SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    999001 9j7w:C (2.69) BS01 RET N/A GO:0016020 ... A0A1Y1HT90 40533461
    999002 9j82:A (3.95) BS01 ZN N/A GO:0004175 ... O67776 40009668
    999003 9j83:A (3.61) BS01 peptide N/A GO:0004175 ... O67776 40009668
    999004 9j83:A (3.61) BS02 ZN N/A GO:0004175 ... O67776 40009668
    999005 9j84:A (4.21) BS01 A1EA5 N/A N/A Q9HCF6 N/A
    999006 9j84:B (4.21) BS01 A1EA5 N/A N/A Q9HCF6 N/A
    999007 9j84:C (4.21) BS01 A1EA5 N/A N/A Q9HCF6 N/A
    999008 9j84:D (4.21) BS01 A1EA5 N/A N/A Q9HCF6 N/A
    999009 9j85:A (2.15) BS01 CO N/A N/A N/A 41702921
    999010 9j85:A (2.15) BS02 AKG N/A N/A N/A 41702921
    999011 9j85:B (2.15) BS01 CO N/A N/A N/A 41702921
    999012 9j85:B (2.15) BS02 AKG N/A N/A N/A 41702921
    999013 9j85:C (2.15) BS01 CO N/A N/A N/A 41702921
    999014 9j85:C (2.15) BS02 AKG N/A N/A N/A 41702921
    999015 9j85:D (2.15) BS01 CO N/A N/A N/A 41702921
    999016 9j85:D (2.15) BS02 AKG N/A N/A N/A 41702921
    999017 9j87:A (2.84) BS01 F5U N/A N/A P28223 N/A
    999018 9j87:A (2.84) BS02 CLR N/A N/A P28223 N/A
    999019 9j87:A (2.84) BS03 CLR N/A N/A P28223 N/A
    999020 9j89:A (1.58) BS01 rna N/A GO:0003677 ... Q9H171 40267921
    999021 9j89:D (1.58) BS01 dna N/A GO:0003677 ... Q9H171 40267921
    999022 9j89:F (1.58) BS01 rna N/A GO:0003677 ... Q9H171 40267921
    999023 9j89:H (1.58) BS01 dna N/A GO:0003677 ... Q9H171 40267921
    999024 9j8a:H (1.75) BS01 peptide N/A N/A N/A 39798874
    999025 9j8a:L (1.75) BS01 peptide N/A N/A N/A 39798874
    999026 9j8c:A (2.9) BS01 SAR N/A GO:0001504 ... P48067 40069141
    999027 9j8c:A (2.9) BS02 CLR N/A GO:0001504 ... P48067 40069141
    999028 9j8c:A (2.9) BS03 CLR N/A GO:0001504 ... P48067 40069141
    999029 9j8d:A (3.0) BS01 A1EBX N/A GO:0001504 ... P48067 40069141
    999030 9j8d:A (3.0) BS02 CLR N/A GO:0001504 ... P48067 40069141
    999031 9j8d:A (3.0) BS03 CLR N/A GO:0001504 ... P48067 40069141
    999032 9j8e:A (2.65) BS01 BT5 N/A GO:0003677 ... P46363 39213703
    999033 9j8e:B (2.65) BS01 BT5 N/A GO:0003677 ... P46363 39213703
    999034 9j8g:A (1.8) BS01 dna N/A GO:0003677 ... Q9QY24 40267921
    999035 9j8g:A (1.8) BS02 rna N/A GO:0003677 ... Q9QY24 40267921
    999036 9j8k:A (1.82) BS01 A1L33 N/A GO:0015276 ... P19491 40479050
    999037 9j8m:A (3.82) BS01 dna N/A GO:0000786 ... P68431 39929866
    999038 9j8m:A (3.82) BS02 dna N/A GO:0000786 ... P68431 39929866
    999039 9j8m:B (3.82) BS01 dna N/A GO:0000781 ... P62805 39929866
    999040 9j8m:B (3.82) BS02 dna N/A GO:0000781 ... P62805 39929866
    999041 9j8m:C (3.82) BS01 dna N/A GO:0000786 ... P04908 39929866
