SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    998201 9j0p:E (3.3) BS01 dna N/A GO:0003677 ... I3LSI7 40043114
    998202 9j0p:I (3.3) BS01 ZN N/A GO:0001193 ... P60899 40043114
    998203 9j0p:I (3.3) BS02 ZN N/A GO:0001193 ... P60899 40043114
    998204 9j0p:J (3.3) BS01 ZN N/A GO:0003677 ... A0A8W4F9W9 40043114
    998205 9j0p:L (3.3) BS01 ZN N/A GO:0001650 ... A0A4X1TRS6 40043114
    998206 9j0p:Y (3.3) BS01 ZN N/A GO:0000122 ... P63272 40043114
    998207 9j0p:a (3.3) BS01 dna N/A GO:0000776 ... P84243 40043114
    998208 9j0p:a (3.3) BS02 dna N/A GO:0000776 ... P84243 40043114
    998209 9j0p:b (3.3) BS01 dna N/A GO:0000781 ... P62805 40043114
    998210 9j0p:b (3.3) BS02 dna N/A GO:0000781 ... P62805 40043114
    998211 9j0p:c (3.3) BS01 dna N/A GO:0000786 ... P04908 40043114
    998212 9j0p:c (3.3) BS02 dna N/A GO:0000786 ... P04908 40043114
    998213 9j0p:d (3.3) BS01 dna N/A GO:0000786 ... P06899 40043114
    998214 9j0p:d (3.3) BS02 dna N/A GO:0000786 ... P06899 40043114
    998215 9j0p:e (3.3) BS01 dna N/A GO:0000776 ... P84243 40043114
    998216 9j0p:e (3.3) BS02 dna N/A GO:0000776 ... P84243 40043114
    998217 9j0p:f (3.3) BS01 dna N/A GO:0000781 ... P62805 40043114
    998218 9j0p:f (3.3) BS02 dna N/A GO:0000781 ... P62805 40043114
    998219 9j0p:g (3.3) BS01 dna N/A GO:0000786 ... P04908 40043114
    998220 9j0p:g (3.3) BS02 dna N/A GO:0000786 ... P04908 40043114
    998221 9j0p:h (3.3) BS01 dna N/A GO:0000786 ... P06899 40043114
    998222 9j0p:h (3.3) BS02 dna N/A GO:0000786 ... P06899 40043114
    998223 9j0s:A (2.88) BS01 NAP N/A GO:0016491 ... Q9HUR4 N/A
    998224 9j0s:B (2.88) BS01 NAP N/A GO:0016491 ... Q9HUR4 N/A
    998225 9j0s:C (2.88) BS01 NAP N/A GO:0016491 ... Q9HUR4 N/A
    998226 9j0s:D (2.88) BS01 NAP N/A GO:0016491 ... Q9HUR4 N/A
    998227 9j0u:A (2.58) BS01 PLP N/A GO:0003824 ... K0NPP0 39766298
    998228 9j0v:A (1.79) BS01 PLP N/A GO:0003824 ... K0NPP0 39766298
    998229 9j0w:A (2.51) BS01 NAP N/A GO:0016491 ... Q9HUR4 N/A
    998230 9j0w:B (2.51) BS01 NAP N/A GO:0016491 ... Q9HUR4 N/A
    998231 9j0w:C (2.51) BS01 NAP N/A GO:0016491 ... Q9HUR4 N/A
    998232 9j0w:D (2.51) BS01 NAP N/A GO:0016491 ... Q9HUR4 N/A
    998233 9j14:A (3.49) BS01 ZEA N/A GO:0000295 ... Q84MA8 40216803
    998234 9j14:B (3.49) BS01 ZEA N/A GO:0000295 ... Q84MA8 40216803
    998235 9j15:A (3.4) BS01 ADE N/A GO:0000295 ... Q84MA8 40216803
    998236 9j15:B (3.4) BS01 ADE N/A GO:0000295 ... Q84MA8 40216803
    998237 9j16:A (3.4) BS01 ADE N/A GO:0000295 ... Q84MA8 40216803
    998238 9j16:B (3.4) BS01 ADE N/A GO:0000295 ... Q84MA8 40216803
    998239 9j17:A (3.4) BS01 ZEA N/A GO:0000295 ... Q84MA8 40216803
