SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    998801 9j5o:A (3.04) BS02 ZN N/A GO:0006400 ... O31457 41554887
    998802 9j5p:B (3.18) BS01 rna N/A GO:0001510 ... O31590 40794868
    998803 9j5p:B (3.18) BS02 SFG N/A GO:0001510 ... O31590 40794868
    998804 9j5p:C (3.18) BS01 rna N/A GO:0001510 ... O31590 40794868
    998805 9j5q:A (1.67) BS01 NAP N/A N/A N/A N/A
    998806 9j5r:C (4.3) BS01 MN N/A GO:0000159 ... P67775 N/A
    998807 9j5r:C (4.3) BS02 MN N/A GO:0000159 ... P67775 N/A
    998808 9j5s:A (2.84) BS01 peptide N/A N/A Q13283 40214262
    998809 9j5s:B (2.84) BS01 peptide N/A N/A Q13283 40214262
    998810 9j5t:A (1.43) BS01 NAD N/A N/A N/A N/A
    998811 9j5u:A (2.25) BS01 MAN N/A GO:0016020 ... N/A N/A
    998812 9j5u:A (2.25) BS02 BLA N/A GO:0016020 ... N/A N/A
    998813 9j5u:A (2.25) BS03 EIC N/A GO:0016020 ... N/A N/A
    998814 9j5u:B (2.25) BS01 MAN N/A GO:0016020 ... N/A N/A
    998815 9j5u:B (2.25) BS02 BMA N/A GO:0016020 ... N/A N/A
    998816 9j5u:B (2.25) BS03 MAN N/A GO:0016020 ... N/A N/A
    998817 9j5u:B (2.25) BS04 EIC N/A GO:0016020 ... N/A N/A
    998818 9j5u:B (2.25) BS05 BLA N/A GO:0016020 ... N/A N/A
    998819 9j5u:C (2.25) BS01 MAN N/A GO:0016020 ... N/A N/A
    998820 9j5u:C (2.25) BS02 MAN N/A GO:0016020 ... N/A N/A
    998821 9j5u:C (2.25) BS03 EIC N/A GO:0016020 ... N/A N/A
    998822 9j5u:C (2.25) BS04 BLA N/A GO:0016020 ... N/A N/A
    998823 9j5v:R (2.86) BS01 A1L3Q N/A GO:0001965 ... Q92633 39506093
    998824 9j5w:A (3.2) BS01 R75 N/A GO:0005886 ... Q3ZAV1 40151250
    998825 9j5x:A (3.44) BS01 A1EAP N/A GO:0005886 ... Q3ZAV1 40151250
    998826 9j5z:A (3.5) BS01 A1AIJ N/A GO:0005886 ... Q3ZAV1 40151250
    998827 9j62:A (2.76) BS01 ZN N/A GO:0006508 ... Q9BYF1 N/A
    998828 9j63:E (3.93) BS01 ZN N/A GO:0000082 ... P62877 N/A
    998829 9j63:E (3.93) BS02 ZN N/A GO:0000082 ... P62877 N/A
    998830 9j63:E (3.93) BS03 ZN N/A GO:0000082 ... P62877 N/A
    998831 9j63:H (3.93) BS01 ZN N/A GO:0000082 ... P62877 N/A
    998832 9j63:H (3.93) BS02 ZN N/A GO:0000082 ... P62877 N/A
    998833 9j64:E (4.28) BS01 ZN N/A GO:0000082 ... P62877 N/A
    998834 9j64:E (4.28) BS02 ZN N/A GO:0000082 ... P62877 N/A
    998835 9j64:E (4.28) BS03 ZN N/A GO:0000082 ... P62877 N/A
    998836 9j64:H (4.28) BS01 ZN N/A GO:0000082 ... P62877 N/A
    998837 9j64:H (4.28) BS02 ZN N/A GO:0000082 ... P62877 N/A
    998838 9j64:H (4.28) BS03 ZN N/A GO:0000082 ... P62877 N/A
    998839 9j64:I (4.28) BS01 peptide N/A GO:0000151 ... Q9UK73 N/A
    998840 9j64:I (4.28) BS02 ZN N/A GO:0000151 ... Q9UK73 N/A
    998841 9j6e:A (2.15) BS01 COA N/A GO:0004315 ... Q7CTU0 41183203
    998842 9j6e:B (2.15) BS01 COA N/A GO:0004315 ... Q7CTU0 41183203