    999042 9j8m:C (3.82) BS02 dna N/A GO:0000786 ... P04908 39929866
    999043 9j8m:D (3.82) BS01 dna N/A GO:0000786 ... P06899 39929866
    999044 9j8m:D (3.82) BS02 dna N/A GO:0000786 ... P06899 39929866
    999045 9j8m:E (3.82) BS01 dna N/A GO:0000786 ... P68431 39929866
    999046 9j8m:E (3.82) BS02 dna N/A GO:0000786 ... P68431 39929866
    999047 9j8m:F (3.82) BS01 dna N/A GO:0000781 ... P62805 39929866
    999048 9j8m:F (3.82) BS02 dna N/A GO:0000781 ... P62805 39929866
    999049 9j8m:G (3.82) BS01 dna N/A GO:0000786 ... P04908 39929866
    999050 9j8m:G (3.82) BS02 dna N/A GO:0000786 ... P04908 39929866
    999051 9j8m:H (3.82) BS01 dna N/A GO:0000786 ... P06899 39929866
    999052 9j8m:H (3.82) BS02 dna N/A GO:0000786 ... P06899 39929866
    999053 9j8m:K (3.82) BS01 dna N/A GO:0000785 ... O75531 39929866
    999054 9j8m:K (3.82) BS02 dna N/A GO:0000785 ... O75531 39929866
    999055 9j8m:L (3.82) BS01 dna N/A GO:0000785 ... O75531 39929866
    999056 9j8m:L (3.82) BS02 dna N/A GO:0000785 ... O75531 39929866
    999057 9j8m:M (3.82) BS01 dna N/A N/A P02545 39929866
    999058 9j8n:A (7.14) BS01 dna N/A GO:0000786 ... P68431 39929866
    999059 9j8n:A (7.14) BS02 dna N/A GO:0000786 ... P68431 39929866
    999060 9j8n:B (7.14) BS01 dna N/A GO:0000781 ... P62805 39929866
    999061 9j8n:B (7.14) BS02 dna N/A GO:0000781 ... P62805 39929866
    999062 9j8n:C (7.14) BS01 dna N/A GO:0000786 ... P04908 39929866
    999063 9j8n:C (7.14) BS02 dna N/A GO:0000786 ... P04908 39929866
    999064 9j8n:D (7.14) BS01 dna N/A GO:0000786 ... P06899 39929866
    999065 9j8n:D (7.14) BS02 dna N/A GO:0000786 ... P06899 39929866
    999066 9j8n:E (7.14) BS01 dna N/A GO:0000786 ... P68431 39929866
    999067 9j8n:E (7.14) BS02 dna N/A GO:0000786 ... P68431 39929866
    999068 9j8n:F (7.14) BS01 dna N/A GO:0000781 ... P62805 39929866
    999069 9j8n:F (7.14) BS02 dna N/A GO:0000781 ... P62805 39929866
    999070 9j8n:G (7.14) BS01 dna N/A GO:0000786 ... P04908 39929866
    999071 9j8n:G (7.14) BS02 dna N/A GO:0000786 ... P04908 39929866
    999072 9j8n:H (7.14) BS01 dna N/A GO:0000786 ... P06899 39929866
    999073 9j8n:K (7.14) BS01 dna N/A GO:0000785 ... O75531 39929866
    999074 9j8n:K (7.14) BS02 dna N/A GO:0000785 ... O75531 39929866
    999075 9j8n:L (7.14) BS01 dna N/A GO:0000785 ... O75531 39929866
    999076 9j8n:M (7.14) BS01 dna N/A N/A P02545 39929866
    999077 9j8n:N (7.14) BS01 dna N/A GO:0000785 ... O75531 39929866
    999078 9j8n:N (7.14) BS02 dna N/A GO:0000785 ... O75531 39929866
    999079 9j8n:O (7.14) BS01 dna N/A GO:0000785 ... O75531 39929866
    999080 9j8n:O (7.14) BS02 dna N/A GO:0000785 ... O75531 39929866