    998240 9j17:B (3.4) BS01 ZEA N/A GO:0000295 ... Q84MA8 40216803
    998241 9j18:A (3.5) BS01 ZEA N/A GO:0000295 ... Q84MA8 N/A
    998242 9j18:B (3.5) BS01 ZEA N/A GO:0000295 ... Q84MA8 N/A
    998243 9j19:A (2.7) BS01 MIY N/A GO:0008233 ... P0DTD1 39882595
    998244 9j1a:A (1.48) BS01 MN N/A GO:0030246 ... P02866 N/A
    998245 9j1a:A (1.48) BS02 CA N/A GO:0030246 ... P02866 N/A
    998246 9j1b:A (2.48) BS01 MN N/A GO:0030246 ... P02866 N/A
    998247 9j1b:A (2.48) BS02 CA N/A GO:0030246 ... P02866 N/A
    998248 9j1b:B (2.48) BS01 A1EAT N/A GO:0030246 ... P02866 N/A
    998249 9j1b:B (2.48) BS02 MN N/A GO:0030246 ... P02866 N/A
    998250 9j1b:B (2.48) BS03 CA N/A GO:0030246 ... P02866 N/A
    998251 9j1c:A (2.43) BS01 MN N/A GO:0030246 ... P02866 N/A
    998252 9j1c:A (2.43) BS02 CA N/A GO:0030246 ... P02866 N/A
    998253 9j1c:B (2.43) BS01 A1EAU N/A GO:0030246 ... P02866 N/A
    998254 9j1c:B (2.43) BS02 MN N/A GO:0030246 ... P02866 N/A
    998255 9j1c:B (2.43) BS03 CA N/A GO:0030246 ... P02866 N/A
    998256 9j1c:C (2.43) BS01 A1EAU N/A GO:0030246 ... P02866 N/A
    998257 9j1c:C (2.43) BS02 MN N/A GO:0030246 ... P02866 N/A
    998258 9j1c:C (2.43) BS03 CA N/A GO:0030246 ... P02866 N/A
    998259 9j1c:D (2.43) BS01 MN N/A GO:0030246 ... P02866 N/A
    998260 9j1c:D (2.43) BS02 CA N/A GO:0030246 ... P02866 N/A
    998261 9j1d:A (3.49) BS01 A1EAW N/A GO:0030246 ... P02866 N/A
    998262 9j1d:A (3.49) BS02 CA N/A GO:0030246 ... P02866 N/A
    998263 9j1d:A (3.49) BS03 MN N/A GO:0030246 ... P02866 N/A
    998264 9j1d:B (3.49) BS01 CA N/A GO:0030246 ... P02866 N/A
    998265 9j1d:B (3.49) BS02 MN N/A GO:0030246 ... P02866 N/A
    998266 9j1f:A (2.17) BS01 MN N/A GO:0030246 ... P02866 N/A
    998267 9j1f:A (2.17) BS02 CA N/A GO:0030246 ... P02866 N/A
    998268 9j1f:B (2.17) BS01 A1EAW N/A GO:0030246 ... P02866 N/A
    998269 9j1f:B (2.17) BS02 MN N/A GO:0030246 ... P02866 N/A
    998270 9j1f:B (2.17) BS03 CA N/A GO:0030246 ... P02866 N/A
    998271 9j1f:C (2.17) BS01 A1EAW N/A GO:0030246 ... P02866 N/A
    998272 9j1f:C (2.17) BS02 MN N/A GO:0030246 ... P02866 N/A
    998273 9j1f:C (2.17) BS03 CA N/A GO:0030246 ... P02866 N/A
    998274 9j1f:D (2.17) BS01 MN N/A GO:0030246 ... P02866 N/A
    998275 9j1f:D (2.17) BS02 CA N/A GO:0030246 ... P02866 N/A
    998276 9j1g:A (1.5) BS01 PHT N/A GO:0003824 ... G8TV28 39642872
    998277 9j1g:A (1.5) BS02 PHT N/A GO:0003824 ... G8TV28 39642872
    998278 9j1h:A (2.0) BS01 CO N/A GO:0051213 ... Q4WAW9 39669701
    998279 9j1h:A (2.0) BS02 AKG N/A GO:0051213 ... Q4WAW9 39669701
    998280 9j1h:B (2.0) BS01 CO N/A GO:0051213 ... Q4WAW9 39669701
    998281 9j1h:B (2.0) BS02 AKG N/A GO:0051213 ... Q4WAW9 39669701