    998843 9j6e:C (2.15) BS01 COA N/A GO:0004315 ... Q7CTU0 41183203
    998844 9j6e:D (2.15) BS01 COA N/A GO:0004315 ... Q7CTU0 41183203
    998845 9j6g:A (2.8) BS01 BMA N/A GO:0016020 ... N/A N/A
    998846 9j6g:B (2.8) BS01 MAN N/A GO:0016020 ... N/A N/A
    998847 9j6g:C (2.8) BS01 BMA N/A GO:0016020 ... N/A N/A
    998848 9j6g:C (2.8) BS02 BMA N/A GO:0016020 ... N/A N/A
    998849 9j6h:A6 (2.92) BS01 ZMP N/A N/A F1SJP6 41214295
    998850 9j6h:A9 (2.92) BS01 NDP N/A GO:0005759 ... F1SL07 41214295
    998851 9j6h:AK (2.92) BS01 ADP N/A GO:0005759 ... F1SIS9 41214295
    998852 9j6h:AL (2.92) BS01 PLX N/A GO:0005743 ... I3LGM4 41214295
    998853 9j6h:AM (2.92) BS01 PLX N/A GO:0005743 ... F1SQP4 41214295
    998854 9j6h:B5 (2.92) BS01 PLX N/A N/A F1SGC6 41214295
    998855 9j6h:B9 (2.92) BS01 ZMP N/A N/A K7GSE5 41214295
    998856 9j6h:BL (2.92) BS01 PLX N/A N/A A0A8D1EYI7 41214295
    998857 9j6h:CB (2.92) BS01 PLX N/A GO:0005737 ... A0A480JRW3 41214295
    998858 9j6h:N1 (2.92) BS01 U10 N/A GO:0003954 ... O79874 41214295
    998859 9j6h:N2 (2.92) BS01 PLX N/A GO:0005743 ... O79875 41214295
    998860 9j6h:N3 (2.92) BS01 PLX N/A GO:0005743 ... O79880 41214295
    998861 9j6h:N4 (2.92) BS01 PLX N/A GO:0008137 ... Q7IIB7 41214295
    998862 9j6h:N4 (2.92) BS02 PLX N/A GO:0008137 ... Q7IIB7 41214295
    998863 9j6h:N4 (2.92) BS03 PLX N/A GO:0008137 ... Q7IIB7 41214295
    998864 9j6h:N6 (2.92) BS01 PLX N/A GO:0005739 ... O79882 41214295
    998865 9j6h:S1 (2.92) BS01 SF4 N/A GO:0005743 ... A0A4X1V1H9 41214295
    998866 9j6h:S1 (2.92) BS02 SF4 N/A GO:0005743 ... A0A4X1V1H9 41214295
    998867 9j6h:S1 (2.92) BS03 FES N/A GO:0005743 ... A0A4X1V1H9 41214295
    998868 9j6h:S1 (2.92) BS04 MG N/A GO:0005743 ... A0A4X1V1H9 41214295
    998869 9j6h:S2 (2.92) BS01 U10 N/A GO:0003954 ... F1S1A8 41214295
    998870 9j6h:S2 (2.92) BS02 MF8 N/A GO:0003954 ... F1S1A8 41214295
    998871 9j6h:S2 (2.92) BS03 SF4 N/A GO:0003954 ... F1S1A8 41214295
    998872 9j6h:S6 (2.92) BS01 ZN N/A N/A F1S031 41214295
    998873 9j6h:S7 (2.92) BS01 U10 N/A N/A A0A8D1TL60 41214295
    998874 9j6h:S7 (2.92) BS02 SF4 N/A N/A A0A8D1TL60 41214295
    998875 9j6h:S7 (2.92) BS03 PLX N/A N/A A0A8D1TL60 41214295
    998876 9j6h:S8 (2.92) BS01 SF4 N/A N/A A0A287BDC0 41214295
    998877 9j6h:S8 (2.92) BS02 SF4 N/A N/A A0A287BDC0 41214295
    998878 9j6h:V1 (2.92) BS01 SF4 N/A GO:0005743 ... A0A4X1SZP7 41214295
    998879 9j6h:V1 (2.92) BS02 FMN N/A GO:0005743 ... A0A4X1SZP7 41214295
    998880 9j6h:V2 (2.92) BS01 FES N/A N/A A0A287BG40 41214295
    998881 9j6i:B (2.3) BS01 H9X N/A N/A Q8VZS8 39277642
    998882 9j6k:A (2.68) BS01 peptide N/A GO:0000781 ... Q16531 40512786
