SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    996801 9ip0:D (4.0) BS01 ADP N/A GO:0005524 ... Q6F2Y7 40324502
    996802 9ip0:D (4.0) BS02 ADP N/A GO:0005524 ... Q6F2Y7 40324502
    996803 9ip0:E (4.0) BS01 ADP N/A GO:0005524 ... Q6F2Y7 40324502
    996804 9ip0:E (4.0) BS02 ADP N/A GO:0005524 ... Q6F2Y7 40324502
    996805 9ip0:F (4.0) BS01 ADP N/A GO:0005524 ... Q6F2Y7 40324502
    996806 9ip0:F (4.0) BS02 ADP N/A GO:0005524 ... Q6F2Y7 40324502
    996807 9ip0:G (4.0) BS01 ADP N/A GO:0005524 ... Q6F2Y7 40324502
    996808 9ip0:G (4.0) BS02 ADP N/A GO:0005524 ... Q6F2Y7 40324502
    996809 9ip2:B (2.7) BS01 peptide N/A GO:0019013 ... P35259 40164610
    996810 9ip2:D (2.7) BS01 peptide N/A GO:0019013 ... P35259 40164610
    996811 9ip3:A (3.1) BS01 peptide N/A GO:0003968 ... Q05318 40164610
    996812 9ip3:A (3.1) BS02 ZN N/A GO:0003968 ... Q05318 40164610
    996813 9ip3:B (3.1) BS01 peptide N/A GO:0008643 ... Q05127 40164610
    996814 9ip3:D (3.1) BS01 peptide N/A GO:0008643 ... Q05127 40164610
    996815 9ip4:B (2.84) BS01 peptide N/A GO:0008643 ... P35259 40164610
    996816 9ip4:D (2.84) BS01 peptide N/A GO:0008643 ... P35259 40164610
    996817 9ipp:A (2.26) BS01 JRY N/A GO:0008233 ... T2BB45 39106601
    996818 9ipp:B (2.26) BS01 JRY N/A GO:0008233 ... T2BB45 39106601
    996819 9ipt:A (2.5) BS01 SPD N/A GO:0000976 ... A0A7U3Y110 40162807
    996820 9ipt:B (2.5) BS01 SPD N/A GO:0000976 ... A0A7U3Y110 40162807
    996821 9ipu:A (4.3) BS01 dna N/A GO:0000786 ... Q71DI3 39363740
    996822 9ipu:A (4.3) BS02 dna N/A GO:0000786 ... Q71DI3 39363740
    996823 9ipu:B (4.3) BS01 dna N/A GO:0000781 ... P62805 39363740
    996824 9ipu:B (4.3) BS02 dna N/A GO:0000781 ... P62805 39363740
    996825 9ipu:C (4.3) BS01 dna N/A GO:0000786 ... P04908 39363740
    996826 9ipu:C (4.3) BS02 dna N/A GO:0000786 ... P04908 39363740
    996827 9ipu:D (4.3) BS01 dna N/A GO:0000786 ... O60814 39363740
    996828 9ipu:D (4.3) BS02 dna N/A GO:0000786 ... O60814 39363740
    996829 9ipu:E (4.3) BS01 dna N/A GO:0000786 ... Q71DI3 39363740
    996830 9ipu:E (4.3) BS02 dna N/A GO:0000786 ... Q71DI3 39363740
    996831 9ipu:F (4.3) BS01 dna N/A GO:0000781 ... P62805 39363740
    996832 9ipu:F (4.3) BS02 dna N/A GO:0000781 ... P62805 39363740
    996833 9ipu:G (4.3) BS01 dna N/A GO:0000786 ... P04908 39363740
    996834 9ipu:G (4.3) BS02 dna N/A GO:0000786 ... P04908 39363740
    996835 9ipu:H (4.3) BS01 dna N/A GO:0000786 ... O60814 39363740
    996836 9ipu:H (4.3) BS02 dna N/A GO:0000786 ... O60814 39363740
    996837 9ipu:I (4.3) BS01 dna N/A GO:0000785 ... P07305 39363740
    996838 9ipu:I (4.3) BS02 dna N/A GO:0000785 ... P07305 39363740
    996839 9ipu:L (4.3) BS01 ZN N/A N/A Q8IYW5 39363740
    996840 9ipu:L (4.3) BS02 ZN N/A N/A Q8IYW5 39363740
    996841 9ipv:R (2.53) BS01 A1D9A N/A GO:0002430 ... Q16581 40195498
    996842 9ipw:K (3.0) BS01 A1L2Z N/A GO:0006511 ... Q15369 39881207
    996843 9ipy:R (3.5) BS01 A1D9A N/A GO:0004875 ... Q16581 40195498
    996844 9iq4:B (2.42) BS01 SAH N/A GO:0006370 ... A0A2X0RUW3 N/A
    996845 9iq9:A () BS01 MN N/A N/A N/A N/A
    996846 9iq9:A () BS02 MN N/A N/A N/A N/A
    996847 9iq9:B () BS01 CU1 N/A N/A N/A N/A
    996848 9iq9:B () BS02 CU1 N/A N/A N/A N/A
    996849 9iq9:B () BS03 CU1 N/A N/A N/A N/A
    996850 9iqc:A (1.69) BS01 FAD N/A GO:0000166 ... Q7Y590 N/A