    998282 9j1i:A (2.11) BS01 FE2 N/A GO:0051213 ... Q4WAW9 39669701
    998283 9j1i:A (2.11) BS02 CO N/A GO:0051213 ... Q4WAW9 39669701
    998284 9j1i:B (2.11) BS01 FE2 N/A GO:0051213 ... Q4WAW9 39669701
    998285 9j1k:J (2.88) BS01 peptide N/A N/A A0A239T408 39956822
    998286 9j1k:J (2.88) BS02 peptide N/A N/A A0A239T408 39956822
    998287 9j1k:O (2.88) BS01 peptide N/A N/A A0A239T408 39956822
    998288 9j1k:O (2.88) BS02 peptide N/A N/A A0A239T408 39956822
    998289 9j1k:i (2.88) BS01 peptide N/A N/A A0A239T408 39956822
    998290 9j1k:i (2.88) BS02 peptide N/A N/A A0A239T408 39956822
    998291 9j1l:3 (3.28) BS01 FE N/A N/A A0A3T2E047 39956822
    998292 9j1l:3 (3.28) BS02 FE N/A N/A A0A3T2E047 39956822
    998293 9j1l:O (3.28) BS01 FE N/A N/A A0A3T2E047 39956822
    998294 9j1l:O (3.28) BS02 FE N/A N/A A0A3T2E047 39956822
    998295 9j1l:o (3.28) BS01 FE N/A N/A A0A3T2E047 39956822
    998296 9j1l:o (3.28) BS02 FE N/A N/A A0A3T2E047 39956822
    998297 9j1m:0 (2.33) BS01 rna N/A GO:0003735 ... P0A5V9 40043128
    998298 9j1m:1 (2.33) BS01 rna N/A GO:0003735 ... P0A5W3 40043128
    998299 9j1m:1 (2.33) BS02 ZN N/A GO:0003735 ... P0A5W3 40043128
    998300 9j1m:2 (2.33) BS01 rna N/A GO:0003735 ... P0A5W5 40043128
    998301 9j1m:3 (2.33) BS01 rna N/A GO:0003735 ... P66272 40043128
    998302 9j1m:4 (2.33) BS01 rna N/A GO:0003735 ... P0A5W7 40043128
    998303 9j1m:4 (2.33) BS02 ZN N/A GO:0003735 ... P0A5W7 40043128
    998304 9j1m:C (2.33) BS01 rna N/A GO:0002181 ... O06047 40043128
    998305 9j1m:C (2.33) BS02 MG N/A GO:0002181 ... O06047 40043128
    998306 9j1m:D (2.33) BS01 rna N/A GO:0003735 ... P60441 40043128
    998307 9j1m:E (2.33) BS01 rna N/A GO:0003735 ... P60728 40043128
    998308 9j1m:F (2.33) BS01 rna N/A GO:0000049 ... P62402 40043128
    998309 9j1m:F (2.33) BS02 rna N/A GO:0000049 ... P62402 40043128
    998310 9j1m:G (2.33) BS01 rna N/A GO:0002181 ... P66312 40043128
    998311 9j1m:H (2.33) BS01 rna N/A GO:0003735 ... P66316 40043128
    998312 9j1m:J (2.33) BS01 rna N/A GO:0003729 ... P66066 40043128
    998313 9j1m:K (2.33) BS01 rna N/A GO:0003735 ... P66070 40043128
    998314 9j1m:K (2.33) BS02 rna N/A GO:0003735 ... P66070 40043128
    998315 9j1m:L (2.33) BS01 rna N/A GO:0003735 ... Q7U1E9 40043128
    998316 9j1m:M (2.33) BS01 rna N/A GO:0003735 ... O06049 40043128
    998317 9j1m:N (2.33) BS01 rna N/A GO:0003735 ... P0A5V5 40043128
    998318 9j1m:O (2.33) BS01 rna N/A GO:0003735 ... P66077 40043128
    998319 9j1m:O (2.33) BS02 rna N/A GO:0003735 ... P66077 40043128
    998320 9j1m:P (2.33) BS01 rna N/A GO:0003735 ... P66081 40043128
    998321 9j1m:P (2.33) BS02 rna N/A GO:0003735 ... P66081 40043128