    998883 9j6m:A (1.8) BS01 MG N/A GO:0004553 ... A0ACD6B9D6 39543437
    998884 9j6m:B (1.8) BS01 MG N/A GO:0004553 ... A0ACD6B9D6 39543437
    998885 9j6n:A (1.7) BS01 A1L3Z N/A GO:0004553 ... A0ACD6B9D6 39543437
    998886 9j6n:A (1.7) BS02 MG N/A GO:0004553 ... A0ACD6B9D6 39543437
    998887 9j6n:B (1.7) BS01 A1L3Z N/A GO:0004553 ... A0ACD6B9D6 39543437
    998888 9j6n:B (1.7) BS02 MG N/A GO:0004553 ... A0ACD6B9D6 39543437
    998889 9j6o:A (2.67) BS01 A1L3S N/A N/A Q92793 39356741
    998890 9j6r:A (3.2) BS01 A1EA0 N/A GO:0001504 ... Q01959 N/A
    998891 9j6r:A (3.2) BS02 CLR N/A GO:0001504 ... Q01959 N/A
    998892 9j6r:A (3.2) BS03 Y01 N/A GO:0001504 ... Q01959 N/A
    998893 9j6s:A (2.8) BS01 A1EA1 N/A GO:0001504 ... Q01959 N/A
    998894 9j6s:A (2.8) BS02 CLR N/A GO:0001504 ... Q01959 N/A
    998895 9j6s:A (2.8) BS03 Y01 N/A GO:0001504 ... Q01959 N/A
    998896 9j6t:A (3.4) BS01 A1EA2 N/A GO:0001504 ... Q01959 N/A
    998897 9j6u:A (2.9) BS01 A1EA3 N/A GO:0001504 ... Q01959 N/A
    998898 9j6v:A (3.5) BS01 A1EAZ N/A GO:0001504 ... Q01959 N/A
    998899 9j6w:A6 (2.99) BS01 ZMP N/A N/A F1SJP6 41214295
    998900 9j6w:A9 (2.99) BS01 NDP N/A GO:0005759 ... F1SL07 41214295
    998901 9j6w:AK (2.99) BS01 ADP N/A GO:0005759 ... F1SIS9 41214295
    998902 9j6w:AL (2.99) BS01 PLX N/A GO:0005743 ... I3LGM4 41214295
    998903 9j6w:AM (2.99) BS01 PLX N/A GO:0005743 ... F1SQP4 41214295
    998904 9j6w:B5 (2.99) BS01 PLX N/A N/A F1SGC6 41214295
    998905 9j6w:B9 (2.99) BS01 ZMP N/A N/A K7GSE5 41214295
    998906 9j6w:BL (2.99) BS01 PLX N/A N/A A0A8D1EYI7 41214295
    998907 9j6w:CB (2.99) BS01 PLX N/A GO:0005737 ... A0A480JRW3 41214295
    998908 9j6w:N1 (2.99) BS01 PLX N/A GO:0003954 ... O79874 41214295
    998909 9j6w:N1 (2.99) BS02 U10 N/A GO:0003954 ... O79874 41214295
    998910 9j6w:N2 (2.99) BS01 PLX N/A GO:0005743 ... O79875 41214295
    998911 9j6w:N4 (2.99) BS01 PLX N/A GO:0008137 ... Q7IIB7 41214295
    998912 9j6w:N4 (2.99) BS02 PLX N/A GO:0008137 ... Q7IIB7 41214295
    998913 9j6w:N6 (2.99) BS01 PLX N/A GO:0005739 ... O79882 41214295
    998914 9j6w:S1 (2.99) BS01 SF4 N/A GO:0005743 ... A0A4X1V1H9 41214295
    998915 9j6w:S1 (2.99) BS02 SF4 N/A GO:0005743 ... A0A4X1V1H9 41214295
    998916 9j6w:S1 (2.99) BS03 FES N/A GO:0005743 ... A0A4X1V1H9 41214295
    998917 9j6w:S1 (2.99) BS04 MG N/A GO:0005743 ... A0A4X1V1H9 41214295
    998918 9j6w:S2 (2.99) BS01 U10 N/A GO:0003954 ... F1S1A8 41214295
    998919 9j6w:S2 (2.99) BS02 SF4 N/A GO:0003954 ... F1S1A8 41214295
    998920 9j6w:S5 (2.99) BS01 PLX N/A GO:0005739 ... F1SV23 41214295
    998921 9j6w:S6 (2.99) BS01 ZN N/A N/A F1S031 41214295
