp:G (3.34) BS03 SF4 N/A GO:0008137 ... E1UWA6 41032597
    995599 9ihp:I (3.34) BS01 SF4 N/A GO:0003954 ... E1UWB3 41032597
    995600 9ihp:I (3.34) BS02 SF4 N/A GO:0003954 ... E1UWB3 41032597

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).