SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    997601 9iuj:B (2.78) BS01 MG N/A GO:0001525 ... P05106
    Q6MZV7
    N/A
    997602 9iuj:B (2.78) BS02 CA N/A GO:0001525 ... P05106
    Q6MZV7
    N/A
    997603 9iuj:B (2.78) BS03 CA N/A GO:0001525 ... P05106
    Q6MZV7
    N/A
    997604 9iuk:A (3.38) BS01 A1L26 N/A GO:0000166 ... Q5ANA3 39242571
    997605 9iul:A (3.3) BS01 A1L26 N/A GO:0000166 ... Q5ANA3 39242571
    997606 9iul:A (3.3) BS02 TPF N/A GO:0000166 ... Q5ANA3 39242571
    997607 9ium:A (3.08) BS01 A1L26 N/A GO:0000166 ... Q5ANA3 39242571
    997608 9ium:A (3.08) BS02 A1L27 N/A GO:0000166 ... Q5ANA3 39242571
    997609 9iuo:A (2.09) BS01 A1L25 N/A GO:0003824 ... P11586 39591507
    997610 9iuo:A (2.09) BS02 NAP N/A GO:0003824 ... P11586 39591507
    997611 9iuo:B (2.09) BS01 A1L25 N/A GO:0003824 ... P11586 39591507
    997612 9iuo:B (2.09) BS02 NAP N/A GO:0003824 ... P11586 39591507
    997613 9iuo:C (2.09) BS01 A1L25 N/A GO:0003824 ... P11586 39591507
    997614 9iuo:C (2.09) BS02 NAP N/A GO:0003824 ... P11586 39591507
    997615 9iuo:D (2.09) BS01 A1L25 N/A GO:0003824 ... P11586 39591507
    997616 9iuo:D (2.09) BS02 NAP N/A GO:0003824 ... P11586 39591507
    997617 9iut:A (2.09) BS01 peptide N/A GO:0004674 ... N/A 40472844
    997618 9iut:B (2.09) BS01 peptide N/A GO:0004674 ... N/A 40472844
    997619 9iut:D (2.09) BS01 peptide N/A GO:0004674 ... N/A 40472844
    997620 9iut:E (2.09) BS01 peptide N/A GO:0004674 ... N/A 40472844
    997621 9iuu:A (3.29) BS01 ZN N/A GO:0006508 ... Q9BYF1 39616168
    997622 9iuv:A (1.74) BS01 FMN N/A GO:0003959 ... A0A1I0SYV3 N/A
    997623 9iuv:B (1.74) BS01 FMN N/A GO:0003959 ... A0A1I0SYV3 N/A
    997624 9iuv:C (1.74) BS01 FMN N/A GO:0003959 ... A0A1I0SYV3 N/A
    997625 9iuv:D (1.74) BS01 FMN N/A GO:0003959 ... A0A1I0SYV3 N/A
    997626 9iuw:A (1.78) BS01 ZN N/A GO:0000166 ... Q8U4J9 40240361
    997627 9iuw:A (1.78) BS02 ZN N/A GO:0000166 ... Q8U4J9 40240361
    997628 9iux:A (1.53) BS01 HEM N/A GO:0005344 ... Q6B0K9 N/A
    997629 9iuy:A (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997630 9iuy:B (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997631 9iuy:C (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997632 9iuy:D (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997633 9iuy:E (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997634 9iuy:F (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997635 9iuy:G (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997636 9iuy:H (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997637 9iuy:I (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997638 9iuy:J (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997639 9iuy:K (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997640 