    996851 9iqc:A (1.69) BS02 DCM N/A GO:0000166 ... Q7Y590 N/A
    996852 9iqe:B (3.78) BS01 ADP N/A GO:0005524 ... P9WQJ3 40295516
    996853 9iqf:B (4.01) BS01 ADP N/A GO:0005524 ... P9WQJ3 40295516
    996854 9iqg:A (2.7) BS01 ATP N/A GO:0005524 ... P9WQJ1 40295516
    996855 9iqg:A (2.7) BS02 MG N/A GO:0005524 ... P9WQJ1 40295516
    996856 9iqg:A (2.7) BS03 ADP N/A GO:0005524 ... P9WQJ1 40295516
    996857 9iqg:B (2.7) BS01 ATP N/A GO:0005524 ... P9WQJ3 40295516
    996858 9iqg:B (2.7) BS02 ADP N/A GO:0005524 ... P9WQJ3 40295516
    996859 9iqg:B (2.7) BS03 MG N/A GO:0005524 ... P9WQJ3 40295516
    996860 9iqh:A (2.27) BS01 PLP N/A GO:0003824 ... B7J4S3 39802632
    996861 9iqh:A (2.27) BS02 PLP N/A GO:0003824 ... B7J4S3 39802632
    996862 9iqh:B (2.27) BS01 PLP N/A GO:0003824 ... B7J4S3 39802632
    996863 9iqh:B (2.27) BS02 PLP N/A GO:0003824 ... B7J4S3 39802632
    996864 9iqi:A (2.44) BS01 FAD N/A GO:0006631 ... Q2G1P3 N/A
    996865 9iqi:C (2.44) BS01 FAD N/A GO:0006631 ... Q2G1P3 N/A
    996866 9iqj:A (1.64) BS01 EIC N/A GO:0006631 ... Q2G1P3 N/A
    996867 9iqj:B (1.64) BS01 EIC N/A GO:0006631 ... Q2G1P3 N/A
    996868 9iqj:C (1.64) BS01 EIC N/A GO:0006631 ... Q2G1P3 N/A
    996869 9iqk:A (1.8) BS01 A1D9Z N/A N/A A0A5Q0H2K6 N/A
    996870 9iqk:B (1.8) BS01 A1D9Z N/A N/A A0A5Q0H2K6 N/A
    996871 9iql:A (1.65) BS01 A1D90 N/A N/A A0A5Q0H2K6 N/A
    996872 9iql:B (1.65) BS01 A1D90 N/A N/A A0A5Q0H2K6 N/A
    996873 9iqm:A (1.7) BS01 A1D90 N/A N/A G8X1I4 N/A
    996874 9iqn:A (2.0) BS01 A1D91 N/A N/A G8X1I4 N/A
    996875 9iqq:A (2.7) BS01 GSH N/A GO:0003723 ... P14618 41215470
    996876 9iqq:B (2.7) BS01 GSH N/A GO:0003723 ... P14618 41215470
    996877 9iqq:B (2.7) BS02 FBP N/A GO:0003723 ... P14618 41215470
    996878 9iqq:C (2.7) BS01 FBP N/A GO:0003723 ... P14618 41215470
    996879 9iqq:D (2.7) BS01 FBP N/A GO:0003723 ... P14618 41215470
    996880 9iqt:R (2.9) BS01 NIO N/A GO:0001781 ... Q8TDS4 39299383
    996881 9iqu:A (1.96) BS01 DCM N/A GO:0000166 ... Q7Y590 N/A
    996882 9iqx:A (3.37) BS01 P5S N/A GO:0005216 ... Q9HBA0 40518994
    996883 9iqx:A (3.37) BS02 U6L N/A GO:0005216 ... Q9HBA0 40518994
    996884 9iqx:C (3.37) BS01 P5S N/A GO:0005216 ... Q9HBA0 40518994
    996885 9iqx:C (3.37) BS02 U6L N/A GO:0005216 ... Q9HBA0 40518994
    996886 9iqx:E (3.37) BS01 GDP N/A GO:0000281 ... P61586 40518994
    996887 9iqx:E (3.37) BS02 MG N/A GO:0000281 ... P61586 40518994
    996888 9iqx:F (3.37) BS01 GDP N/A GO:0000281 ... P61586 40518994
    996889 9iqx:F (3.37) BS02 MG N/A GO:0000281 ... P61586 40518994
    996890 9iqy:J (3.16) BS01 GDP N/A GO:0000281 ... P61586 40518994
    996891 9iqy:J (3.16) BS02 MG N/A GO:0000281 ... P61586 40518994
    996892 9ir0:A (2.46) BS01 UDP N/A GO:0000166 ... Q7Y5D5 N/A
    996893 9ir0:B (2.46) BS01 UDP N/A GO:0000166 ... Q7Y5D5 N/A
    996894 9ir2:A (1.31) BS01 FMN N/A GO:0000166 ... Q7Y590 N/A
    996895 9ir2:A (1.31) BS02 DCM N/A GO:0000166 ... Q7Y590 N/A
    996896 9ir3:A (3.19) BS01 ZN N/A GO:0000166 ... Q997F0 39627254
    996897 9ir3:A (3.19) BS02 ZN N/A GO:0000166 ... Q997F0 39627254
    996898 9ir4:A (3.01) BS01 ZN N/A GO:0000166 ... Q997F0 39627254
    996899 9ir4:A (3.01) BS02 ZN N/A GO:0000166 ... Q997F0 39627254
    996900 9ir6:A (2.43) BS01 EPZ N/A GO:0005524 ... A0A0M6X1Q9 40152026
    996901 9ir6:B (2.43) BS01 EPZ N/A GO:0005524 ... A0A0M6X1Q9 40152026