    999081 9j8n:a (7.14) BS01 dna N/A GO:0000786 ... P68431 39929866
    999082 9j8n:a (7.14) BS02 dna N/A GO:0000786 ... P68431 39929866
    999083 9j8n:b (7.14) BS01 dna N/A GO:0000781 ... P62805 39929866
    999084 9j8n:b (7.14) BS02 dna N/A GO:0000781 ... P62805 39929866
    999085 9j8n:c (7.14) BS01 dna N/A GO:0000786 ... P04908 39929866
    999086 9j8n:c (7.14) BS02 dna N/A GO:0000786 ... P04908 39929866
    999087 9j8n:d (7.14) BS01 dna N/A GO:0000786 ... P06899 39929866
    999088 9j8n:d (7.14) BS02 dna N/A GO:0000786 ... P06899 39929866
    999089 9j8n:e (7.14) BS01 dna N/A GO:0000786 ... P68431 39929866
    999090 9j8n:e (7.14) BS02 dna N/A GO:0000786 ... P68431 39929866
    999091 9j8n:f (7.14) BS01 dna N/A GO:0000781 ... P62805 39929866
    999092 9j8n:f (7.14) BS02 dna N/A GO:0000781 ... P62805 39929866
    999093 9j8n:g (7.14) BS01 dna N/A GO:0000786 ... P04908 39929866
    999094 9j8n:g (7.14) BS02 dna N/A GO:0000786 ... P04908 39929866
    999095 9j8n:h (7.14) BS01 dna N/A GO:0000786 ... P06899 39929866
    999096 9j8n:h (7.14) BS02 dna N/A GO:0000786 ... P06899 39929866
    999097 9j8n:k (7.14) BS01 dna N/A GO:0000785 ... O75531 39929866
    999098 9j8n:k (7.14) BS02 dna N/A GO:0000785 ... O75531 39929866
    999099 9j8n:m (7.14) BS01 dna N/A N/A P02545 39929866
    999100 9j8n:n (7.14) BS01 dna N/A GO:0000785 ... O75531 39929866
    999101 9j8n:n (7.14) BS02 dna N/A GO:0000785 ... O75531 39929866
    999102 9j8n:o (7.14) BS01 dna N/A GO:0000785 ... O75531 39929866
    999103 9j8n:o (7.14) BS02 dna N/A GO:0000785 ... O75531 39929866
    999104 9j8o:A (4.05) BS01 dna N/A GO:0000786 ... P68431 39929866
    999105 9j8o:A (4.05) BS02 dna N/A GO:0000786 ... P68431 39929866
    999106 9j8o:B (4.05) BS01 dna N/A GO:0000781 ... P62805 39929866
    999107 9j8o:B (4.05) BS02 dna N/A GO:0000781 ... P62805 39929866
    999108 9j8o:C (4.05) BS01 dna N/A GO:0000786 ... P04908 39929866
    999109 9j8o:C (4.05) BS02 dna N/A GO:0000786 ... P04908 39929866
    999110 9j8o:D (4.05) BS01 dna N/A GO:0000786 ... P06899 39929866
    999111 9j8o:D (4.05) BS02 dna N/A GO:0000786 ... P06899 39929866
    999112 9j8o:E (4.05) BS01 dna N/A GO:0000786 ... P68431 39929866
    999113 9j8o:E (4.05) BS02 dna N/A GO:0000786 ... P68431 39929866
    999114 9j8o:F (4.05) BS01 dna N/A GO:0000781 ... P62805 39929866
    999115 9j8o:F (4.05) BS02 dna N/A GO:0000781 ... P62805 39929866
    999116 9j8o:G (4.05) BS01 dna N/A GO:0000786 ... P04908 39929866
    999117 9j8o:H (4.05) BS01 dna N/A GO:0000786 ... P06899 39929866
    999118 9j8o:H (4.05) BS02 dna N/A GO:0000786 ... P06899 39929866
    999119 9j8o:K (4.05) BS01 dna N/A GO:0000785 ... O75531 39929866