9iuy:L (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997641 9iuy:M (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997642 9iuy:N (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997643 9iuy:O (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997644 9iuy:P (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997645 9iuy:Q (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997646 9iuy:R (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997647 9iuy:S (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997648 9iuy:T (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997649 9iuy:U (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997650 9iuy:V (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997651 9iuy:W (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997652 9iuy:X (1.51) BS01 MG N/A GO:0004322 ... P09528 N/A
    997653 9iuz:A (3.19) BS01 O6E N/A GO:0006355 ... P14713 39317197
    997654 9iuz:B (3.19) BS01 O6E N/A GO:0006355 ... P14713 39317197
    997655 9iv1:R (2.98) BS01 DHT N/A GO:0004888 ... Q6QNK2 39884271
    997656 9iv2:R (3.53) BS01 DHT N/A GO:0004888 ... Q6QNK2 39884271
    997657 9iv5:A (1.59) BS01 A1D95 N/A N/A O60885 40011026
    997658 9iv8:A (3.5) BS01 CA N/A GO:0005432 ... P32418 40433952
    997659 9iv8:A (3.5) BS02 PIO N/A GO:0005432 ... P32418 40433952
    997660 9iv8:A (3.5) BS03 CA N/A GO:0005432 ... P32418 40433952
    997661 9iv8:A (3.5) BS04 CA N/A GO:0005432 ... P32418 40433952
    997662 9iv8:A (3.5) BS05 CA N/A GO:0005432 ... P32418 40433952
    997663 9iv8:A (3.5) BS06 CA N/A GO:0005432 ... P32418 40433952
    997664 9iv9:A (2.31) BS01 ZN N/A GO:0003968 ... Q997F0 39964914
    997665 9iv9:A (2.31) BS02 ZN N/A GO:0003968 ... Q997F0 39964914
    997666 9iva:A (2.52) BS01 ZN N/A GO:0000166 ... Q997F0 39964914
    997667 9iva:A (2.52) BS02 ZN N/A GO:0000166 ... Q997F0 39964914
    997668 9ivb:A (2.35) BS01 A1L3A N/A GO:0004672 ... P08581 39875456
    997669 9ivb:B (2.35) BS01 A1L3A N/A GO:0004672 ... P08581 39875456
    997670 9ivc:A (3.17) BS01 peptide N/A GO:0005515 ... P36107 40442105
    997671 9ivc:C (3.17) BS01 peptide N/A GO:0005515 ... P36107 40442105
    997672 9ivd:B (3.55) BS01 peptide N/A N/A Q9C0C7 40408472
    997673 9ive:A (1.93) BS01 ALA N/A GO:0003824 ... V5X927 39667461
    997674 9ive:B (1.93) BS01 ALA N/A GO:0003824 ... V5X927 39667461
    997675 9ive:C (1.93) BS01 ALA N/A GO:0003824 ... V5X927 39667461
    997676 9ive:D (1.93) BS01 ALA N/A GO:0003824 ... V5X927 39667461
    997677 9ivf:A (2.8) BS01 dna N/A GO:0000166 ... A0A2X0TKI6 N/A
    997678 9ivf:A (2.8) BS02 ANP N/A GO:0000166 ... A0A2X0TKI6 N/A
    997679 9ivf:B (2.8) BS01 dna N/A GO:0000166 ... A0A2X0TKI6 N/A