    998922 9j6w:S7 (2.99) BS01 U10 N/A N/A A0A8D1TL60 41214295
    998923 9j6w:S7 (2.99) BS02 SF4 N/A N/A A0A8D1TL60 41214295
    998924 9j6w:S7 (2.99) BS03 PLX N/A N/A A0A8D1TL60 41214295
    998925 9j6w:S8 (2.99) BS01 SF4 N/A N/A A0A287BDC0 41214295
    998926 9j6w:S8 (2.99) BS02 SF4 N/A N/A A0A287BDC0 41214295
    998927 9j6w:V1 (2.99) BS01 SF4 N/A GO:0005743 ... A0A4X1SZP7 41214295
    998928 9j6w:V1 (2.99) BS02 FMN N/A GO:0005743 ... A0A4X1SZP7 41214295
    998929 9j6w:V2 (2.99) BS01 FES N/A N/A A0A287BG40 41214295
    998930 9j71:A (2.993) BS01 GFD N/A N/A Q14145 40893683
    998931 9j71:B (2.993) BS01 A1EMI N/A N/A Q14145 40893683
    998932 9j71:C (2.993) BS01 GFD N/A N/A Q14145 40893683
    998933 9j71:X (2.993) BS01 A1EMI N/A N/A Q14145 40893683
    998934 9j72:A (3.47) BS01 URC N/A GO:0005886 ... Q3ZAV1 40670375
    998935 9j73:A (3.5) BS01 R75 N/A GO:0005886 ... Q3ZAV1 40670375
    998936 9j74:A (3.68) BS01 A1AIL N/A GO:0005886 ... Q3ZAV1 N/A
    998937 9j75:A (3.5) BS01 A1AIJ N/A GO:0005886 ... Q3ZAV1 40670375
    998938 9j76:A (3.51) BS01 A1EAY N/A GO:0005886 ... Q3ZAV1 40670375
    998939 9j77:E (3.56) BS01 ZN N/A GO:0008270 ... P62877 40263465
    998940 9j77:E (3.56) BS02 ZN N/A GO:0008270 ... P62877 40263465
    998941 9j77:E (3.56) BS03 ZN N/A GO:0008270 ... P62877 40263465
    998942 9j77:I (3.56) BS01 ZN N/A GO:0008270 ... P62877 40263465
    998943 9j77:I (3.56) BS02 ZN N/A GO:0008270 ... P62877 40263465
    998944 9j77:I (3.56) BS03 ZN N/A GO:0008270 ... P62877 40263465
    998945 9j78:A (3.88) BS01 peptide N/A GO:0000082 ... Q13617 40263465
    998946 9j78:A (3.88) BS02 peptide N/A GO:0000082 ... Q13617 40263465
    998947 9j78:B (3.88) BS01 peptide N/A GO:0000082 ... Q13617 40263465
    998948 9j78:F (3.88) BS01 peptide N/A GO:0000151 ... Q9UK73 40263465
    998949 9j78:J (3.88) BS01 peptide N/A GO:0000151 ... Q9UK73 40263465
    998950 9j79:A (4.08) BS01 peptide N/A GO:0000151 ... Q9UK73 40263465
    998951 9j79:I (4.08) BS01 ZN N/A GO:0008270 ... P62877 40263465
    998952 9j79:I (4.08) BS02 ZN N/A GO:0008270 ... P62877 40263465
    998953 9j79:I (4.08) BS03 ZN N/A GO:0008270 ... P62877 40263465
    998954 9j79:N (4.08) BS01 ZN N/A GO:0008270 ... P62877 40263465
    998955 9j79:N (4.08) BS02 ZN N/A GO:0008270 ... P62877 40263465
    998956 9j79:N (4.08) BS03 ZN N/A GO:0008270 ... P62877 40263465
    998957 9j79:P (4.08) BS01 peptide N/A GO:0000151 ... Q9UK73 40263465
    998958 9j7a:A (4.13) BS01 peptide N/A GO:0000151 ... Q9UK73 40263465
    998959 9j7a:D (4.13) BS01 peptide N/A GO:0000151 ... Q9UK73 40263465
    998960 9j7b:A (4.12) BS01 peptide N/A GO:0000151 ... Q9UK73 40263465
    998961 9j7b:J (4.12) BS01 peptide N/A GO:0000151 ... Q9UK73 40263465