    999120 9j8o:K (4.05) BS02 dna N/A GO:0000785 ... O75531 39929866
    999121 9j8o:L (4.05) BS01 dna N/A GO:0000785 ... O75531 39929866
    999122 9j8o:N (4.05) BS01 dna N/A GO:0000785 ... Q02539 39929866
    999123 9j8o:N (4.05) BS02 dna N/A GO:0000785 ... Q02539 39929866
    999124 9j8o:a (4.05) BS01 dna N/A GO:0000786 ... P68431 39929866
    999125 9j8o:a (4.05) BS02 dna N/A GO:0000786 ... P68431 39929866
    999126 9j8o:b (4.05) BS01 dna N/A GO:0000781 ... P62805 39929866
    999127 9j8o:b (4.05) BS02 dna N/A GO:0000781 ... P62805 39929866
    999128 9j8o:c (4.05) BS01 dna N/A GO:0000786 ... P04908 39929866
    999129 9j8o:c (4.05) BS02 dna N/A GO:0000786 ... P04908 39929866
    999130 9j8o:d (4.05) BS01 dna N/A GO:0000786 ... P06899 39929866
    999131 9j8o:d (4.05) BS02 dna N/A GO:0000786 ... P06899 39929866
    999132 9j8o:e (4.05) BS01 dna N/A GO:0000786 ... P68431 39929866
    999133 9j8o:e (4.05) BS02 dna N/A GO:0000786 ... P68431 39929866
    999134 9j8o:f (4.05) BS01 dna N/A GO:0000781 ... P62805 39929866
    999135 9j8o:f (4.05) BS02 dna N/A GO:0000781 ... P62805 39929866
    999136 9j8o:g (4.05) BS01 dna N/A GO:0000786 ... P04908 39929866
    999137 9j8o:g (4.05) BS02 dna N/A GO:0000786 ... P04908 39929866
    999138 9j8o:h (4.05) BS01 dna N/A GO:0000786 ... P06899 39929866
    999139 9j8o:h (4.05) BS02 dna N/A GO:0000786 ... P06899 39929866
    999140 9j8o:k (4.05) BS01 dna N/A GO:0000785 ... O75531 39929866
    999141 9j8o:k (4.05) BS02 dna N/A GO:0000785 ... O75531 39929866
    999142 9j8o:l (4.05) BS01 dna N/A GO:0000785 ... O75531 39929866
    999143 9j8o:n (4.05) BS01 dna N/A GO:0000785 ... Q02539 39929866
    999144 9j8o:n (4.05) BS02 dna N/A GO:0000785 ... Q02539 39929866
    999145 9j8p:A (3.21) BS01 rna N/A GO:0003676 ... Q9H6E5 39831302
    999146 9j8p:A (3.21) BS02 ZN N/A GO:0003676 ... Q9H6E5 39831302
    999147 9j8q:A (3.3) BS01 J4U N/A GO:0005886 ... Q9I537 N/A
    999148 9j8q:A (3.3) BS02 J4U N/A GO:0005886 ... Q9I537 N/A
    999149 9j8q:B (3.3) BS01 J4U N/A GO:0005886 ... Q9I537 N/A
    999150 9j8q:B (3.3) BS02 J4U N/A GO:0005886 ... Q9I537 N/A
    999151 9j8r:A (3.4) BS01 J4U N/A GO:0005886 ... Q9I537 N/A
    999152 9j8r:A (3.4) BS02 J4U N/A GO:0005886 ... Q9I537 N/A
    999153 9j8r:B (3.4) BS01 J4U N/A GO:0005886 ... Q9I537 N/A
    999154 9j8r:B (3.4) BS02 J4U N/A GO:0005886 ... Q9I537 N/A
    999155 9j8t:A (2.39) BS01 peptide N/A GO:0008233 ... P0DTC1 N/A
    999156 9j8u:A (2.71) BS01 peptide N/A GO:0008233 ... P0DTC1 N/A
    999157 9j8v:A (3.1) BS01 RTP N/A GO:0003968 ... A0A7G8JUR3 40044941
    999158 9j8v:A (3.1) BS02 RTP N/A GO:0003968 ... A0A7G8JUR3 40044941