    997680 9ivf:B (2.8) BS02 ANP N/A GO:0000166 ... A0A2X0TKI6 N/A
    997681 9ivf:C (2.8) BS01 dna N/A GO:0000166 ... A0A2X0TKI6 N/A
    997682 9ivf:C (2.8) BS02 ANP N/A GO:0000166 ... A0A2X0TKI6 N/A
    997683 9ivf:C (2.8) BS03 ANP N/A GO:0000166 ... A0A2X0TKI6 N/A
    997684 9ivf:D (2.8) BS01 dna N/A GO:0000166 ... A0A2X0TKI6 N/A
    997685 9ivf:D (2.8) BS02 ANP N/A GO:0000166 ... A0A2X0TKI6 N/A
    997686 9ivf:D (2.8) BS03 ANP N/A GO:0000166 ... A0A2X0TKI6 N/A
    997687 9ivf:E (2.8) BS01 dna N/A GO:0000166 ... A0A2X0TKI6 N/A
    997688 9ivf:E (2.8) BS02 ANP N/A GO:0000166 ... A0A2X0TKI6 N/A
    997689 9ivf:F (2.8) BS01 ANP N/A GO:0000166 ... A0A2X0TKI6 N/A
    997690 9ivg:R (3.0) BS01 peptide N/A GO:0004888 ... P43220 39664415
    997691 9ivh:A (2.02) BS01 G4O N/A GO:0003824 ... A0A378TKC7 N/A
    997692 9ivh:B (2.02) BS01 G4O N/A GO:0003824 ... A0A378TKC7 N/A
    997693 9ivh:D (2.02) BS01 G4O N/A GO:0003824 ... A0A378TKC7 N/A
    997694 9ivk:A (2.74) BS01 KY6 N/A GO:0005506 ... P0ABE7 39972138
    997695 9ivl:A (1.4) BS01 BMG N/A GO:0008800 ... P52682 N/A
    997696 9ivm:R (3.22) BS01 peptide N/A GO:0004888 ... P43220 39664415
    997697 9ivm:R (3.22) BS02 A1EEC N/A GO:0004888 ... P43220 39664415
    997698 9ivn:A (2.0) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997699 9ivn:B (2.0) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997700 9ivn:C (2.0) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997701 9ivn:D (2.0) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997702 9ivn:E (2.0) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997703 9ivn:F (2.0) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997704 9ivn:G (2.0) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997705 9ivn:H (2.0) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997706 9ivo:A (1.78) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997707 9ivo:B (1.78) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997708 9ivo:C (1.78) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997709 9ivo:D (1.78) BS01 NAD N/A GO:0003824 ... A4XEP2 N/A
    997710 9ivv:A (2.961) BS01 ZN N/A GO:0005515 ... Q16769 40050649
    997711 9ivv:A (2.961) BS02 A1D94 N/A GO:0005515 ... Q16769 40050649
    997712 9ivy:A (2.33) BS01 ZN N/A GO:0000105 ... Q9HVW9 40729526
    997713 9ivy:B (2.33) BS01 NAI N/A GO:0000105 ... Q9HVW9 40729526
    997714 9ivy:B (2.33) BS02 ZN N/A GO:0000105 ... Q9HVW9 40729526
    997715 9ivy:B (2.33) BS03 ZN N/A GO:0000105 ... Q9HVW9 40729526
    997716 9ivz:A (2.29) BS01 GAL N/A GO:0004553 ... A0A7H4P971 40846838
    997717 9ivz:A (2.29) BS02 GLC N/A GO:0004553 ... A0A7H4P971 40846838
    997718 9ivz:A (2.29) BS03 A1EAX N/A GO:0004553 ... A0A7H4P971 40846838
    997719 9iw1:A (2.11) BS01 NMN N/A GO:0000309 ... G0S929 40516445