    998322 9j1m:Q (2.33) BS01 rna N/A GO:0000027 ... P66106 40043128
    998323 9j1m:R (2.33) BS01 rna N/A GO:0003723 ... P66118 40043128
    998324 9j1m:S (2.33) BS01 rna N/A GO:0003735 ... P61180 40043128
    998325 9j1m:T (2.33) BS01 rna N/A GO:0003735 ... O06046 40043128
    998326 9j1m:U (2.33) BS01 rna N/A GO:0003723 ... P60628 40043128
    998327 9j1m:V (2.33) BS01 rna N/A GO:0003723 ... P66122 40043128
    998328 9j1m:V (2.33) BS02 rna N/A GO:0003723 ... P66122 40043128
    998329 9j1m:W (2.33) BS01 rna N/A GO:0003735 ... P66128 40043128
    998330 9j1m:W (2.33) BS02 rna N/A GO:0003735 ... P66128 40043128
    998331 9j1m:X (2.33) BS01 rna N/A GO:0003735 ... P0DV54 40043128
    998332 9j1m:X (2.33) BS02 ZN N/A GO:0003735 ... P0DV54 40043128
    998333 9j1m:Y (2.33) BS01 rna N/A GO:0003735 ... O06050 40043128
    998334 9j1m:Z (2.33) BS01 rna N/A GO:0003735 ... P66182 40043128
    998335 9j1m:Z (2.33) BS02 rna N/A GO:0003735 ... P66182 40043128
    998336 9j1m:c (2.33) BS01 rna N/A GO:0003676 ... P0A5X7 40043128
    998337 9j1m:d (2.33) BS01 rna N/A GO:0003723 ... P45811 40043128
    998338 9j1m:e (2.33) BS01 rna N/A GO:0003723 ... P66575 40043128
    998339 9j1m:f (2.33) BS01 rna N/A GO:0003735 ... P66592 40043128
    998340 9j1m:g (2.33) BS01 rna N/A GO:0000049 ... Q53539 40043128
    998341 9j1m:h (2.33) BS01 rna N/A GO:0003735 ... P66626 40043128
    998342 9j1m:i (2.33) BS01 rna N/A GO:0003723 ... P66640 40043128
    998343 9j1m:j (2.33) BS01 rna N/A GO:0000049 ... P0A5X1 40043128
    998344 9j1m:k (2.33) BS01 rna N/A GO:0003735 ... P45812 40043128
    998345 9j1m:l (2.33) BS01 rna N/A GO:0000049 ... Q53538 40043128
    998346 9j1m:m (2.33) BS01 rna N/A GO:0000049 ... P45813 40043128
    998347 9j1m:n (2.33) BS01 rna N/A GO:0003735 ... P0A5X3 40043128
    998348 9j1m:n (2.33) BS02 ZN N/A GO:0003735 ... P0A5X3 40043128
    998349 9j1m:o (2.33) BS01 rna N/A GO:0003735 ... P66430 40043128
    998350 9j1m:o (2.33) BS02 rna N/A GO:0003735 ... P66430 40043128
    998351 9j1m:p (2.33) BS01 rna N/A GO:0003735 ... P66436 40043128
    998352 9j1m:q (2.33) BS01 rna N/A GO:0003735 ... O06051 40043128
    998353 9j1m:r (2.33) BS01 rna N/A GO:0003735 ... P69231 40043128
    998354 9j1m:r (2.33) BS02 ZN N/A GO:0003735 ... P69231 40043128
    998355 9j1m:s (2.33) BS01 rna N/A GO:0000028 ... P0A5X5 40043128
    998356 9j1m:t (2.33) BS01 rna N/A GO:0003723 ... P66506 40043128
    998357 9j1m:x (2.33) BS01 rna N/A N/A N/A 40043128
    998358 9j1m:x (2.33) BS02 rna N/A N/A N/A 40043128
    998359 9j1n:C (2.24) BS01 dna N/A GO:0003700 ... O35906 39892964
    998360 9j1n:C (2.24) BS02 dna N/A GO:0003700 ... O35906 39892964