    999159 9j8w:A (3.38) BS01 dna N/A GO:0000786 ... P68431 41219227
    999160 9j8w:A (3.38) BS02 dna N/A GO:0000786 ... P68431 41219227
    999161 9j8w:B (3.38) BS01 dna N/A GO:0000781 ... P62805 41219227
    999162 9j8w:B (3.38) BS02 dna N/A GO:0000781 ... P62805 41219227
    999163 9j8w:C (3.38) BS01 dna N/A GO:0000786 ... P04908 41219227
    999164 9j8w:C (3.38) BS02 dna N/A GO:0000786 ... P04908 41219227
    999165 9j8w:D (3.38) BS01 dna N/A GO:0000786 ... P06899 41219227
    999166 9j8w:D (3.38) BS02 dna N/A GO:0000786 ... P06899 41219227
    999167 9j8w:E (3.38) BS01 dna N/A GO:0000786 ... P68431 41219227
    999168 9j8w:E (3.38) BS02 dna N/A GO:0000786 ... P68431 41219227
    999169 9j8w:F (3.38) BS01 dna N/A GO:0000781 ... P62805 41219227
    999170 9j8w:F (3.38) BS02 dna N/A GO:0000781 ... P62805 41219227
    999171 9j8w:G (3.38) BS01 dna N/A GO:0000786 ... P04908 41219227
    999172 9j8w:G (3.38) BS02 dna N/A GO:0000786 ... P04908 41219227
    999173 9j8w:H (3.38) BS01 dna N/A GO:0000786 ... P06899 41219227
    999174 9j8w:H (3.38) BS02 dna N/A GO:0000786 ... P06899 41219227
    999175 9j8w:L (3.38) BS01 dna N/A GO:0000209 ... Q92466 41219227
    999176 9j8w:L (3.38) BS02 dna N/A GO:0000209 ... Q92466 41219227
    999177 9j90:A (2.8) BS01 GDE N/A GO:0005737 ... Q9HXI4 N/A
    999178 9j90:B (2.8) BS01 GDE N/A GO:0005737 ... Q9HXI4 N/A
    999179 9j92:A (4.6) BS01 DQC N/A N/A N/A N/A
    999180 9j92:B (4.6) BS01 DQC N/A N/A N/A N/A
    999181 9j92:C (4.6) BS01 DQC N/A N/A N/A N/A
    999182 9j92:D (4.6) BS01 DQC N/A N/A N/A N/A
    999183 9j94:A (3.65) BS01 GGL N/A N/A N/A N/A
    999184 9j94:A (3.65) BS02 A1EA4 N/A N/A N/A N/A
    999185 9j94:B (3.65) BS01 GGL N/A N/A N/A N/A
    999186 9j94:B (3.65) BS02 A1EA4 N/A N/A N/A N/A
    999187 9j94:B (3.65) BS03 A1EA4 N/A N/A N/A N/A
    999188 9j94:C (3.65) BS01 GGL N/A N/A N/A N/A
    999189 9j94:C (3.65) BS02 A1EA4 N/A N/A N/A N/A
    999190 9j94:D (3.65) BS01 A1EA4 N/A N/A N/A N/A
    999191 9j94:D (3.65) BS02 GGL N/A N/A N/A N/A
    999192 9j97:A (3.3) BS01 CLR N/A GO:0000822 ... Q9UBH6 40016597
    999193 9j97:A (3.3) BS02 PO4 N/A GO:0000822 ... Q9UBH6 40016597
    999194 9j97:B (3.3) BS01 CLR N/A GO:0000822 ... Q9UBH6 40016597
    999195 9j97:B (3.3) BS02 PO4 N/A GO:0000822 ... Q9UBH6 40016597
    999196 9j9a:A (1.75) BS01 BGC N/A GO:0004252 ... Q8GAX8 39276694
    999197 9j9a:A (1.75) BS02 BGC N/A GO:0004252 ... Q8GAX8 39276694
    999198 9j9b:A (3.83) BS01 peptide N/A GO:0005515 ... P39515 40877479
    999199 9j9b:D (3.83) BS01 peptide N/A GO:0003674 ... Q02889 40877479
    999200 9j9c:A () BS01 U2F N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).