    997720 9iw1:B (2.11) BS01 NMN N/A GO:0000309 ... G0S929 40516445
    997721 9iw3:A (3.58) BS01 dna N/A N/A N/A 39448873
    997722 9iw3:A (3.58) BS02 dna N/A N/A N/A 39448873
    997723 9iw3:A (3.58) BS03 dna N/A N/A N/A 39448873
    997724 9iwb:A (1.95) BS01 A1D98 N/A GO:0003723 ... P00359 N/A
    997725 9iwc:A (1.96) BS01 A1D98 N/A GO:0003723 ... P00359 N/A
    997726 9iwd:A (2.07) BS01 A1EA6 N/A GO:0003723 ... P00359 N/A
    997727 9iwj:A (2.48) BS01 peptide N/A GO:0003677 ... Q07869 40298866
    997728 9iwj:B (2.48) BS01 peptide N/A GO:0003677 ... Q07869 40298866
    997729 9iwj:C (2.48) BS01 peptide N/A GO:0003677 ... Q07869 40298866
    997730 9iwj:C (2.48) BS02 peptide N/A GO:0003677 ... Q07869 40298866
    997731 9iwj:D (2.48) BS01 peptide N/A GO:0003677 ... Q07869 40298866
    997732 9iwk:A (2.43) BS01 peptide N/A GO:0003677 ... P37231 40298866
    997733 9iwk:C (2.43) BS01 peptide N/A GO:0003677 ... P37231 40298866
    997734 9iwl:A (2.09) BS01 peptide N/A GO:0003677 ... Q07869 40298866
    997735 9iwm:A (1.39) BS01 peptide N/A GO:0003677 ... Q07869 40298866
    997736 9iwm:A (1.39) BS02 2VN N/A GO:0003677 ... Q07869 40298866
    997737 9iwn:A (1.59) BS01 peptide N/A GO:0003677 ... Q07869 40298866
    997738 9iwo:A (1.49) BS01 peptide N/A GO:0003677 ... Q07869 40298866
    997739 9iwo:A (1.49) BS02 2VN N/A GO:0003677 ... Q07869 40298866
    997740 9iws:A (2.86) BS01 I7P N/A GO:0000822 ... Q9UBH6 39325866
    997741 9iws:A (2.86) BS02 I7P N/A GO:0000822 ... Q9UBH6 39325866
    997742 9iws:B (2.86) BS01 I7P N/A GO:0000822 ... Q9UBH6 39325866
    997743 9iws:B (2.86) BS02 I7P N/A GO:0000822 ... Q9UBH6 39325866
    997744 9iwt:A (2.02) BS01 AMP N/A GO:0005125 ... P43490 N/A
    997745 9iwt:A (2.02) BS02 AMP N/A GO:0005125 ... P43490 N/A
    997746 9iwt:B (2.02) BS01 AMP N/A GO:0005125 ... P43490 N/A
    997747 9iwt:B (2.02) BS02 AMP N/A GO:0005125 ... P43490 N/A
    997748 9iwt:C (2.02) BS01 AMP N/A GO:0005125 ... P43490 N/A
    997749 9iwt:D (2.02) BS01 AMP N/A GO:0005125 ... P43490 N/A
    997750 9iwt:D (2.02) BS02 AMP N/A GO:0005125 ... P43490 N/A
    997751 9iwu:A (2.2) BS01 A1EAB N/A GO:0016491 ... A0A977K7H6 N/A
    997752 9iwu:C (2.2) BS01 A1EAB N/A GO:0016491 ... A0A977K7H6 N/A
    997753 9iwu:E (2.2) BS01 A1EAB N/A GO:0016491 ... A0A977K7H6 N/A
    997754 9iwu:F (2.2) BS01 A1EAB N/A GO:0016491 ... A0A977K7H6 N/A
    997755 9iwu:G (2.2) BS01 A1EAB N/A GO:0016491 ... A0A977K7H6 N/A
    997756 9iwu:H (2.2) BS01 A1EAB N/A GO:0016491 ... A0A977K7H6 N/A
    997757 9iwv:A (1.85) BS01 FAD N/A GO:0071949 ... B5M9L6 40203940
    997758 9iwv:B (1.85) BS01 FAD N/A GO:0071949 ... B5M9L6 40203940
    997759 9iww:A (1.93) BS01 A1D96 N/A GO:0004672 ... Q9QZL0 40341069
    997760 9iww:B (1.93) BS01 A1D96 N/A GO:0004672 ... Q9QZL0 40341069