    998962 9j7b:P (4.12) BS01 peptide N/A GO:0000151 ... Q9UK73 40263465
    998963 9j7c:A (3.0) BS01 Y01 N/A GO:0005886 ... F4KD71 39972035
    998964 9j7c:A (3.0) BS02 URE N/A GO:0005886 ... F4KD71 39972035
    998965 9j7c:B (3.0) BS01 Y01 N/A GO:0005886 ... F4KD71 39972035
    998966 9j7c:B (3.0) BS02 URE N/A GO:0005886 ... F4KD71 39972035
    998967 9j7d:A (2.8) BS01 Y01 N/A GO:0005886 ... F4KD71 39972035
    998968 9j7d:B (2.8) BS01 Y01 N/A GO:0005886 ... F4KD71 39972035
    998969 9j7f:A (2.993) BS01 A1EMN N/A N/A Q14145 40893683
    998970 9j7f:B (2.993) BS01 A1EMN N/A N/A Q14145 40893683
    998971 9j7f:C (2.993) BS01 A1EMN N/A N/A Q14145 40893683
    998972 9j7f:D (2.993) BS01 A1EMN N/A N/A Q14145 40893683
    998973 9j7g:A (2.993) BS01 GFD N/A N/A Q14145 40893683
    998974 9j7g:B (2.993) BS01 A1EMM N/A N/A Q14145 40893683
    998975 9j7g:C (2.993) BS01 GFD N/A N/A Q14145 40893683
    998976 9j7g:X (2.993) BS01 A1EMM N/A N/A Q14145 40893683
    998977 9j7h:A (2.68) BS01 QIC N/A GO:0003849 ... B6XIT1 39566672
    998978 9j7h:A (2.68) BS02 QIC N/A GO:0003849 ... B6XIT1 39566672
    998979 9j7h:B (2.68) BS01 QIC N/A GO:0003849 ... B6XIT1 39566672
    998980 9j7h:B (2.68) BS02 QIC N/A GO:0003849 ... B6XIT1 39566672
    998981 9j7h:C (2.68) BS01 QIC N/A GO:0003849 ... B6XIT1 39566672
    998982 9j7h:C (2.68) BS02 QIC N/A GO:0003849 ... B6XIT1 39566672
    998983 9j7h:D (2.68) BS01 QIC N/A GO:0003849 ... B6XIT1 39566672
    998984 9j7h:D (2.68) BS02 QIC N/A GO:0003849 ... B6XIT1 39566672
    998985 9j7i:A (3.55) BS01 peptide N/A GO:0004930 ... P41180 39890873
    998986 9j7m:A (2.82) BS01 CLR N/A GO:0005283 ... P31641 40108165
    998987 9j7m:A (2.82) BS02 CLR N/A GO:0005283 ... P31641 40108165
    998988 9j7m:A (2.82) BS03 Y01 N/A GO:0005283 ... P31641 40108165
    998989 9j7n:A (3.14) BS01 BAL N/A GO:0005283 ... P31641 40108165
    998990 9j7n:A (3.14) BS02 CLR N/A GO:0005283 ... P31641 40108165
    998991 9j7n:A (3.14) BS03 CLR N/A GO:0005283 ... P31641 40108165
    998992 9j7o:A (2.77) BS01 CLR N/A GO:0005283 ... P31641 40108165
    998993 9j7r:A (2.5) BS01 PGU N/A GO:0003824 ... Q2G0V3 N/A
    998994 9j7r:B (2.5) BS01 PGU N/A GO:0003824 ... Q2G0V3 N/A
    998995 9j7s:A (2.5) BS01 PHE N/A GO:0003849 ... B6XIT1 39566672
    998996 9j7s:B (2.5) BS01 PHE N/A GO:0003849 ... B6XIT1 39566672
    998997 9j7s:C (2.5) BS01 PHE N/A GO:0003849 ... B6XIT1 39566672
    998998 9j7s:D (2.5) BS01 PHE N/A GO:0003849 ... B6XIT1 39566672
    998999 9j7u:A (3.14) BS01 BG6 N/A GO:0004346 ... P35575 39847333
    999000 9j7w:A (2.69) BS01 RET N/A GO:0016020 ... A0A1Y1HT90 40533461

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).