    996902 9ir8:A (2.12) BS01 A1D7M N/A N/A A0A8F2ZG71 41388583
    996903 9ir8:B (2.12) BS01 A1D7M N/A N/A A0A8F2ZG71 41388583
    996904 9ir8:C (2.12) BS01 A1D7M N/A N/A A0A8F2ZG71 41388583
    996905 9ir8:D (2.12) BS01 A1D7M N/A N/A A0A8F2ZG71 41388583
    996906 9ir9:A (1.49) BS01 A1D7M N/A N/A P0DTC1 41388583
    996907 9ira:A (1.66) BS01 A1D7M N/A N/A P0C6V3 41388583
    996908 9ira:B (1.66) BS01 A1D7M N/A N/A P0C6V3 41388583
    996909 9irc:A (2.82) BS01 peptide N/A GO:0005290 ... Q8N697 40781080
    996910 9ire:A (3.0) BS01 ZN N/A GO:0000976 ... A0A158RN89 N/A
    996911 9ire:A (3.0) BS02 ZN N/A GO:0000976 ... A0A158RN89 N/A
    996912 9ire:B (3.0) BS01 ZN N/A GO:0000976 ... A0A158RN89 N/A
    996913 9ire:B (3.0) BS02 ZN N/A GO:0000976 ... A0A158RN89 N/A
    996914 9ire:B (3.0) BS03 MG N/A GO:0000976 ... A0A158RN89 N/A
    996915 9irf:A (2.8) BS01 rna N/A N/A Q6D0W7 41475348
    996916 9irf:B (2.8) BS01 rna N/A N/A Q6D0W5 41475348
    996917 9irf:C (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996918 9irf:D (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996919 9irf:E (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996920 9irf:F (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996921 9irf:G (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996922 9irf:H (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996923 9irf:J (2.8) BS01 rna N/A N/A Q6D0W8 41475348
    996924 9irg:A (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996925 9irg:B (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996926 9irg:C (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996927 9irg:D (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996928 9irg:E (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996929 9irg:F (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996930 9irg:G (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996931 9irg:H (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996932 9irg:I (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996933 9irg:J (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996934 9irg:K (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996935 9irg:L (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996936 9irg:N (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996937 9irg:O (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996938 9irg:P (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996939 9irg:Q (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996940 9irg:S (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996941 9irg:T (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996942 9irg:U (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996943 9irg:V (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996944 9irg:W (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996945 9irg:Y (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996946 9irg:Z (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996947 9irg:a (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996948 9irg:b (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996949 9irg:f (4.59) BS01 rna N/A N/A Q6D0W6 41475348
    996950 9iri:A (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996951 9iri:B (2.8) BS01 rna N/A N/A Q6D0W5 41475348