    998361 9j1o:C (2.23) BS01 dna N/A GO:0003700 ... O35906 39892964
    998362 9j1o:C (2.23) BS02 dna N/A GO:0003700 ... O35906 39892964
    998363 9j1q:A (1.34) BS01 MG N/A GO:0004601 ... B9W4V6 N/A
    998364 9j1q:A (1.34) BS02 HEM N/A GO:0004601 ... B9W4V6 N/A
    998365 9j1u:A (2.72) BS01 G1P N/A GO:0004645 ... A0A5B0VBK8 39725037
    998366 9j1u:B (2.72) BS01 GOL N/A GO:0004645 ... A0A5B0VBK8 39725037
    998367 9j1u:B (2.72) BS02 GLC N/A GO:0004645 ... A0A5B0VBK8 39725037
    998368 9j1u:B (2.72) BS03 GOL N/A GO:0004645 ... A0A5B0VBK8 39725037
    998369 9j1u:E (2.72) BS01 G1P N/A GO:0004645 ... A0A5B0VBK8 39725037
    998370 9j1u:E (2.72) BS02 GOL N/A GO:0004645 ... A0A5B0VBK8 39725037
    998371 9j1u:F (2.72) BS01 GLC N/A GO:0004645 ... A0A5B0VBK8 39725037
    998372 9j1u:F (2.72) BS02 GOL N/A GO:0004645 ... A0A5B0VBK8 39725037
    998373 9j1u:F (2.72) BS03 GOL N/A GO:0004645 ... A0A5B0VBK8 39725037
    998374 9j1u:F (2.72) BS04 GOL N/A GO:0004645 ... A0A5B0VBK8 39725037
    998375 9j1v:A (2.0) BS01 R3O N/A GO:0003824 ... G8TV28 39642872
    998376 9j1v:A (2.0) BS02 R3O N/A GO:0003824 ... G8TV28 39642872
    998377 9j1v:A (2.0) BS03 R3O N/A GO:0003824 ... G8TV28 39642872
    998378 9j1x:A (1.39) BS01 MG N/A GO:0004601 ... B9W4V6 N/A
    998379 9j1x:A (1.39) BS02 HEM N/A GO:0004601 ... B9W4V6 N/A
    998380 9j20:A (1.85) BS01 peptide N/A GO:0000122 ... P61964 40302551
    998381 9j20:B (1.85) BS01 peptide N/A GO:0000122 ... P61964 40302551
    998382 9j24:A (2.5) BS01 GLC N/A GO:0004645 ... A0A5B0VBK8 39725037
    998383 9j24:B (2.5) BS01 GLC N/A GO:0004645 ... A0A5B0VBK8 39725037
    998384 9j24:C (2.5) BS01 GLC N/A GO:0004645 ... A0A5B0VBK8 39725037
    998385 9j24:D (2.5) BS01 GLC N/A GO:0004645 ... A0A5B0VBK8 39725037
    998386 9j24:E (2.5) BS01 GLC N/A GO:0004645 ... A0A5B0VBK8 39725037
    998387 9j24:F (2.5) BS01 GLC N/A GO:0004645 ... A0A5B0VBK8 39725037
    998388 9j25:A (2.74) BS01 PO4 N/A GO:0004645 ... A0A5B0VBK8 39725037
    998389 9j25:B (2.74) BS01 PO4 N/A GO:0004645 ... A0A5B0VBK8 39725037
    998390 9j26:A (1.45) BS01 peptide N/A N/A N/A N/A
    998391 9j26:A (1.45) BS02 peptide N/A N/A N/A N/A
    998392 9j26:E (1.45) BS01 peptide N/A N/A N/A N/A
    998393 9j26:F (1.45) BS01 peptide N/A N/A N/A N/A
    998394 9j26:F (1.45) BS02 peptide N/A N/A N/A N/A
    998395 9j26:F (1.45) BS03 peptide N/A N/A N/A N/A
    998396 9j27:A (2.2) BS01 FE2 N/A N/A A0A345XJU6 41028918
    998397 9j27:A (2.2) BS02 ILE N/A N/A A0A345XJU6 41028918
    998398 9j28:A (2.2) BS01 FE2 N/A N/A N/A 41028918
    998399 9j28:A (2.2) BS02 A1EAJ N/A N/A N/A 41028918
    998400 9j28:B (2.2) BS01 FE2 N/A N/A N/A 41028918

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).