    997761 9iwx:A (1.99) BS01 A1D96 N/A GO:0004672 ... Q9QZL0 40341069
    997762 9iwx:B (1.99) BS01 A1D96 N/A GO:0004672 ... Q9QZL0 40341069
    997763 9iwy:A (2.52) BS01 A1D97 N/A GO:0004672 ... Q9QZL0 40341069
    997764 9iwy:B (2.52) BS01 A1D97 N/A GO:0004672 ... Q9QZL0 40341069
    997765 9iwz:A (1.82) BS01 ZOV N/A GO:0004672 ... Q9QZL0 40341069
    997766 9iwz:B (1.82) BS01 ZOV N/A GO:0004672 ... Q9QZL0 40341069
    997767 9ix0:A (2.1) BS01 A1D99 N/A GO:0004672 ... Q9QZL0 40341069
    997768 9ix0:B (2.1) BS01 A1D99 N/A GO:0004672 ... Q9QZL0 40341069
    997769 9ix1:A (2.31) BS01 PP2 N/A GO:0004672 ... Q9QZL0 40341069
    997770 9ix1:B (2.31) BS01 PP2 N/A GO:0004672 ... Q9QZL0 40341069
    997771 9ix2:A (2.39) BS01 1SU N/A GO:0004672 ... Q9QZL0 40341069
    997772 9ix3:A (2.07) BS01 A1EAA N/A GO:0004672 ... Q9QZL0 40341069
    997773 9ix3:B (2.07) BS01 A1EAA N/A GO:0004672 ... Q9QZL0 40341069
    997774 9ix4:A (2.96) BS01 dna N/A N/A A0A5R8LS59 39448873
    997775 9ix4:A (2.96) BS02 dna N/A N/A A0A5R8LS59 39448873
    997776 9ix4:A (2.96) BS03 ADP N/A N/A A0A5R8LS59 39448873
    997777 9ix4:B (2.96) BS01 dna N/A N/A A0A5R8LS59 39448873
    997778 9ix4:B (2.96) BS02 dna N/A N/A A0A5R8LS59 39448873
    997779 9ix4:B (2.96) BS03 ADP N/A N/A A0A5R8LS59 39448873
    997780 9ix5:A (2.65) BS01 peptide N/A GO:0003677 ... P10828 40539969
    997781 9ix5:A (2.65) BS02 A1EAC N/A GO:0003677 ... P10828 40539969
    997782 9ix6:A (3.2) BS01 peptide N/A N/A N/A N/A
    997783 9ix6:A (3.2) BS02 rna N/A N/A N/A N/A
    997784 9ix9:A (2.05) BS01 CU N/A GO:0005507 ... A0AAJ6N646 N/A
    997785 9ix9:A (2.05) BS02 CU N/A GO:0005507 ... A0AAJ6N646 N/A
    997786 9ix9:A (2.05) BS03 OXY N/A GO:0005507 ... A0AAJ6N646 N/A
    997787 9ix9:A (2.05) BS04 CU N/A GO:0005507 ... A0AAJ6N646 N/A
    997788 9ix9:A (2.05) BS05 OXY N/A GO:0005507 ... A0AAJ6N646 N/A
    997789 9ix9:B (2.05) BS01 CU N/A GO:0005507 ... A0AAJ6N646 N/A
    997790 9ix9:B (2.05) BS02 CU N/A GO:0005507 ... A0AAJ6N646 N/A
    997791 9ix9:B (2.05) BS03 OXY N/A GO:0005507 ... A0AAJ6N646 N/A
    997792 9ix9:B (2.05) BS04 CU N/A GO:0005507 ... A0AAJ6N646 N/A
    997793 9ix9:B (2.05) BS05 OXY N/A GO:0005507 ... A0AAJ6N646 N/A
    997794 9ix9:C (2.05) BS01 OXY N/A GO:0005507 ... A0AAJ6N646 N/A
    997795 9ix9:C (2.05) BS02 CU N/A GO:0005507 ... A0AAJ6N646 N/A
    997796 9ix9:C (2.05) BS03 CU N/A GO:0005507 ... A0AAJ6N646 N/A
    997797 9ix9:C (2.05) BS04 CU N/A GO:0005507 ... A0AAJ6N646 N/A
    997798 9ix9:C (2.05) BS05 OXY N/A GO:0005507 ... A0AAJ6N646 N/A
    997799 9ix9:D (2.05) BS01 CU N/A GO:0005507 ... A0AAJ6N646 N/A
    997800 9ix9:D (2.05) BS02 CU N/A GO:0005507 ... A0AAJ6N646 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).