    996952 9iri:C (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996953 9iri:D (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996954 9iri:E (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996955 9iri:F (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996956 9iri:G (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996957 9iri:I (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996958 9iri:J (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996959 9iri:K (2.8) BS01 rna N/A N/A Q6D0W6 41475348
    996960 9irk:A (2.8) BS01 O6E N/A GO:0006355 ... P14713 40404641
    996961 9irk:C (2.8) BS01 O6E N/A GO:0006355 ... P14713 40404641
    996962 9irl:A (2.031) BS01 A1L20 N/A GO:0004672 ... P12931 N/A
    996963 9irm:A (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996964 9irm:A (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996965 9irm:B (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996966 9irm:B (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996967 9irm:C (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996968 9irm:C (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996969 9irm:D (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996970 9irm:D (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996971 9irm:E (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996972 9irm:E (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996973 9irm:F (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996974 9irm:F (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996975 9irm:G (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996976 9irm:G (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996977 9irm:H (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996978 9irm:H (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996979 9irm:I (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996980 9irm:I (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996981 9irm:J (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996982 9irm:J (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996983 9irm:K (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996984 9irm:K (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996985 9irm:L (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996986 9irm:L (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996987 9irm:M (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996988 9irm:M (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996989 9irm:N (1.81) BS01 WBW N/A GO:0004176 ... Q2G036 39615486
    996990 9irm:N (1.81) BS02 WBW N/A GO:0004176 ... Q2G036 39615486
    996991 9irp:A (1.901) BS01 Z53 N/A GO:0004176 ... Q2G036 39615486
    996992 9irp:A (1.901) BS02 MG N/A GO:0004176 ... Q2G036 39615486
    996993 9irp:A (1.901) BS03 Z53 N/A GO:0004176 ... Q2G036 39615486
    996994 9irp:B (1.901) BS01 Z53 N/A GO:0004176 ... Q2G036 39615486
    996995 9irp:B (1.901) BS02 Z53 N/A GO:0004176 ... Q2G036 39615486
    996996 9irp:C (1.901) BS01 Z53 N/A GO:0004176 ... Q2G036 39615486
    996997 9irp:C (1.901) BS02 MG N/A GO:0004176 ... Q2G036 39615486
    996998 9irp:C (1.901) BS03 Z53 N/A GO:0004176 ... Q2G036 39615486
    996999 9irp:D (1.901) BS01 Z53 N/A GO:0004176 ... Q2G036 39615486
    997000 9irp:D (1.901) BS02 Z53 N/A GO:0004176 ... Q2G036 39615486

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).